Wall clock time and date at job start Fri Apr 10 2020 17:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34582 * 125.75012 * 2 1 4 4 N 1.30873 * 107.62681 * 180.02562 * 3 2 1 5 5 C 1.34554 * 107.26785 * 359.97438 * 4 3 2 6 6 C 1.47871 * 126.04883 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99535 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99852 * 0.02902 * 6 5 4 9 9 C 1.47677 * 134.45047 * 179.97438 * 8 6 5 10 10 C 1.53444 * 85.96941 * 155.71345 * 9 8 6 11 11 C 1.47665 * 134.45637 * 0.02562 * 8 6 5 12 12 C 1.52628 * 113.71744 * 268.85066 * 10 9 8 13 13 C 1.53186 * 109.35647 * 171.27591 * 12 10 9 14 14 C 1.52669 * 109.42823 * 58.92861 * 13 12 10 15 15 N 1.46895 * 109.34484 * 303.77394 * 14 13 12 16 16 C 1.36941 * 120.68886 * 235.30832 * 15 14 13 17 17 H 1.07999 * 120.00331 * 151.85862 * 16 15 14 18 18 C 1.38812 * 120.00065 * 331.87001 * 16 15 14 19 19 N 1.31627 * 119.99737 * 335.04228 * 18 16 15 20 20 Si 1.86800 * 120.00421 * 155.04594 * 18 16 15 21 21 H 1.48499 * 109.46785 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47247 * 119.99720 * 20 18 16 23 23 H 1.48498 * 109.47104 * 239.99637 * 20 18 16 24 24 C 1.47110 * 118.62431 * 55.03629 * 15 14 13 25 25 N 1.28853 * 125.74584 * 180.30579 * 2 1 3 26 26 H 1.09007 * 109.47155 * 90.00326 * 1 2 3 27 27 H 1.08996 * 109.47479 * 210.00851 * 1 2 3 28 28 H 1.09006 * 109.46930 * 330.00471 * 1 2 3 29 29 H 1.07997 * 126.18673 * 359.96883 * 3 2 1 30 30 H 1.08997 * 113.79514 * 41.45269 * 9 8 6 31 31 H 1.08994 * 113.79584 * 269.97738 * 9 8 6 32 32 H 1.09002 * 113.79643 * 90.02067 * 11 8 6 33 33 H 1.09000 * 113.79467 * 318.54909 * 11 8 6 34 34 H 1.09002 * 109.49357 * 291.24383 * 12 10 9 35 35 H 1.09005 * 109.49027 * 51.31330 * 12 10 9 36 36 H 1.08998 * 109.49150 * 179.03004 * 13 12 10 37 37 H 1.09005 * 109.48818 * 299.09987 * 13 12 10 38 38 H 1.08998 * 109.43757 * 183.78551 * 14 13 12 39 39 H 1.09004 * 109.36592 * 63.70916 * 14 13 12 40 40 H 0.96996 * 119.99632 * 354.27097 * 19 18 16 41 41 H 1.09002 * 109.63459 * 68.57930 * 24 15 14 42 42 H 1.09000 * 109.64288 * 189.19161 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0922 0.0000 4 7 3.4951 0.6851 -0.0006 5 6 3.4750 -0.6603 -0.0003 6 6 4.6574 -1.5482 -0.0013 7 8 4.5112 -2.7549 -0.0015 8 7 5.8971 -1.0195 -0.0020 9 6 7.2619 -1.5835 -0.0025 10 6 7.6948 -0.2530 -0.6325 11 6 6.4349 0.3557 -0.0015 12 6 7.6744 -0.2610 -2.1586 13 6 7.9081 1.1615 -2.6769 14 6 9.2518 1.6743 -2.1647 15 7 9.2751 1.5967 -0.6980 16 6 9.5454 2.7071 0.0564 17 1 9.1404 2.7940 1.0538 18 6 10.3397 3.7212 -0.4609 19 7 11.2136 3.4542 -1.4083 20 14 10.1685 5.4647 0.1875 21 1 9.1235 5.5002 1.2420 22 1 11.4647 5.9096 0.7593 23 1 9.7808 6.3702 -0.9237 24 6 8.9963 0.3027 -0.0562 25 7 2.2177 -1.0458 -0.0056 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.9164 2.1190 -0.0005 30 1 7.3826 -2.4424 -0.6627 31 1 7.6690 -1.7509 0.9946 32 1 6.5962 0.7645 0.9960 33 1 5.8983 1.0380 -0.6608 34 1 8.4619 -0.9171 -2.5295 35 1 6.7065 -0.6207 -2.5076 36 1 7.9112 1.1555 -3.7669 37 1 7.1121 1.8144 -2.3187 38 1 9.3879 2.7096 -2.4773 39 1 10.0533 1.0600 -2.5750 40 1 11.3619 2.5370 -1.6868 41 1 9.8124 -0.3906 -0.2598 42 1 8.8903 0.4425 1.0196 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981751017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:29 Heat of formation + Delta-G solvation = 122.335507 kcal Electronic energy + Delta-G solvation = -25545.173315 eV Core-core repulsion = 21950.537009 eV Total energy + Delta-G solvation = -3594.636306 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.56044 -40.47031 -38.15808 -35.98033 -34.76912 -32.77060 -31.89481 -30.71891 -29.99091 -28.11237 -26.01885 -25.94739 -25.14613 -23.53669 -22.29668 -22.22663 -20.66965 -19.52508 -17.88121 -17.61691 -17.31264 -16.96222 -16.42992 -16.09147 -15.51855 -14.82977 -14.43542 -14.09295 -14.00823 -13.72820 -13.61051 -13.44602 -13.29266 -13.06835 -12.73998 -12.30771 -12.09798 -11.87546 -11.67786 -11.34801 -10.99846 -10.71169 -10.58747 -10.56902 -10.36570 -10.22551 -10.07813 -9.95537 -9.80042 -9.72426 -9.71235 -9.22389 -8.49045 -8.32470 -6.84504 -6.03836 -3.20513 1.28843 1.96612 2.01467 2.87783 3.42721 3.52858 3.55369 3.68770 3.94498 4.08457 4.43779 4.56703 4.58260 4.71147 4.80376 4.87778 5.13561 5.26105 5.34841 5.53080 5.60653 5.66309 5.73529 5.81544 5.84878 5.99226 6.06776 6.11356 6.17691 6.22121 6.35989 6.39051 6.48331 6.54825 6.64775 6.72325 6.79624 7.13376 7.25029 7.77310 7.82081 8.03289 8.26335 8.60638 9.13809 9.87080 10.32000 11.24598 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.003968 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.753507 B = 7054.381104 C = 8000.715478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.309 5.309 3 C 0.188 3.812 4 N -0.474 5.474 5 C 0.152 3.848 6 C 0.631 3.369 7 O -0.533 6.533 8 N -0.622 5.622 9 C 0.120 3.880 10 C -0.107 4.107 11 C 0.137 3.863 12 C -0.082 4.082 13 C -0.135 4.135 14 C 0.149 3.851 15 N -0.595 5.595 16 C -0.346 4.346 17 H 0.057 0.943 18 C -0.024 4.024 19 N -0.917 5.917 20 Si 1.067 2.933 21 H -0.292 1.292 22 H -0.295 1.295 23 H -0.291 1.291 24 C 0.165 3.835 25 N -0.259 5.259 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.226 0.774 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.015 0.985 40 H 0.270 0.730 41 H 0.023 0.977 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.227 -4.515 1.435 19.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.105 5.105 3 C -0.107 4.107 4 N -0.198 5.198 5 C -0.127 4.127 6 C 0.416 3.584 7 O -0.408 6.408 8 N -0.356 5.356 9 C -0.002 4.002 10 C -0.110 4.110 11 C 0.015 3.985 12 C -0.120 4.120 13 C -0.175 4.175 14 C 0.023 3.977 15 N -0.318 5.318 16 C -0.475 4.475 17 H 0.074 0.926 18 C -0.226 4.226 19 N -0.558 5.558 20 Si 0.897 3.103 21 H -0.218 1.218 22 H -0.222 1.222 23 H -0.218 1.218 24 C 0.038 3.962 25 N -0.098 5.098 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.243 0.757 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.033 0.967 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.870 -4.129 1.262 19.358 hybrid contribution -1.043 -1.242 0.294 1.648 sum -19.914 -5.371 1.556 20.684 Atomic orbital electron populations 1.22220 0.72401 1.05863 1.04907 1.47406 1.09235 1.03953 1.49869 1.26590 0.85926 0.95964 1.02262 1.71426 1.19980 1.09382 1.19053 1.23706 0.91851 0.89525 1.07662 1.15874 0.79973 0.85266 0.77267 1.90797 1.85129 1.13564 1.51337 1.49846 1.03403 1.11658 1.70741 1.23327 0.77763 0.98054 1.01083 1.22655 0.97621 0.93930 0.96760 1.23246 0.90480 0.83520 1.01216 1.21098 1.00458 0.98016 0.92400 1.21987 1.01197 0.95603 0.98682 1.20835 0.92040 1.00675 0.84121 1.44085 1.82155 1.04675 1.00930 1.19989 1.28926 0.97736 1.00844 0.92565 1.25791 0.92980 1.04303 0.99495 1.70715 1.29578 1.23075 1.32387 0.83505 0.75448 0.75877 0.75440 1.21807 1.22230 1.21760 1.20762 0.91201 0.88183 0.96030 1.74328 1.02901 1.13262 1.19300 0.89215 0.88306 0.87992 0.75736 0.90098 0.89390 0.89640 0.89076 0.92129 0.93170 0.93003 0.92210 0.90204 0.96671 0.91916 0.95968 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.34 11.38 59.84 0.68 1.02 16 2 N -0.31 -3.08 3.72 -69.39 -0.26 -3.34 16 3 C 0.19 1.86 12.62 -90.48 -1.14 0.72 16 4 N -0.47 -6.90 9.77 -12.36 -0.12 -7.03 16 5 C 0.15 2.52 7.91 -156.35 -1.24 1.28 16 6 C 0.63 11.54 8.06 -12.32 -0.10 11.44 16 7 O -0.53 -11.06 17.81 5.32 0.09 -10.97 16 8 N -0.62 -10.41 3.45 -181.57 -0.63 -11.04 16 9 C 0.12 1.82 7.97 -3.18 -0.03 1.79 16 10 C -0.11 -1.79 0.87 -154.42 -0.13 -1.92 16 11 C 0.14 2.29 6.86 -3.16 -0.02 2.27 16 12 C -0.08 -1.37 5.03 -26.83 -0.13 -1.51 16 13 C -0.14 -2.50 5.99 -26.80 -0.16 -2.66 16 14 C 0.15 3.36 4.62 -4.00 -0.02 3.34 16 15 N -0.60 -14.09 2.86 -172.75 -0.49 -14.59 16 16 C -0.35 -9.23 9.50 -15.06 -0.14 -9.37 16 17 H 0.06 1.51 7.94 -52.49 -0.42 1.09 16 18 C -0.02 -0.65 4.69 -17.43 -0.08 -0.73 16 19 N -0.92 -26.84 12.39 55.49 0.69 -26.15 16 20 Si 1.07 24.76 29.99 -169.99 -5.10 19.67 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.17 3.24 5.71 -3.81 -0.02 3.22 16 25 N -0.26 -3.85 12.08 32.08 0.39 -3.46 16 26 H 0.09 0.23 8.14 -51.92 -0.42 -0.19 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.23 1.05 8.06 -52.49 -0.42 0.62 16 30 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 31 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 32 H 0.09 1.45 7.97 -51.93 -0.41 1.04 16 33 H 0.09 1.61 6.72 -51.93 -0.35 1.26 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.82 8.02 -51.93 -0.42 0.41 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.15 7.37 -51.93 -0.38 0.76 16 38 H 0.08 2.04 6.23 -51.93 -0.32 1.72 16 39 H 0.02 0.35 7.94 -51.93 -0.41 -0.06 16 40 H 0.27 7.95 6.77 -40.82 -0.28 7.67 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.16 7.78 -51.93 -0.40 0.76 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -35.64 344.41 -8.77 -44.41 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.99 Total: -1.57 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -2.54 Total: 8.88 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -0.42 Total: -65.61 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.10 Total: 19.67 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.64 -8.77 -44.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981751017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.746 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds