Wall clock time and date at job start Fri Apr 10 2020 17:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86792 * 120.00081 * 2 1 4 4 H 1.48500 * 109.47432 * 240.00187 * 3 2 1 5 5 H 1.48498 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47033 * 120.00417 * 3 2 1 7 7 C 1.38638 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99427 * 179.97438 * 7 2 1 9 9 O 1.34799 * 120.00342 * 359.97438 * 7 2 1 10 10 C 1.35780 * 117.00316 * 174.98360 * 9 7 2 11 11 C 1.38737 * 120.08381 * 5.16195 * 10 9 7 12 12 C 1.38343 * 119.97441 * 179.97438 * 11 10 9 13 13 F 1.35105 * 119.91899 * 180.02562 * 12 11 10 14 14 C 1.38543 * 120.15433 * 0.02562 * 12 11 10 15 15 C 1.38187 * 120.17910 * 359.68314 * 14 12 11 16 16 C 1.38711 * 120.01866 * 0.59382 * 15 14 12 17 17 N 1.40084 * 120.07968 * 179.70164 * 16 15 14 18 18 C 1.34779 * 119.99780 * 335.19218 * 17 16 15 19 19 O 1.21299 * 120.00155 * 354.44457 * 18 17 16 20 20 C 1.50695 * 119.99817 * 174.43988 * 18 17 16 21 21 N 1.46511 * 109.47230 * 180.02562 * 20 18 17 22 22 C 1.34430 * 126.82188 * 124.99845 * 21 20 18 23 23 N 1.30828 * 108.07332 * 179.97438 * 22 21 20 24 24 C 1.33238 * 109.83569 * 359.97438 * 23 22 21 25 25 N 1.30720 * 108.94088 * 359.75688 * 24 23 22 26 26 H 0.97001 * 119.99834 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.01511 * 359.95875 * 11 10 9 28 28 H 1.08001 * 119.91179 * 179.97438 * 14 12 11 29 29 H 1.07997 * 119.99520 * 180.31311 * 15 14 12 30 30 H 0.96996 * 120.00239 * 155.19916 * 17 16 15 31 31 H 1.08999 * 109.47609 * 60.00684 * 20 18 17 32 32 H 1.09000 * 109.47466 * 300.00055 * 20 18 17 33 33 H 1.07997 * 125.96058 * 0.02562 * 22 21 20 34 34 H 1.07994 * 125.53515 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6962 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0702 -3.5045 -0.1069 11 6 3.4560 -3.4392 -0.1014 12 6 4.2030 -4.5986 -0.2094 13 9 5.5525 -4.5337 -0.2034 14 6 3.5706 -5.8259 -0.3235 15 6 2.1906 -5.8989 -0.3235 16 6 1.4344 -4.7406 -0.2215 17 7 0.0354 -4.8126 -0.2277 18 6 -0.5829 -5.8583 -0.8114 19 8 0.0653 -6.6847 -1.4182 20 6 -2.0797 -6.0010 -0.7098 21 7 -2.5044 -7.2096 -1.4208 22 6 -3.2300 -8.2251 -0.9214 23 7 -3.3973 -9.1097 -1.8706 24 6 -2.7963 -8.6958 -2.9854 25 7 -2.2400 -7.5343 -2.7614 26 1 -0.4850 0.8401 0.0004 27 1 3.9515 -2.4835 -0.0132 28 1 4.1576 -6.7285 -0.4079 29 1 1.7007 -6.8577 -0.4076 30 1 -0.4883 -4.1098 0.1879 31 1 -2.5589 -5.1296 -1.1559 32 1 -2.3672 -6.0769 0.3388 33 1 -3.6093 -8.2976 0.0872 34 1 -2.7753 -9.2312 -3.9231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760785613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:13 Heat of formation + Delta-G solvation = 6.074786 kcal Electronic energy + Delta-G solvation = -23963.701637 eV Core-core repulsion = 20007.011826 eV Total energy + Delta-G solvation = -3956.689811 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.091 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.86412 -42.99362 -41.67904 -40.24265 -38.06056 -35.69410 -35.00524 -34.32062 -32.14279 -31.23697 -30.56704 -28.56994 -27.38705 -24.42810 -23.65334 -22.90237 -22.81362 -21.47667 -20.18797 -19.64841 -18.63802 -18.49666 -17.76893 -17.25095 -16.99130 -16.63226 -16.39539 -16.13554 -15.97956 -15.88999 -15.46964 -15.30896 -15.12804 -14.97873 -14.57918 -14.05769 -13.92281 -13.70138 -13.45949 -13.10348 -12.78191 -12.60319 -12.39019 -12.17114 -11.69913 -11.42517 -11.15129 -10.98832 -10.83290 -10.75113 -10.51344 -9.60341 -8.77239 -8.52570 -6.17769 0.11555 0.41227 0.71047 1.27224 1.37912 1.43561 1.45820 1.50780 2.01035 2.09669 2.14300 2.64247 2.99862 3.15829 3.40541 3.42342 3.56379 3.69356 3.90872 4.07857 4.12731 4.14776 4.31566 4.42620 4.56997 4.87655 4.97288 5.18740 5.24880 5.26318 5.31496 5.45092 5.51332 5.88504 5.91318 5.98951 6.38899 6.92456 7.00101 7.15370 7.58135 8.67439 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.003990 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.120602 B = 7016.151201 C = 8726.245035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.004 4.004 3 Si 1.008 2.992 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.418 4.418 8 H 0.098 0.902 9 O -0.199 6.199 10 C 0.132 3.868 11 C -0.264 4.264 12 C 0.121 3.879 13 F -0.145 7.145 14 C -0.206 4.206 15 C -0.061 4.061 16 C 0.067 3.933 17 N -0.643 5.643 18 C 0.495 3.505 19 O -0.544 6.544 20 C 0.118 3.882 21 N -0.377 5.377 22 C 0.267 3.733 23 N -0.575 5.575 24 C 0.186 3.814 25 N -0.341 5.341 26 H 0.276 0.724 27 H 0.137 0.863 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.424 0.576 31 H 0.138 0.862 32 H 0.191 0.809 33 H 0.270 0.730 34 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 -10.027 2.791 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.205 4.205 3 Si 0.828 3.172 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.115 0.885 9 O -0.104 6.104 10 C 0.078 3.922 11 C -0.285 4.285 12 C 0.101 3.899 13 F -0.124 7.124 14 C -0.225 4.225 15 C -0.082 4.082 16 C -0.028 4.028 17 N -0.289 5.289 18 C 0.282 3.718 19 O -0.420 6.420 20 C -0.007 4.007 21 N -0.168 5.168 22 C -0.028 4.028 23 N -0.302 5.302 24 C -0.116 4.116 25 N -0.168 5.168 26 H 0.085 0.915 27 H 0.155 0.845 28 H 0.171 0.829 29 H 0.171 0.829 30 H 0.262 0.738 31 H 0.155 0.845 32 H 0.208 0.792 33 H 0.286 0.714 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.217 -10.251 1.919 11.661 hybrid contribution 0.702 1.427 0.160 1.598 sum -4.515 -8.824 2.080 10.128 Atomic orbital electron populations 1.70079 1.07360 1.29111 1.47175 1.26295 0.96831 1.01884 0.95440 0.84784 0.77638 0.75101 0.79682 1.18966 1.19390 1.18362 1.21666 0.92496 0.81080 1.54084 0.88492 1.83854 1.34563 1.11696 1.80301 1.19029 0.90069 0.87116 0.95960 1.20949 0.93515 0.99009 1.14980 1.17471 0.76251 0.94289 1.01910 1.91430 1.29561 1.97353 1.94060 1.20871 0.94720 0.96476 1.10473 1.20911 0.92556 0.97251 0.97441 1.17084 0.83710 0.90810 1.11207 1.43139 1.04367 1.25187 1.56159 1.21271 0.91498 0.81067 0.77931 1.90714 1.67254 1.43054 1.41024 1.21855 0.89842 0.87149 1.01843 1.50082 1.40448 1.18172 1.08076 1.27077 0.91450 0.82528 1.01762 1.70539 1.27980 1.30868 1.00856 1.26491 0.93941 0.91637 0.99559 1.78167 1.24484 1.18935 0.95229 0.91517 0.84542 0.82876 0.82850 0.73800 0.84451 0.79213 0.71448 0.74878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.35 13.67 21.61 0.30 -48.05 16 2 C 0.00 -0.21 5.49 84.83 0.47 0.26 16 3 Si 1.01 39.38 29.55 68.60 2.03 41.40 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 7 C -0.42 -21.83 9.49 67.92 0.64 -21.19 16 8 H 0.10 4.79 5.20 -2.91 -0.02 4.78 16 9 O -0.20 -10.18 9.17 -22.75 -0.21 -10.39 16 10 C 0.13 5.90 6.66 22.69 0.15 6.05 16 11 C -0.26 -11.26 9.14 22.41 0.20 -11.06 16 12 C 0.12 4.60 7.29 22.37 0.16 4.76 16 13 F -0.15 -5.27 17.26 44.97 0.78 -4.49 16 14 C -0.21 -7.08 10.02 22.33 0.22 -6.86 16 15 C -0.06 -2.20 8.72 22.37 0.19 -2.00 16 16 C 0.07 2.60 6.45 38.23 0.25 2.85 16 17 N -0.64 -20.45 5.29 -303.04 -1.60 -22.06 16 18 C 0.49 14.15 7.67 87.66 0.67 14.83 16 19 O -0.54 -19.88 12.92 -3.09 -0.04 -19.92 16 20 C 0.12 2.03 7.03 85.63 0.60 2.63 16 21 N -0.38 -8.33 3.40 -355.79 -1.21 -9.54 16 22 C 0.27 4.60 12.63 180.36 2.28 6.88 16 23 N -0.57 -13.39 11.19 -204.01 -2.28 -15.67 16 24 C 0.19 4.64 13.03 180.76 2.36 6.99 16 25 N -0.34 -10.06 11.84 -61.25 -0.72 -10.78 16 26 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 27 H 0.14 5.92 5.63 -2.91 -0.02 5.90 16 28 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.15 5.33 5.79 -2.91 -0.02 5.32 16 30 H 0.42 12.50 8.34 -92.71 -0.77 11.72 16 31 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.19 1.06 8.09 -2.39 -0.02 1.04 16 33 H 0.27 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.24 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -75.19 312.92 5.65 -69.54 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.42 Total: 25.81 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 8.20 Total: 4.15 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -5.52 Total: -106.10 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.25 Total: -30.30 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.78 Total: -4.49 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.40 kcal Total: -75.19 5.65 -69.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760785613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.612 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds