Wall clock time and date at job start Fri Apr 10 2020 17:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38503 * 119.99956 * 180.02562 * 2 1 3 5 5 C 1.39599 * 120.04942 * 4.99934 * 4 2 1 6 6 C 1.38286 * 118.03123 * 180.02562 * 5 4 2 7 7 C 1.40075 * 117.98970 * 359.97438 * 6 5 4 8 8 C 1.47858 * 120.09272 * 179.97438 * 7 6 5 9 9 O 1.21558 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00146 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00258 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.88225 * 31.12490 * 11 10 8 13 13 C 1.55161 * 111.00408 * 155.00192 * 11 10 8 14 14 C 1.54323 * 102.93854 * 153.57733 * 13 11 10 15 15 N 1.47019 * 107.27626 * 337.80846 * 14 13 11 16 16 C 1.36938 * 125.64815 * 178.95909 * 15 14 13 17 17 H 1.08005 * 119.99414 * 179.97438 * 16 15 14 18 18 C 1.38804 * 120.00159 * 359.97438 * 16 15 14 19 19 N 1.31620 * 120.00222 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00113 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46992 * 60.00349 * 20 18 16 22 22 H 1.48503 * 109.47401 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47320 * 300.00561 * 20 18 16 24 24 C 1.47425 * 108.70018 * 358.94198 * 15 14 13 25 25 N 1.32753 * 119.81276 * 359.97438 * 7 6 5 26 26 N 1.28365 * 122.10059 * 359.71698 * 25 7 6 27 27 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 29 29 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 30 30 H 1.08994 * 109.47354 * 90.00240 * 3 2 1 31 31 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 32 32 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 33 33 H 1.08002 * 120.98947 * 0.02562 * 5 4 2 34 34 H 1.08000 * 121.00663 * 179.97438 * 6 5 4 35 35 H 0.97001 * 119.99440 * 0.02562 * 10 8 7 36 36 H 1.08995 * 110.72216 * 271.94440 * 13 11 10 37 37 H 1.08998 * 110.71882 * 35.04293 * 13 11 10 38 38 H 1.09007 * 109.88354 * 97.22794 * 14 13 11 39 39 H 1.09001 * 109.88363 * 218.38988 * 14 13 11 40 40 H 0.97004 * 120.00259 * 179.97438 * 19 18 16 41 41 H 1.08997 * 110.36740 * 265.28782 * 24 15 14 42 42 H 1.09001 * 110.36617 * 142.96411 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1575 -1.1995 -0.0005 5 6 1.4645 -2.4067 -0.1064 6 6 2.1975 -3.5793 -0.1021 7 6 3.5906 -3.4834 0.0076 8 6 4.4196 -4.7077 0.0175 9 8 3.8923 -5.7994 -0.0702 10 7 5.7599 -4.6132 0.1226 11 6 6.5812 -5.8262 0.1330 12 1 6.1197 -6.6130 -0.4638 13 6 8.0216 -5.5268 -0.3600 14 6 8.8588 -6.6222 0.3333 15 7 8.0951 -7.0808 1.5029 16 6 8.4834 -8.0629 2.3746 17 1 7.8484 -8.3277 3.2072 18 6 9.6928 -8.7180 2.1882 19 7 10.4668 -8.3949 1.1738 20 14 10.2228 -10.0572 3.3777 21 1 9.2179 -11.1506 3.3716 22 1 11.5428 -10.5951 2.9614 23 1 10.3290 -9.4902 4.7461 24 6 6.8422 -6.3078 1.5819 25 7 4.1645 -2.2901 0.1028 26 7 3.4828 -1.2025 0.0928 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 2.3792 1.5834 1.0276 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 0.3878 -2.4244 -0.1891 34 1 1.7105 -4.5401 -0.1810 35 1 6.1807 -3.7420 0.1922 36 1 8.0856 -5.6207 -1.4440 37 1 8.3400 -4.5344 -0.0408 38 1 9.0219 -7.4539 -0.3522 39 1 9.8158 -6.2103 0.6538 40 1 11.3122 -8.8524 1.0437 41 1 6.9643 -5.4546 2.2491 42 1 6.0252 -6.9435 1.9233 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016007684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:01 Heat of formation + Delta-G solvation = 45.582110 kcal Electronic energy + Delta-G solvation = -24216.408089 eV Core-core repulsion = 20618.443506 eV Total energy + Delta-G solvation = -3597.964583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.20424 -40.70761 -38.92805 -38.03882 -35.69015 -34.16141 -33.87070 -32.55130 -30.97221 -29.36665 -28.97122 -27.24363 -26.28899 -25.51875 -23.61515 -22.41627 -21.99784 -21.59452 -19.54799 -18.91383 -18.50384 -18.11015 -17.34191 -16.82897 -16.66935 -16.10709 -15.89592 -15.82815 -15.58887 -15.22257 -14.92656 -14.73558 -14.27851 -14.14268 -13.94279 -13.69399 -13.43677 -13.28182 -12.96445 -12.93190 -12.74018 -12.66005 -12.43141 -12.13832 -12.07261 -11.80599 -11.71706 -11.58397 -11.30081 -11.18535 -10.73129 -10.70671 -10.16482 -8.94048 -8.90715 -7.85347 -5.21998 -0.39583 -0.16816 1.46080 1.50194 1.56347 1.63569 1.70915 1.99428 2.50744 2.66489 2.99221 3.32831 3.45714 3.58598 3.66835 3.70045 3.86866 3.99985 4.04733 4.19131 4.21282 4.42142 4.50393 4.57131 4.61728 4.71222 4.74560 4.80289 4.86629 4.90731 4.94234 4.97462 5.04403 5.06295 5.42194 5.47807 5.64130 5.73591 5.92930 6.00106 6.18562 6.44793 7.06426 7.09842 7.62055 7.74487 8.38620 9.24710 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.036184 B = 0.002470 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.646306 B =11334.717136 C =11539.788583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.596 5.596 3 C 0.089 3.911 4 C 0.344 3.656 5 C -0.171 4.171 6 C -0.030 4.030 7 C -0.048 4.048 8 C 0.581 3.419 9 O -0.568 6.568 10 N -0.688 5.688 11 C 0.144 3.856 12 H 0.085 0.915 13 C -0.130 4.130 14 C 0.186 3.814 15 N -0.625 5.625 16 C -0.248 4.248 17 H 0.079 0.921 18 C -0.064 4.064 19 N -0.949 5.949 20 Si 0.982 3.018 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.128 3.872 25 N -0.180 5.180 26 N -0.329 5.329 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.193 0.807 34 H 0.171 0.829 35 H 0.418 0.582 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.249 0.751 41 H 0.028 0.972 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.417 21.534 -5.262 32.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.307 5.307 3 C -0.053 4.053 4 C 0.102 3.898 5 C -0.204 4.204 6 C -0.058 4.058 7 C -0.200 4.200 8 C 0.366 3.634 9 O -0.446 6.446 10 N -0.338 5.338 11 C 0.038 3.962 12 H 0.103 0.897 13 C -0.169 4.169 14 C 0.060 3.940 15 N -0.352 5.352 16 C -0.377 4.377 17 H 0.096 0.904 18 C -0.257 4.257 19 N -0.598 5.598 20 Si 0.810 3.190 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.203 1.203 24 C 0.002 3.998 25 N -0.027 5.027 26 N -0.184 5.184 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.210 0.790 34 H 0.188 0.812 35 H 0.255 0.745 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -22.373 21.712 -5.165 31.602 hybrid contribution -0.239 -1.373 0.567 1.505 sum -22.613 20.339 -4.597 30.760 Atomic orbital electron populations 1.22171 0.75364 1.05188 1.03560 1.46516 1.07036 1.02309 1.74832 1.21833 0.97523 0.83588 1.02392 1.20453 0.90984 0.88746 0.89589 1.22151 1.03676 0.89452 1.05142 1.22333 0.91877 1.01456 0.90137 1.22228 0.94471 0.93350 1.09954 1.17812 0.82333 0.87373 0.75885 1.90780 1.73199 1.28564 1.52039 1.45672 1.05677 1.10263 1.72206 1.21927 0.90938 0.86854 0.96451 0.89681 1.23017 0.92655 0.99966 1.01225 1.20936 0.92579 0.93069 0.87371 1.44671 1.18967 1.41538 1.30040 1.19398 1.02409 1.10711 1.05160 0.90356 1.25678 0.97219 1.02437 1.00382 1.70158 1.12703 1.45080 1.31834 0.85104 0.76943 0.78756 0.78212 1.20387 1.21653 1.20256 1.21920 0.88225 0.94237 0.95461 1.72895 1.31065 0.94649 1.04120 1.73060 1.05217 1.19068 1.21047 0.90768 0.88378 0.89778 0.92476 0.91788 0.88279 0.79009 0.81166 0.74473 0.89073 0.89459 0.96451 0.96444 0.94172 0.95420 0.95065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.21 10.07 127.77 1.29 1.50 16 2 N -0.60 -6.66 3.38 -753.58 -2.54 -9.21 16 3 C 0.09 0.83 10.42 127.77 1.33 2.17 16 4 C 0.34 6.18 7.44 133.21 0.99 7.17 16 5 C -0.17 -2.50 9.24 22.61 0.21 -2.29 16 6 C -0.03 -0.61 9.71 22.73 0.22 -0.39 16 7 C -0.05 -1.31 6.83 42.00 0.29 -1.02 16 8 C 0.58 19.10 7.80 86.79 0.68 19.78 16 9 O -0.57 -21.92 16.02 -3.90 -0.06 -21.99 16 10 N -0.69 -22.17 5.19 -438.80 -2.28 -24.44 16 11 C 0.14 5.53 3.42 46.38 0.16 5.69 16 12 H 0.09 3.54 7.54 -2.38 -0.02 3.53 16 13 C -0.13 -4.85 6.60 31.78 0.21 -4.64 16 14 C 0.19 9.44 5.37 86.73 0.47 9.90 16 15 N -0.63 -34.14 3.39 -692.00 -2.35 -36.49 16 16 C -0.25 -14.65 10.28 84.03 0.86 -13.79 16 17 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 18 C -0.06 -3.77 5.49 84.86 0.47 -3.30 16 19 N -0.95 -58.30 10.31 21.65 0.22 -58.08 16 20 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 C 0.13 5.85 6.93 86.85 0.60 6.45 16 25 N -0.18 -4.98 10.73 -48.50 -0.52 -5.50 16 26 N -0.33 -8.10 10.34 -55.17 -0.57 -8.67 16 27 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.10 -0.06 8.07 -2.39 -0.02 -0.08 16 29 H 0.08 0.09 6.41 -2.38 -0.02 0.07 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.87 7.45 -2.39 -0.02 0.85 16 32 H 0.10 0.34 8.07 -2.38 -0.02 0.33 16 33 H 0.19 1.09 6.36 -2.91 -0.02 1.07 16 34 H 0.17 3.07 7.71 -2.91 -0.02 3.05 16 35 H 0.42 11.91 7.91 -92.71 -0.73 11.17 16 36 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.09 2.87 8.00 -2.39 -0.02 2.85 16 38 H 0.02 0.98 7.38 -2.38 -0.02 0.96 16 39 H 0.02 0.97 7.51 -2.39 -0.02 0.95 16 40 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -78.00 349.10 2.01 -76.00 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.31 Total: 11.91 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: 7.77 Total: 27.22 kcal Atomic # 7 Polarization: -134.35 SS G_CDS: -8.04 Total: -142.39 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.06 Total: -21.99 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -78.00 2.01 -76.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016007684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.579 kcal (2) G-P(sol) polarization free energy of solvation -78.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds