Wall clock time and date at job start Fri Apr 10 2020 17:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38503 * 119.99956 * 180.02562 * 2 1 3 5 5 C 1.39599 * 120.04942 * 4.99934 * 4 2 1 6 6 C 1.38286 * 118.03123 * 180.02562 * 5 4 2 7 7 C 1.40075 * 117.98970 * 359.97438 * 6 5 4 8 8 C 1.47858 * 120.09272 * 179.97438 * 7 6 5 9 9 O 1.21558 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00146 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00258 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.88225 * 31.12490 * 11 10 8 13 13 C 1.55161 * 111.00408 * 155.00192 * 11 10 8 14 14 C 1.54323 * 102.93854 * 153.57733 * 13 11 10 15 15 N 1.47019 * 107.27626 * 337.80846 * 14 13 11 16 16 C 1.36938 * 125.64815 * 178.95909 * 15 14 13 17 17 H 1.08005 * 119.99414 * 179.97438 * 16 15 14 18 18 C 1.38804 * 120.00159 * 359.97438 * 16 15 14 19 19 N 1.31620 * 120.00222 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00113 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46992 * 60.00349 * 20 18 16 22 22 H 1.48503 * 109.47401 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47320 * 300.00561 * 20 18 16 24 24 C 1.47425 * 108.70018 * 358.94198 * 15 14 13 25 25 N 1.32753 * 119.81276 * 359.97438 * 7 6 5 26 26 N 1.28365 * 122.10059 * 359.71698 * 25 7 6 27 27 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 29 29 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 30 30 H 1.08994 * 109.47354 * 90.00240 * 3 2 1 31 31 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 32 32 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 33 33 H 1.08002 * 120.98947 * 0.02562 * 5 4 2 34 34 H 1.08000 * 121.00663 * 179.97438 * 6 5 4 35 35 H 0.97001 * 119.99440 * 0.02562 * 10 8 7 36 36 H 1.08995 * 110.72216 * 271.94440 * 13 11 10 37 37 H 1.08998 * 110.71882 * 35.04293 * 13 11 10 38 38 H 1.09007 * 109.88354 * 97.22794 * 14 13 11 39 39 H 1.09001 * 109.88363 * 218.38988 * 14 13 11 40 40 H 0.97004 * 120.00259 * 179.97438 * 19 18 16 41 41 H 1.08997 * 110.36740 * 265.28782 * 24 15 14 42 42 H 1.09001 * 110.36617 * 142.96411 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1575 -1.1995 -0.0005 5 6 1.4645 -2.4067 -0.1064 6 6 2.1975 -3.5793 -0.1021 7 6 3.5906 -3.4834 0.0076 8 6 4.4196 -4.7077 0.0175 9 8 3.8923 -5.7994 -0.0702 10 7 5.7599 -4.6132 0.1226 11 6 6.5812 -5.8262 0.1330 12 1 6.1197 -6.6130 -0.4638 13 6 8.0216 -5.5268 -0.3600 14 6 8.8588 -6.6222 0.3333 15 7 8.0951 -7.0808 1.5029 16 6 8.4834 -8.0629 2.3746 17 1 7.8484 -8.3277 3.2072 18 6 9.6928 -8.7180 2.1882 19 7 10.4668 -8.3949 1.1738 20 14 10.2228 -10.0572 3.3777 21 1 9.2179 -11.1506 3.3716 22 1 11.5428 -10.5951 2.9614 23 1 10.3290 -9.4902 4.7461 24 6 6.8422 -6.3078 1.5819 25 7 4.1645 -2.2901 0.1028 26 7 3.4828 -1.2025 0.0928 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 2.3792 1.5834 1.0276 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 0.3878 -2.4244 -0.1891 34 1 1.7105 -4.5401 -0.1810 35 1 6.1807 -3.7420 0.1922 36 1 8.0856 -5.6207 -1.4440 37 1 8.3400 -4.5344 -0.0408 38 1 9.0219 -7.4539 -0.3522 39 1 9.8158 -6.2103 0.6538 40 1 11.3122 -8.8524 1.0437 41 1 6.9643 -5.4546 2.2491 42 1 6.0252 -6.9435 1.9233 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016007684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:01 Heat of formation + Delta-G solvation = 70.075026 kcal Electronic energy + Delta-G solvation = -24215.345996 eV Core-core repulsion = 20618.443506 eV Total energy + Delta-G solvation = -3596.902491 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32425 -39.39287 -37.53398 -37.05835 -34.06027 -33.31123 -32.20821 -31.39980 -29.10209 -28.93712 -27.36072 -26.20480 -24.78538 -24.32655 -22.79028 -21.13785 -20.27223 -19.91574 -18.40308 -17.78836 -17.44625 -16.70528 -16.10731 -15.84604 -15.10007 -15.01051 -14.83197 -14.56656 -14.20440 -14.15082 -13.84596 -13.59916 -13.12193 -12.87914 -12.73917 -12.43730 -12.34683 -12.15821 -11.89931 -11.73071 -11.03237 -10.92966 -10.85699 -10.69563 -10.46625 -10.34476 -10.09381 -9.92537 -9.83563 -9.78179 -9.63630 -8.71448 -8.53891 -8.28162 -6.78030 -5.65662 -2.99083 0.50693 0.62561 2.28743 2.74140 3.23867 3.46186 3.49775 3.51399 3.64810 3.92169 4.17113 4.33109 4.47362 4.56176 4.58887 4.76871 4.83076 4.89298 5.06904 5.15274 5.31079 5.35454 5.41385 5.49856 5.55777 5.67880 5.77139 5.82692 5.87038 6.25903 6.40183 6.44585 6.50906 6.63087 6.64675 6.74877 7.03329 7.59727 7.64541 7.73169 7.87468 8.29444 8.34868 8.50602 9.27496 9.87389 10.52790 11.46190 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.036184 B = 0.002470 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.646306 B =11334.717136 C =11539.788583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.603 5.603 3 C 0.094 3.906 4 C 0.350 3.650 5 C -0.190 4.190 6 C -0.023 4.023 7 C -0.027 4.027 8 C 0.578 3.422 9 O -0.536 6.536 10 N -0.695 5.695 11 C 0.125 3.875 12 H 0.099 0.901 13 C -0.150 4.150 14 C 0.180 3.820 15 N -0.604 5.604 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.129 3.871 25 N -0.165 5.165 26 N -0.302 5.302 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.162 0.838 35 H 0.408 0.592 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.253 0.747 41 H 0.021 0.979 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.839 19.647 -5.248 29.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.316 5.316 3 C -0.048 4.048 4 C 0.110 3.890 5 C -0.223 4.223 6 C -0.052 4.052 7 C -0.178 4.178 8 C 0.361 3.639 9 O -0.412 6.412 10 N -0.344 5.344 11 C 0.020 3.980 12 H 0.117 0.883 13 C -0.188 4.188 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.354 4.354 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.002 3.998 25 N -0.011 5.011 26 N -0.156 5.156 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.169 0.831 34 H 0.179 0.821 35 H 0.244 0.756 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.735 19.747 -5.152 28.390 hybrid contribution -0.883 -0.972 0.552 1.424 sum -20.618 18.775 -4.600 28.262 Atomic orbital electron populations 1.21832 0.77896 1.03581 1.02081 1.46094 1.05484 1.02998 1.76998 1.21713 0.97646 0.83397 1.02094 1.20140 0.91484 0.87013 0.90350 1.21795 1.01997 0.91056 1.07482 1.22192 0.92952 1.00073 0.89933 1.22574 0.93646 0.94479 1.07107 1.17443 0.82492 0.86759 0.77173 1.90806 1.72683 1.27050 1.50638 1.45869 1.05631 1.10942 1.71997 1.22400 0.90445 0.86006 0.99129 0.88305 1.23194 0.94266 1.01023 1.00363 1.21151 0.92619 0.92633 0.88149 1.44384 1.17359 1.41436 1.29891 1.19026 1.02012 1.09864 1.04510 0.90444 1.24801 0.97151 1.00067 0.98510 1.69940 1.12673 1.44175 1.30368 0.86171 0.77602 0.81620 0.80200 1.21152 1.21624 1.21209 1.21829 0.90163 0.94759 0.93093 1.72990 1.30081 0.94427 1.03644 1.73159 1.03501 1.19639 1.19349 0.92311 0.90377 0.90842 0.92639 0.89972 0.91268 0.83056 0.82077 0.75650 0.91531 0.91810 0.93210 0.93529 0.93709 0.96097 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 10.07 59.85 0.60 0.91 16 2 N -0.60 -4.31 3.38 -189.54 -0.64 -4.95 16 3 C 0.09 0.56 10.42 59.85 0.62 1.18 16 4 C 0.35 3.54 7.44 -154.94 -1.15 2.39 16 5 C -0.19 -1.66 9.24 -39.06 -0.36 -2.02 16 6 C -0.02 -0.25 9.71 -38.88 -0.38 -0.63 16 7 C -0.03 -0.37 6.83 -82.84 -0.57 -0.94 16 8 C 0.58 9.50 7.80 -12.32 -0.10 9.40 16 9 O -0.54 -10.24 16.02 5.31 0.09 -10.15 16 10 N -0.69 -11.29 5.19 -52.66 -0.27 -11.57 16 11 C 0.13 2.39 3.42 -65.78 -0.23 2.16 16 12 H 0.10 2.03 7.54 -51.93 -0.39 1.64 16 13 C -0.15 -2.82 6.60 -24.90 -0.16 -2.99 16 14 C 0.18 4.43 5.37 -3.07 -0.02 4.41 16 15 N -0.60 -16.03 3.39 -170.08 -0.58 -16.61 16 16 C -0.23 -6.51 10.28 -15.06 -0.15 -6.67 16 17 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.57 10.31 55.49 0.57 -26.99 16 20 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 C 0.13 2.89 6.93 -2.53 -0.02 2.87 16 25 N -0.16 -2.31 10.73 33.32 0.36 -1.95 16 26 N -0.30 -3.87 10.34 31.21 0.32 -3.55 16 27 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 28 H 0.08 0.15 8.07 -51.93 -0.42 -0.27 16 29 H 0.07 0.21 6.41 -51.93 -0.33 -0.12 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.60 7.45 -51.93 -0.39 0.22 16 32 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 33 H 0.15 0.78 6.36 -52.49 -0.33 0.45 16 34 H 0.16 1.56 7.71 -52.49 -0.40 1.16 16 35 H 0.41 5.95 7.91 -40.82 -0.32 5.63 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.09 8.00 -51.93 -0.42 0.68 16 38 H 0.05 1.35 7.38 -51.93 -0.38 0.96 16 39 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 40 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -34.62 349.10 -7.78 -42.39 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.86 Total: 0.79 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -2.00 Total: 9.73 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.24 Total: -65.63 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.62 -7.78 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016007684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.469 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds