Wall clock time and date at job start Fri Apr 10 2020 17:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00283 * 2 1 4 4 C 1.38515 * 119.99587 * 179.97438 * 2 1 3 5 5 C 1.39596 * 120.04846 * 352.28316 * 4 2 1 6 6 C 1.38292 * 118.02450 * 179.70332 * 5 4 2 7 7 C 1.40070 * 117.99395 * 0.52632 * 6 5 4 8 8 C 1.47858 * 120.09686 * 179.73438 * 7 6 5 9 9 O 1.21556 * 119.99995 * 359.72798 * 8 7 6 10 10 N 1.34773 * 120.00235 * 179.72409 * 8 7 6 11 11 C 1.46498 * 120.00232 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.88607 * 322.57297 * 11 10 8 13 13 C 1.55157 * 111.00474 * 198.65158 * 11 10 8 14 14 C 1.54331 * 102.94166 * 277.42460 * 13 11 10 15 15 N 1.47025 * 107.26840 * 337.80940 * 14 13 11 16 16 C 1.36938 * 125.64312 * 178.90553 * 15 14 13 17 17 H 1.08006 * 119.99387 * 180.02562 * 16 15 14 18 18 C 1.38808 * 120.00569 * 0.02562 * 16 15 14 19 19 N 1.31624 * 119.99562 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00341 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47130 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47093 * 119.99737 * 20 18 16 23 23 H 1.48497 * 109.47314 * 240.00266 * 20 18 16 24 24 C 1.47423 * 108.70749 * 358.93730 * 15 14 13 25 25 N 1.32757 * 119.80416 * 359.45880 * 7 6 5 26 26 N 1.28354 * 122.11051 * 0.28143 * 25 7 6 27 27 H 1.08998 * 109.47135 * 174.59774 * 1 2 3 28 28 H 1.09003 * 109.46649 * 294.59123 * 1 2 3 29 29 H 1.09001 * 109.47007 * 54.59136 * 1 2 3 30 30 H 1.09005 * 109.47120 * 270.00190 * 3 2 1 31 31 H 1.08998 * 109.46841 * 29.99718 * 3 2 1 32 32 H 1.08993 * 109.47212 * 150.00144 * 3 2 1 33 33 H 1.08001 * 120.98759 * 359.95243 * 5 4 2 34 34 H 1.08003 * 121.00402 * 180.26036 * 6 5 4 35 35 H 0.97002 * 119.99589 * 0.02562 * 10 8 7 36 36 H 1.08996 * 110.72166 * 159.06310 * 13 11 10 37 37 H 1.08997 * 110.71839 * 35.78668 * 13 11 10 38 38 H 1.08997 * 109.88224 * 218.38950 * 14 13 11 39 39 H 1.09001 * 109.88265 * 97.22052 * 14 13 11 40 40 H 0.97000 * 119.99486 * 179.97438 * 19 18 16 41 41 H 1.08997 * 110.37039 * 142.96775 * 24 15 14 42 42 H 1.08997 * 110.36791 * 265.18340 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1575 -1.1996 0.0005 5 6 1.4700 -2.4036 0.1633 6 6 2.2021 -3.5767 0.1510 7 6 3.5901 -3.4838 -0.0128 8 6 4.4186 -4.7084 -0.0270 9 8 3.8959 -5.7975 0.1086 10 7 5.7533 -4.6172 -0.1903 11 6 6.5741 -5.8306 -0.2049 12 1 6.2008 -6.5609 0.5130 13 6 8.0651 -5.4966 0.0644 14 6 8.5786 -5.0630 -1.3249 15 7 7.6733 -5.6457 -2.3262 16 6 7.7704 -5.4801 -3.6820 17 1 7.0521 -5.9517 -4.3364 18 6 8.7918 -4.7062 -4.2155 19 7 9.6674 -4.1318 -3.4180 20 14 8.9238 -4.4798 -6.0650 21 1 7.8258 -5.2227 -6.7342 22 1 8.8173 -3.0360 -6.3958 23 1 10.2326 -5.0002 -6.5353 24 6 6.6434 -6.4370 -1.6288 25 7 4.1588 -2.2935 -0.1608 26 7 3.4770 -1.2060 -0.1544 27 1 -0.3633 -1.0231 -0.0968 28 1 -0.3633 0.4277 0.9345 29 1 -0.3633 0.5954 -0.8376 30 1 2.3792 1.5833 -1.0277 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 0.3976 -2.4186 0.2910 34 1 1.7187 -4.5354 0.2686 35 1 6.1704 -3.7481 -0.2982 36 1 8.6006 -6.3787 0.4154 37 1 8.1541 -4.6798 0.7806 38 1 9.5911 -5.4360 -1.4789 39 1 8.5661 -3.9758 -1.4020 40 1 10.3814 -3.5913 -3.7908 41 1 5.6817 -6.3353 -2.1316 42 1 6.9374 -7.4855 -1.5824 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016007685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:02 Heat of formation + Delta-G solvation = 48.178887 kcal Electronic energy + Delta-G solvation = -24793.520369 eV Core-core repulsion = 21195.668391 eV Total energy + Delta-G solvation = -3597.851979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.20608 -40.71881 -38.87364 -38.03997 -35.46499 -34.17012 -33.76827 -32.49071 -30.95529 -29.40169 -29.03553 -27.23482 -26.34576 -25.54563 -23.71170 -22.44581 -21.90489 -21.26542 -19.56035 -18.84138 -18.54242 -18.11530 -17.31453 -16.83366 -16.64115 -16.08494 -15.95970 -15.65355 -15.60019 -15.32231 -14.97375 -14.90801 -14.34047 -13.96474 -13.83312 -13.56648 -13.40390 -13.22843 -12.93644 -12.89873 -12.83041 -12.62738 -12.27536 -12.10653 -11.99631 -11.81179 -11.75306 -11.61044 -11.30068 -11.12563 -10.71861 -10.70239 -10.10438 -8.94429 -8.84205 -7.84207 -5.18217 -0.38403 -0.16220 1.44096 1.45233 1.55272 1.65594 1.71282 2.11380 2.49257 2.67839 3.02252 3.34621 3.47431 3.59695 3.67619 3.69120 3.80982 3.98565 4.09220 4.19318 4.32886 4.40622 4.50495 4.60786 4.68923 4.72210 4.74260 4.75727 4.89222 4.91188 4.94716 5.00804 5.03137 5.04919 5.44480 5.54359 5.68597 5.78221 5.92408 5.99744 6.21225 6.48253 7.07677 7.12545 7.64345 7.78456 8.42574 9.26079 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.003691 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.866592 B = 7584.133444 C = 8651.824217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.598 5.598 3 C 0.091 3.909 4 C 0.341 3.659 5 C -0.172 4.172 6 C -0.029 4.029 7 C -0.050 4.050 8 C 0.581 3.419 9 O -0.565 6.565 10 N -0.687 5.687 11 C 0.139 3.861 12 H 0.112 0.888 13 C -0.133 4.133 14 C 0.183 3.817 15 N -0.622 5.622 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.062 4.062 19 N -0.946 5.946 20 Si 0.975 3.025 21 H -0.271 1.271 22 H -0.293 1.293 23 H -0.288 1.288 24 C 0.123 3.877 25 N -0.189 5.189 26 N -0.334 5.334 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.198 0.802 34 H 0.177 0.823 35 H 0.410 0.590 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.012 0.988 39 H 0.014 0.986 40 H 0.247 0.753 41 H 0.026 0.974 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.053 8.520 12.138 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.310 5.310 3 C -0.052 4.052 4 C 0.100 3.900 5 C -0.205 4.205 6 C -0.057 4.057 7 C -0.202 4.202 8 C 0.366 3.634 9 O -0.444 6.444 10 N -0.336 5.336 11 C 0.034 3.966 12 H 0.130 0.870 13 C -0.172 4.172 14 C 0.059 3.941 15 N -0.348 5.348 16 C -0.370 4.370 17 H 0.091 0.909 18 C -0.255 4.255 19 N -0.595 5.595 20 Si 0.804 3.196 21 H -0.195 1.195 22 H -0.220 1.220 23 H -0.215 1.215 24 C -0.003 4.003 25 N -0.035 5.035 26 N -0.189 5.189 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.215 0.785 34 H 0.194 0.806 35 H 0.245 0.755 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -20.046 8.904 11.871 24.941 hybrid contribution -0.337 -0.137 -1.225 1.278 sum -20.383 8.768 10.647 24.611 Atomic orbital electron populations 1.22212 0.75268 1.05005 1.03888 1.46493 1.07058 1.02205 1.75249 1.21777 0.97418 0.83790 1.02195 1.20523 0.90994 0.88943 0.89557 1.22227 1.03810 0.89435 1.04993 1.22359 0.91547 1.01508 0.90252 1.22414 0.94969 0.93604 1.09239 1.17698 0.82173 0.87321 0.76215 1.90724 1.72982 1.28134 1.52539 1.45763 1.06368 1.10919 1.70519 1.22112 0.91017 0.86780 0.96734 0.87031 1.23088 0.93297 1.03180 0.97602 1.20954 0.92053 0.95546 0.85586 1.44715 1.30646 1.57469 1.02005 1.19393 1.09734 1.25529 0.82343 0.90893 1.25560 0.97725 1.00142 1.02077 1.70171 1.17805 1.37619 1.33893 0.85061 0.77414 0.77036 0.80127 1.19531 1.21977 1.21526 1.22075 0.91438 0.94481 0.92336 1.72945 1.31172 0.95018 1.04401 1.73082 1.05639 1.19219 1.20922 0.88870 0.89725 0.90102 0.92937 0.88010 0.92057 0.78485 0.80593 0.75470 0.88323 0.89085 0.96944 0.96739 0.94397 0.95594 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 10.57 127.77 1.35 1.80 16 2 N -0.60 -9.13 3.38 -753.60 -2.54 -11.68 16 3 C 0.09 1.26 10.45 127.77 1.33 2.60 16 4 C 0.34 7.65 7.42 133.20 0.99 8.64 16 5 C -0.17 -3.04 9.33 22.61 0.21 -2.83 16 6 C -0.03 -0.67 9.71 22.73 0.22 -0.45 16 7 C -0.05 -1.60 6.83 42.00 0.29 -1.31 16 8 C 0.58 20.95 7.80 86.79 0.68 21.63 16 9 O -0.57 -21.74 16.13 -3.89 -0.06 -21.81 16 10 N -0.69 -25.51 5.21 -438.81 -2.29 -27.79 16 11 C 0.14 5.11 3.32 46.39 0.15 5.27 16 12 H 0.11 3.68 7.73 -2.39 -0.02 3.66 16 13 C -0.13 -4.79 6.52 31.79 0.21 -4.59 16 14 C 0.18 9.12 5.36 86.73 0.47 9.59 16 15 N -0.62 -33.21 3.39 -691.96 -2.35 -35.56 16 16 C -0.24 -14.18 10.28 84.03 0.86 -13.32 16 17 H 0.07 4.22 7.83 -2.91 -0.02 4.19 16 18 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 19 N -0.95 -57.99 10.31 21.65 0.22 -57.77 16 20 Si 0.97 47.67 29.55 68.60 2.03 49.70 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 C 0.12 5.48 6.93 86.86 0.60 6.08 16 25 N -0.19 -6.51 10.73 -48.50 -0.52 -7.03 16 26 N -0.33 -10.27 10.38 -55.16 -0.57 -10.85 16 27 H 0.09 0.30 5.44 -2.39 -0.01 0.28 16 28 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.10 0.73 8.07 -2.39 -0.02 0.71 16 32 H 0.06 1.12 7.51 -2.39 -0.02 1.10 16 33 H 0.20 1.52 5.96 -2.91 -0.02 1.51 16 34 H 0.18 3.43 7.71 -2.91 -0.02 3.41 16 35 H 0.41 15.79 7.96 -92.71 -0.74 15.05 16 36 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.01 0.68 7.51 -2.39 -0.02 0.67 16 39 H 0.01 0.80 7.38 -2.39 -0.02 0.78 16 40 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -78.29 348.81 2.05 -76.24 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.31 Total: 16.60 kcal Atomic # 6 Polarization: 22.11 SS G_CDS: 7.83 Total: 29.94 kcal Atomic # 7 Polarization: -142.62 SS G_CDS: -8.05 Total: -150.67 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.06 Total: -21.81 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -78.29 2.05 -76.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016007685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.419 kcal (2) G-P(sol) polarization free energy of solvation -78.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds