Wall clock time and date at job start Fri Apr 10 2020 17:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 120.00156 * 2 1 4 4 C 1.38501 * 119.99694 * 180.02562 * 2 1 3 5 5 C 1.39604 * 120.04920 * 4.99823 * 4 2 1 6 6 C 1.38286 * 118.02918 * 179.97438 * 5 4 2 7 7 C 1.40069 * 117.99521 * 0.02562 * 6 5 4 8 8 C 1.47854 * 120.09812 * 179.97438 * 7 6 5 9 9 O 1.21554 * 120.00043 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99760 * 180.02562 * 8 7 6 11 11 C 1.47419 * 125.65139 * 0.02562 * 10 8 7 12 12 C 1.54905 * 104.92834 * 155.80015 * 11 10 8 13 13 C 1.55448 * 101.45165 * 37.00468 * 12 11 10 14 14 H 1.08997 * 110.70436 * 82.89324 * 13 12 11 15 15 N 1.46505 * 110.70786 * 206.14333 * 13 12 11 16 16 C 1.36933 * 119.99837 * 200.00230 * 15 13 12 17 17 H 1.08001 * 120.00555 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99928 * 180.02562 * 16 15 13 19 19 N 1.31624 * 120.00025 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00154 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46744 * 59.99891 * 20 18 16 22 22 H 1.48502 * 109.47173 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47304 * 300.00283 * 20 18 16 24 24 C 1.47026 * 125.64285 * 180.02562 * 10 8 7 25 25 N 1.32768 * 119.80602 * 0.24710 * 7 6 5 26 26 N 1.28360 * 122.10126 * 359.47127 * 25 7 6 27 27 H 1.09000 * 109.46924 * 269.99951 * 1 2 3 28 28 H 1.09000 * 109.46778 * 29.99587 * 1 2 3 29 29 H 1.08994 * 109.47547 * 149.99498 * 1 2 3 30 30 H 1.09001 * 109.47317 * 270.00028 * 3 2 1 31 31 H 1.09001 * 109.46956 * 29.99983 * 3 2 1 32 32 H 1.09000 * 109.46875 * 150.00114 * 3 2 1 33 33 H 1.07997 * 120.98372 * 0.02562 * 5 4 2 34 34 H 1.08001 * 121.00398 * 179.97438 * 6 5 4 35 35 H 1.09002 * 110.36926 * 274.69484 * 11 10 8 36 36 H 1.08995 * 110.36556 * 36.90768 * 11 10 8 37 37 H 1.09002 * 111.00852 * 155.13877 * 12 11 10 38 38 H 1.09004 * 111.00578 * 278.99532 * 12 11 10 39 39 H 0.96997 * 119.99915 * 20.00426 * 15 13 12 40 40 H 0.97006 * 119.99771 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.88266 * 300.48971 * 24 10 8 42 42 H 1.08997 * 109.88244 * 61.50329 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1575 -1.1995 -0.0005 5 6 1.4644 -2.4067 -0.1064 6 6 2.1975 -3.5793 -0.1032 7 6 3.5906 -3.4835 0.0066 8 6 4.4196 -4.7077 0.0153 9 8 3.8923 -5.7994 -0.0724 10 7 5.7598 -4.6132 0.1216 11 6 6.5264 -3.3592 0.2362 12 6 7.8489 -3.7624 0.9347 13 6 8.1178 -5.1578 0.3046 14 1 8.6058 -5.0553 -0.6647 15 7 8.9216 -5.9871 1.2060 16 6 9.6112 -7.0629 0.7140 17 1 9.5623 -7.3004 -0.3384 18 6 10.3724 -7.8490 1.5682 19 7 10.4308 -7.5605 2.8511 20 14 11.3126 -9.3171 0.8973 21 1 12.2838 -8.8565 -0.1274 22 1 12.0419 -9.9860 2.0045 23 1 10.3601 -10.2754 0.2811 24 6 6.6995 -5.7438 0.1423 25 7 4.1640 -2.2904 0.1083 26 7 3.4822 -1.2029 0.1000 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 2.3793 1.5834 -1.0277 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 0.3878 -2.4243 -0.1891 34 1 1.7105 -4.5400 -0.1821 35 1 6.7297 -2.9472 -0.7522 36 1 5.9819 -2.6360 0.8432 37 1 8.6480 -3.0617 0.6928 38 1 7.7131 -3.8404 2.0134 39 1 8.9652 -5.7740 2.1513 40 1 10.9631 -8.1096 3.4479 41 1 6.4714 -6.4001 0.9822 42 1 6.6304 -6.3005 -0.7922 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970502849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:05 Heat of formation + Delta-G solvation = 46.705140 kcal Electronic energy + Delta-G solvation = -24447.481298 eV Core-core repulsion = 20849.565413 eV Total energy + Delta-G solvation = -3597.915885 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.25096 -40.76975 -38.74509 -38.05238 -35.94798 -34.17982 -33.54276 -32.50272 -31.06425 -29.36781 -29.20117 -27.22029 -25.92907 -25.48145 -24.05130 -23.17270 -21.80177 -21.03219 -19.37975 -18.99208 -18.47101 -17.95167 -17.48185 -16.90920 -16.66907 -16.36320 -15.76508 -15.59309 -15.35921 -15.26967 -15.01046 -14.86660 -14.42767 -14.16636 -14.04266 -13.46175 -13.41502 -13.27000 -13.12599 -12.89474 -12.85449 -12.71532 -12.44635 -12.31389 -12.13804 -11.76817 -11.71029 -11.50113 -11.31501 -11.17976 -10.96586 -10.65778 -9.71067 -9.09230 -8.90458 -7.95372 -5.25875 -0.40486 -0.18023 1.48411 1.51619 1.57331 1.61661 1.68947 1.89490 2.56331 2.64135 2.94771 3.35526 3.43579 3.53349 3.66076 3.71170 3.87628 3.95249 4.03950 4.22082 4.36945 4.41019 4.42874 4.50558 4.56558 4.59147 4.72040 4.79767 4.80786 4.88577 4.95870 4.99793 5.04274 5.08095 5.18687 5.29545 5.39896 5.53039 5.93924 6.00617 6.25713 6.44212 6.92375 7.32620 7.61924 8.04152 8.28642 9.27438 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.036081 B = 0.002653 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.852462 B =10552.728121 C =11062.509083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.595 5.595 3 C 0.087 3.913 4 C 0.345 3.655 5 C -0.171 4.171 6 C -0.030 4.030 7 C -0.047 4.047 8 C 0.582 3.418 9 O -0.580 6.580 10 N -0.595 5.595 11 C 0.113 3.887 12 C -0.130 4.130 13 C 0.167 3.833 14 H 0.074 0.926 15 N -0.725 5.725 16 C -0.247 4.247 17 H 0.079 0.921 18 C -0.073 4.073 19 N -0.968 5.968 20 Si 0.974 3.026 21 H -0.274 1.274 22 H -0.296 1.296 23 H -0.281 1.281 24 C 0.094 3.906 25 N -0.171 5.171 26 N -0.328 5.328 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.194 0.806 34 H 0.168 0.832 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.376 0.624 40 H 0.252 0.748 41 H 0.041 0.959 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.551 21.271 -7.450 32.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.307 5.307 3 C -0.055 4.055 4 C 0.104 3.896 5 C -0.204 4.204 6 C -0.059 4.059 7 C -0.199 4.199 8 C 0.369 3.631 9 O -0.459 6.459 10 N -0.327 5.327 11 C -0.009 4.009 12 C -0.169 4.169 13 C 0.057 3.943 14 H 0.092 0.908 15 N -0.364 5.364 16 C -0.379 4.379 17 H 0.096 0.904 18 C -0.265 4.265 19 N -0.618 5.618 20 Si 0.802 3.198 21 H -0.200 1.200 22 H -0.222 1.222 23 H -0.207 1.207 24 C -0.032 4.032 25 N -0.018 5.018 26 N -0.183 5.183 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.211 0.789 34 H 0.185 0.815 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.209 0.791 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.566 21.653 -7.471 32.154 hybrid contribution -0.476 -2.020 0.189 2.084 sum -23.042 19.633 -7.282 31.136 Atomic orbital electron populations 1.22177 0.75459 1.05320 1.03389 1.46515 1.07009 1.02323 1.74811 1.21856 0.97717 0.83483 1.02465 1.20438 0.91036 0.88682 0.89466 1.22154 1.03714 0.89420 1.05093 1.22280 0.91714 1.01459 0.90412 1.22142 0.94306 0.93301 1.10119 1.17619 0.80934 0.87633 0.76878 1.90746 1.72677 1.28936 1.53591 1.48443 1.04757 1.10193 1.69260 1.22679 0.90834 0.85400 1.01967 1.23103 0.97475 0.96296 1.00031 1.21454 0.87871 0.90274 0.94741 0.90819 1.42516 1.54685 1.31720 1.07442 1.19618 1.20652 1.03791 0.93807 0.90358 1.25584 1.02472 1.02605 0.95849 1.69815 1.45947 1.42322 1.03681 0.85217 0.78426 0.79314 0.76827 1.19975 1.22184 1.20732 1.22894 0.91169 0.88997 1.00142 1.73122 1.30032 0.94539 1.04140 1.73089 1.05156 1.19255 1.20840 0.91213 0.88215 0.89538 0.92199 0.88495 0.91529 0.78924 0.81455 0.89801 0.87592 0.87662 0.91604 0.79121 0.93942 0.94068 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.23 10.29 127.77 1.31 1.54 16 2 N -0.60 -6.73 3.38 -753.59 -2.54 -9.28 16 3 C 0.09 0.81 10.50 127.77 1.34 2.15 16 4 C 0.35 6.30 7.44 133.21 0.99 7.29 16 5 C -0.17 -2.61 9.33 22.61 0.21 -2.40 16 6 C -0.03 -0.67 9.71 22.73 0.22 -0.45 16 7 C -0.05 -1.38 6.80 41.99 0.29 -1.10 16 8 C 0.58 21.21 7.83 86.79 0.68 21.89 16 9 O -0.58 -24.42 16.71 -3.89 -0.06 -24.49 16 10 N -0.60 -21.53 3.33 -815.20 -2.71 -24.24 16 11 C 0.11 3.39 5.95 86.85 0.52 3.91 16 12 C -0.13 -4.23 6.72 32.09 0.22 -4.01 16 13 C 0.17 6.75 3.59 46.28 0.17 6.91 16 14 H 0.07 2.88 8.12 -2.39 -0.02 2.86 16 15 N -0.72 -37.00 5.18 -316.85 -1.64 -38.64 16 16 C -0.25 -13.83 9.98 84.03 0.84 -12.99 16 17 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 18 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 19 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 20 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 24 C 0.09 3.88 6.62 86.73 0.57 4.45 16 25 N -0.17 -4.84 7.79 -48.50 -0.38 -5.22 16 26 N -0.33 -8.10 10.25 -55.17 -0.57 -8.67 16 27 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.10 -0.08 8.07 -2.39 -0.02 -0.10 16 29 H 0.09 0.06 6.01 -2.39 -0.01 0.05 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 0.37 8.07 -2.39 -0.02 0.35 16 32 H 0.07 0.91 7.31 -2.39 -0.02 0.90 16 33 H 0.19 1.19 6.11 -2.91 -0.02 1.17 16 34 H 0.17 3.30 7.71 -2.91 -0.02 3.28 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 36 H 0.11 3.09 5.88 -2.39 -0.01 3.07 16 37 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.07 2.27 8.01 -2.38 -0.02 2.25 16 39 H 0.38 20.59 7.72 -92.71 -0.72 19.87 16 40 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 41 H 0.04 1.96 8.03 -2.39 -0.02 1.94 16 42 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -76.15 348.72 2.56 -73.59 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.33 Total: 24.22 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 7.82 Total: 23.45 kcal Atomic # 7 Polarization: -138.03 SS G_CDS: -7.56 Total: -145.59 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.06 Total: -24.49 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -76.15 2.56 -73.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970502849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.294 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds