Wall clock time and date at job start Fri Apr 10 2020 17:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34819 * 126.59431 * 2 1 4 4 C 1.36600 * 106.83719 * 180.02562 * 3 2 1 5 5 C 1.47522 * 125.76858 * 179.97438 * 4 3 2 6 6 O 1.21591 * 119.99871 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00106 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99809 * 180.02562 * 7 5 4 9 9 C 1.51229 * 111.47176 * 68.10149 * 8 7 5 10 10 C 1.55794 * 104.61902 * 84.06326 * 9 8 7 11 11 C 1.56289 * 105.88759 * 7.24345 * 10 9 8 12 12 C 1.50514 * 101.78910 * 24.26324 * 11 10 9 13 13 H 1.08996 * 108.13248 * 66.22272 * 12 11 10 14 14 N 1.42700 * 128.17158 * 198.64251 * 12 11 10 15 15 C 1.36932 * 127.10974 * 331.77334 * 14 12 11 16 16 H 1.08009 * 119.99585 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00537 * 180.02562 * 15 14 12 18 18 N 1.31622 * 119.99744 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00054 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47000 * 90.00277 * 19 17 15 21 21 H 1.48500 * 109.46931 * 209.99526 * 19 17 15 22 22 H 1.48492 * 109.47074 * 329.99866 * 19 17 15 23 23 C 1.49307 * 105.79174 * 151.74261 * 14 12 11 24 24 C 1.52135 * 111.09307 * 288.30455 * 8 7 5 25 25 N 1.34400 * 108.46036 * 0.25114 * 4 3 2 26 26 N 1.28765 * 109.52354 * 359.58352 * 25 4 3 27 27 H 1.09000 * 109.47725 * 89.99610 * 1 2 3 28 28 H 1.09005 * 109.47129 * 209.99766 * 1 2 3 29 29 H 1.09001 * 109.47311 * 329.99117 * 1 2 3 30 30 H 1.07996 * 126.58019 * 0.02562 * 3 2 1 31 31 H 0.96993 * 119.99423 * 359.97438 * 7 5 4 32 32 H 1.09001 * 110.40332 * 202.84267 * 9 8 7 33 33 H 1.08992 * 110.40869 * 325.16294 * 9 8 7 34 34 H 1.08997 * 110.19423 * 248.13905 * 10 9 8 35 35 H 1.09002 * 110.17104 * 126.33618 * 10 9 8 36 36 H 1.09002 * 110.97072 * 266.12667 * 11 10 9 37 37 H 1.09003 * 110.97182 * 142.40076 * 11 10 9 38 38 H 0.96995 * 119.99964 * 179.97438 * 18 17 15 39 39 H 1.08991 * 110.04996 * 110.60342 * 23 14 12 40 40 H 1.08998 * 110.04512 * 232.07808 * 23 14 12 41 41 H 1.09004 * 111.15107 * 168.13153 * 24 8 7 42 42 H 1.09005 * 111.18511 * 43.93077 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2686 1.0824 0.0000 4 6 3.5542 0.6207 -0.0006 5 6 4.7704 1.4557 -0.0013 6 8 4.6755 2.6679 -0.0010 7 7 5.9866 0.8749 -0.0024 8 6 7.1943 1.7042 -0.0026 9 6 7.3542 2.4495 1.3036 10 6 8.0521 1.4314 2.2543 11 6 8.4244 0.2014 1.3649 12 6 8.4996 0.8230 -0.0038 13 1 9.3399 1.5171 -0.0154 14 7 8.4429 0.1721 -1.2724 15 6 8.8327 -1.1082 -1.5622 16 1 9.2341 -1.7398 -0.7833 17 6 8.7121 -1.5944 -2.8568 18 7 8.2226 -0.8248 -3.8058 19 14 9.2432 -3.3412 -3.2518 20 1 8.0938 -4.2624 -3.0642 21 1 9.7083 -3.4105 -4.6604 22 1 10.3497 -3.7391 -2.3450 23 6 7.8701 1.1750 -2.2186 24 6 7.3925 2.3825 -1.3499 25 7 3.5238 -0.7230 -0.0065 26 7 2.3008 -1.1257 -0.0008 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5140 30 1 1.9560 2.1162 0.0004 31 1 6.0622 -0.0920 -0.0023 32 1 7.9809 3.3304 1.1642 33 1 6.3800 2.7357 1.6996 34 1 7.3689 1.1282 3.0476 35 1 8.9527 1.8724 2.6814 36 1 7.6450 -0.5596 1.4055 37 1 9.3884 -0.2145 1.6580 38 1 8.1386 -1.1644 -4.7104 39 1 8.6337 1.5014 -2.9245 40 1 7.0252 0.7429 -2.7546 41 1 8.1604 3.1540 -1.2926 42 1 6.4550 2.7916 -1.7266 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990513850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:34 Heat of formation + Delta-G solvation = 107.527745 kcal Electronic energy + Delta-G solvation = -26158.040942 eV Core-core repulsion = 22562.762523 eV Total energy + Delta-G solvation = -3595.278419 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.10422 -40.29679 -37.87386 -34.69842 -34.35929 -32.91464 -31.66899 -30.86562 -29.73650 -27.92469 -26.87333 -25.75954 -24.04399 -23.47666 -22.19226 -20.71391 -20.38524 -19.55960 -18.61756 -17.94186 -16.41958 -16.23528 -16.07127 -15.71770 -14.85067 -14.69694 -14.49777 -14.23043 -14.01819 -13.84965 -13.62598 -13.33029 -13.09094 -12.53869 -12.27013 -12.07515 -11.83672 -11.35131 -11.31785 -11.16316 -10.94579 -10.85649 -10.73559 -10.45099 -10.39548 -10.23489 -9.97459 -9.90771 -9.67286 -9.61779 -9.21562 -9.15093 -8.60089 -8.38568 -6.80365 -5.68522 -3.02824 1.16715 1.92724 2.02321 3.44315 3.49396 3.50691 3.58338 3.70321 4.27176 4.33692 4.51517 4.68893 4.71318 4.84594 4.98151 5.07205 5.29327 5.31678 5.36897 5.54334 5.66747 5.76446 5.87260 5.91583 6.01372 6.07277 6.20274 6.29721 6.31136 6.38006 6.42896 6.48825 6.56542 6.71616 6.88742 6.96700 7.23687 7.56696 7.66617 7.83850 7.93206 8.21255 8.25848 8.70279 9.19307 9.86161 10.54491 11.43928 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.005570 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.863604 B = 5026.130246 C = 6349.632737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.370 5.370 3 C 0.085 3.915 4 C -0.092 4.092 5 C 0.601 3.399 6 O -0.551 6.551 7 N -0.670 5.670 8 C 0.129 3.871 9 C -0.111 4.111 10 C -0.117 4.117 11 C -0.116 4.116 12 C 0.160 3.840 13 H 0.023 0.977 14 N -0.583 5.583 15 C -0.230 4.230 16 H 0.079 0.921 17 C -0.003 4.003 18 N -0.919 5.919 19 Si 0.909 3.091 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.178 3.822 24 C -0.139 4.139 25 N -0.195 5.195 26 N -0.070 5.070 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.203 0.797 31 H 0.412 0.588 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.252 0.748 39 H 0.035 0.965 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.054 5.950 10.124 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.155 5.155 3 C -0.071 4.071 4 C -0.231 4.231 5 C 0.384 3.616 6 O -0.429 6.429 7 N -0.319 5.319 8 C 0.041 3.959 9 C -0.150 4.150 10 C -0.155 4.155 11 C -0.155 4.155 12 C 0.049 3.951 13 H 0.040 0.960 14 N -0.306 5.306 15 C -0.358 4.358 16 H 0.097 0.903 17 C -0.200 4.200 18 N -0.566 5.566 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.054 3.946 24 C -0.178 4.178 25 N -0.069 5.069 26 N -0.051 5.051 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.220 0.780 31 H 0.249 0.751 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.045 5.096 9.890 17.145 hybrid contribution -0.045 -0.355 -0.449 0.574 sum -13.090 4.741 9.441 16.821 Atomic orbital electron populations 1.22130 0.72937 1.05477 1.04617 1.50377 1.08947 1.05889 1.50291 1.23315 0.90252 0.94806 0.98760 1.21699 0.94898 0.90387 1.16165 1.16713 0.81789 0.86250 0.76799 1.90743 1.86788 1.12927 1.52488 1.45521 1.03803 1.11204 1.71420 1.21600 0.86524 0.93700 0.94055 1.21884 1.00867 0.97585 0.94651 1.22836 0.99562 0.95475 0.97605 1.21852 1.01324 0.97185 0.95099 1.20836 0.93134 0.93128 0.87957 0.95971 1.43670 1.73416 1.11262 1.02295 1.19009 1.35389 0.87216 0.94145 0.90269 1.24774 1.01158 0.98149 0.95896 1.69918 1.50457 1.35004 1.01183 0.86170 0.78159 0.84428 0.77320 1.21553 1.21800 1.20703 1.22019 0.97515 0.84986 0.90088 1.22799 1.00924 0.98760 0.95287 1.74720 1.12457 1.10470 1.09237 1.82024 0.93623 1.06375 1.23051 0.89384 0.88264 0.88608 0.78012 0.75088 0.91049 0.91206 0.92279 0.91946 0.91477 0.91736 0.93768 0.94644 0.91704 0.91564 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 11.51 59.84 0.69 1.16 16 2 N -0.37 -4.16 4.03 -67.86 -0.27 -4.43 16 3 C 0.09 1.04 11.31 -16.83 -0.19 0.85 16 4 C -0.09 -1.51 6.99 -83.55 -0.58 -2.10 16 5 C 0.60 11.02 7.14 -12.47 -0.09 10.93 16 6 O -0.55 -10.61 15.02 5.29 0.08 -10.53 16 7 N -0.67 -12.85 4.39 -47.61 -0.21 -13.06 16 8 C 0.13 2.44 0.40 -130.71 -0.05 2.38 16 9 C -0.11 -1.79 6.04 -26.13 -0.16 -1.95 16 10 C -0.12 -1.70 6.94 -23.47 -0.16 -1.87 16 11 C -0.12 -2.02 6.46 -26.21 -0.17 -2.19 16 12 C 0.16 3.28 2.64 -68.72 -0.18 3.10 16 13 H 0.02 0.48 7.94 -51.93 -0.41 0.07 16 14 N -0.58 -14.52 3.12 -162.68 -0.51 -15.02 16 15 C -0.23 -6.26 10.29 -15.06 -0.15 -6.42 16 16 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 17 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 18 N -0.92 -27.05 10.55 55.49 0.59 -26.47 16 19 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.18 4.36 5.33 -0.75 0.00 4.36 16 24 C -0.14 -2.81 6.19 -25.44 -0.16 -2.97 16 25 N -0.20 -3.48 12.04 32.85 0.40 -3.09 16 26 N -0.07 -1.10 13.78 60.35 0.83 -0.27 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.20 1.74 8.06 -52.49 -0.42 1.31 16 31 H 0.41 8.47 7.49 -40.82 -0.31 8.16 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.16 6.86 -51.93 -0.36 0.80 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.21 7.38 -51.93 -0.38 0.83 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.04 0.94 7.98 -51.93 -0.41 0.53 16 40 H 0.06 1.79 7.05 -51.93 -0.37 1.43 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.41 7.18 -51.93 -0.37 1.04 16 LS Contribution 341.75 15.07 5.15 5.15 Total: -1.00 -33.59 341.75 -6.24 -39.83 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.96 Total: 5.50 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.31 Total: 5.11 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 0.82 Total: -62.34 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.59 -6.24 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990513850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.362 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds