Wall clock time and date at job start Fri Apr 10 2020 17:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46903 * 109.46985 * 94.65251 * 3 2 1 5 5 C 1.46848 * 110.99476 * 189.99879 * 4 3 2 6 6 C 1.53041 * 109.51891 * 185.83780 * 5 4 3 7 7 C 1.53125 * 109.27804 * 300.81978 * 6 5 4 8 8 C 1.50694 * 109.52400 * 177.55969 * 7 6 5 9 9 O 1.21288 * 119.99942 * 0.13066 * 8 7 6 10 10 N 1.34777 * 120.00262 * 180.12108 * 8 7 6 11 11 C 1.46501 * 120.00191 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.84490 * 23.81014 * 11 10 8 13 13 C 1.53778 * 113.60978 * 155.00408 * 11 10 8 14 14 C 1.53784 * 87.08343 * 89.20504 * 13 11 10 15 15 H 1.09000 * 113.61503 * 270.80175 * 14 13 11 16 16 N 1.46499 * 113.61758 * 139.97754 * 14 13 11 17 17 C 1.36939 * 119.99933 * 156.80548 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.53790 * 87.17067 * 25.38813 * 14 13 11 26 26 C 1.53117 * 109.21082 * 57.62269 * 7 6 5 27 27 C 1.46847 * 110.99711 * 314.20325 * 4 3 2 28 28 H 4.40890 * 5.52100 * 179.97438 * 4 1 2 29 29 H 1.08996 * 109.47366 * 334.64857 * 3 2 1 30 30 H 1.09000 * 109.46648 * 214.64858 * 3 2 1 31 31 H 1.08998 * 109.46290 * 65.82477 * 5 4 3 32 32 H 1.08996 * 109.46320 * 305.84886 * 5 4 3 33 33 H 1.08994 * 109.50296 * 180.88278 * 6 5 4 34 34 H 1.08994 * 109.53815 * 60.77715 * 6 5 4 35 35 H 1.09004 * 109.52113 * 297.69009 * 7 6 5 36 36 H 0.97004 * 119.99525 * 0.02562 * 10 8 7 37 37 H 1.09000 * 113.62078 * 334.65471 * 13 11 10 38 38 H 1.09004 * 113.61222 * 203.74739 * 13 11 10 39 39 H 0.97001 * 119.99790 * 336.52521 * 16 14 13 40 40 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 41 41 H 1.08994 * 113.61490 * 89.16116 * 25 14 13 42 42 H 1.09000 * 113.61241 * 220.06259 * 25 14 13 43 43 H 1.08998 * 109.50746 * 62.32364 * 26 7 6 44 44 H 1.09007 * 109.49986 * 182.43924 * 26 7 6 45 45 H 1.08997 * 109.46810 * 294.18001 * 27 4 3 46 46 H 1.09004 * 109.46148 * 54.15336 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 0.1132 -1.3805 5 6 4.5840 -0.1197 -1.4456 6 6 5.0814 0.1477 -2.8681 7 6 4.3518 -0.7819 -3.8418 8 6 4.7936 -0.4821 -5.2510 9 8 5.6134 0.3876 -5.4574 10 7 4.2780 -1.1804 -6.2820 11 6 4.7071 -0.8886 -7.6520 12 1 5.6908 -0.4212 -7.6968 13 6 4.5452 -2.0770 -8.6144 14 6 3.1255 -1.5561 -8.8938 15 1 2.3722 -1.9562 -8.2152 16 7 2.7315 -1.6521 -10.3015 17 6 1.4052 -1.6900 -10.6403 18 1 0.6498 -1.6537 -9.8693 19 6 1.0318 -1.7751 -11.9745 20 7 1.9526 -1.8198 -12.9140 21 14 -0.7773 -1.8276 -12.4366 22 1 -1.4473 -0.5931 -11.9546 23 1 -0.9087 -1.9185 -13.9129 24 1 -1.4142 -3.0136 -11.8094 25 6 3.6395 -0.1636 -8.4915 26 6 2.8424 -0.5551 -3.7196 27 6 2.4102 -0.8006 -2.2722 28 1 -1.0500 -0.0002 0.0001 29 1 3.0098 -0.9278 0.4400 30 1 3.0089 0.8463 0.5843 31 1 4.7983 -1.1534 -1.1743 32 1 5.0912 0.5505 -0.7516 33 1 6.1538 -0.0404 -2.9199 34 1 4.8804 1.1850 -3.1356 35 1 4.5851 -1.8187 -3.5997 36 1 3.6221 -1.8758 -6.1168 37 1 4.5645 -3.0470 -8.1177 38 1 5.2055 -2.0305 -9.4805 39 1 3.4101 -1.6846 -10.9939 40 1 1.6917 -1.8796 -13.8463 41 1 4.0517 0.4069 -9.3237 42 1 2.9286 0.4088 -7.8955 43 1 2.6046 0.4709 -4.0005 44 1 2.3162 -1.2449 -4.3795 45 1 2.6346 -1.8311 -1.9969 46 1 1.3385 -0.6249 -2.1785 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021092550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:29 Heat of formation + Delta-G solvation = 50.646718 kcal Electronic energy + Delta-G solvation = -24591.119906 eV Core-core repulsion = 21096.915284 eV Total energy + Delta-G solvation = -3494.204622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45303 -39.10539 -37.82462 -34.85289 -34.04260 -32.83811 -32.13370 -31.03374 -29.86024 -27.74603 -25.12601 -24.83655 -23.90839 -23.46824 -22.16245 -21.00003 -19.81535 -18.93226 -18.45617 -17.39470 -17.01325 -16.41771 -15.62829 -15.57215 -15.24209 -15.04071 -14.85971 -14.31223 -14.08797 -13.85456 -13.67903 -13.37632 -13.20027 -13.09057 -12.67061 -12.38038 -12.02157 -11.84316 -11.70208 -11.62182 -11.45323 -11.03613 -10.89844 -10.88585 -10.78211 -10.69112 -10.47688 -10.31093 -10.25170 -9.91284 -9.63130 -9.55456 -8.90959 -8.75155 -8.71477 -6.98742 -5.80382 -3.09449 2.33285 2.49317 2.68926 3.23785 3.41828 3.46441 3.47444 3.65195 3.97279 4.38110 4.50001 4.57013 4.60297 4.87294 4.90662 4.97544 5.04120 5.06704 5.13956 5.22014 5.22811 5.28405 5.40531 5.45660 5.50642 5.52474 5.57381 5.65750 5.77386 5.86570 5.92812 5.94108 6.12635 6.16364 6.24891 6.32913 6.53000 6.60082 6.64288 6.68148 6.71078 7.09290 7.25515 7.63071 7.66198 8.32523 8.38107 9.49178 10.06679 10.41050 11.41911 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.002737 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.714466 B =10228.177819 C =11703.574490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.187 4.187 3 C 0.163 3.837 4 N -0.536 5.536 5 C 0.056 3.944 6 C -0.095 4.095 7 C -0.108 4.108 8 C 0.519 3.481 9 O -0.542 6.542 10 N -0.706 5.706 11 C 0.115 3.885 12 H 0.095 0.905 13 C -0.159 4.159 14 C 0.167 3.833 15 H 0.072 0.928 16 N -0.713 5.713 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.175 4.175 26 C -0.108 4.108 27 C 0.055 3.945 28 H 0.218 0.782 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.399 0.601 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 0.283 26.671 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.187 4.187 3 C 0.036 3.964 4 N -0.261 5.261 5 C -0.071 4.071 6 C -0.133 4.133 7 C -0.130 4.130 8 C 0.305 3.695 9 O -0.419 6.419 10 N -0.356 5.356 11 C 0.009 3.991 12 H 0.113 0.887 13 C -0.198 4.198 14 C 0.055 3.945 15 H 0.090 0.910 16 N -0.351 5.351 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.218 4.218 26 C -0.146 4.146 27 C -0.072 4.072 28 H 0.235 0.765 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.233 0.767 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.054 0.946 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.177 1.356 26.284 26.648 hybrid contribution -1.196 -1.181 -0.253 1.699 sum 2.981 0.175 26.031 26.202 Atomic orbital electron populations 1.24971 0.95972 1.00905 0.99242 1.22790 0.94247 1.00600 1.01110 1.19073 0.84836 1.01739 0.90711 1.62060 1.04323 1.53568 1.06110 1.22155 0.87033 0.99743 0.98177 1.21390 0.99447 1.00721 0.91765 1.21406 0.97245 1.01718 0.92625 1.20519 0.80996 0.81327 0.86655 1.90689 1.33575 1.32002 1.85670 1.45744 1.44820 1.38908 1.06178 1.21852 0.98985 0.98347 0.79870 0.88729 1.23830 1.00688 0.96723 0.98598 1.21611 0.92195 0.92620 0.88083 0.91022 1.42394 1.05289 1.86714 1.00662 1.19240 0.83894 1.42949 0.91574 0.91191 1.24769 0.97580 1.02722 0.95775 1.69651 1.31567 1.57110 0.99672 0.86263 0.84820 0.77864 0.77203 1.21203 1.21662 1.21238 1.24324 0.97917 1.00644 0.98895 1.21601 0.93154 1.03772 0.96113 1.22154 0.99148 0.93705 0.92234 0.76488 0.92473 0.88291 0.94502 0.90021 0.90526 0.89969 0.88920 0.76653 0.91819 0.89075 0.78019 0.93372 0.89651 0.92440 0.90191 0.90598 0.94576 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.47 19.01 29.55 0.56 -0.91 16 2 C -0.19 -1.59 11.51 -37.12 -0.43 -2.02 16 3 C 0.16 1.16 5.77 -6.61 -0.04 1.13 16 4 N -0.54 -4.51 4.79 -238.17 -1.14 -5.65 16 5 C 0.06 0.41 5.42 -3.83 -0.02 0.39 16 6 C -0.10 -0.89 4.68 -26.65 -0.12 -1.02 16 7 C -0.11 -1.04 2.59 -91.65 -0.24 -1.27 16 8 C 0.52 6.84 7.16 -10.99 -0.08 6.76 16 9 O -0.54 -9.26 15.58 5.55 0.09 -9.18 16 10 N -0.71 -8.95 5.17 -52.93 -0.27 -9.22 16 11 C 0.12 1.74 4.33 -67.03 -0.29 1.45 16 12 H 0.09 1.53 7.46 -51.93 -0.39 1.14 16 13 C -0.16 -2.50 7.58 -25.92 -0.20 -2.69 16 14 C 0.17 3.18 4.35 -67.11 -0.29 2.89 16 15 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 16 N -0.71 -17.57 5.41 -52.63 -0.28 -17.86 16 17 C -0.25 -6.73 9.97 -15.06 -0.15 -6.88 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 21 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C -0.18 -3.12 7.69 -25.82 -0.20 -3.31 16 26 C -0.11 -0.98 5.26 -26.65 -0.14 -1.12 16 27 C 0.06 0.47 5.07 -3.83 -0.02 0.45 16 28 H 0.22 1.00 7.80 -54.09 -0.42 0.58 16 29 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.51 8.12 -51.93 -0.42 0.08 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.40 4.19 8.18 -40.82 -0.33 3.86 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 39 H 0.39 10.11 7.91 -40.82 -0.32 9.79 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 0.62 7.65 -51.93 -0.40 0.22 16 45 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.08 0.76 6.36 -51.93 -0.33 0.43 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -32.73 376.02 -9.64 -42.37 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -7.65 Total: 10.56 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -1.75 Total: -6.61 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.98 Total: -59.97 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.73 -9.64 -42.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021092550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.019 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds