Wall clock time and date at job start Fri Apr 10 2020 17:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46903 * 109.46985 * 94.65251 * 3 2 1 5 5 C 1.46848 * 110.99476 * 189.99879 * 4 3 2 6 6 C 1.53041 * 109.51891 * 185.83780 * 5 4 3 7 7 C 1.53125 * 109.27804 * 300.81978 * 6 5 4 8 8 C 1.50694 * 109.52400 * 177.55969 * 7 6 5 9 9 O 1.21288 * 119.99942 * 0.13066 * 8 7 6 10 10 N 1.34777 * 120.00262 * 180.12108 * 8 7 6 11 11 C 1.46501 * 120.00191 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.84490 * 23.81014 * 11 10 8 13 13 C 1.53778 * 113.60978 * 155.00408 * 11 10 8 14 14 C 1.53784 * 87.08343 * 89.20504 * 13 11 10 15 15 H 1.09000 * 113.61503 * 270.80175 * 14 13 11 16 16 N 1.46499 * 113.61758 * 139.97754 * 14 13 11 17 17 C 1.36939 * 119.99933 * 156.80548 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.53790 * 87.17067 * 25.38813 * 14 13 11 26 26 C 1.53117 * 109.21082 * 57.62269 * 7 6 5 27 27 C 1.46847 * 110.99711 * 314.20325 * 4 3 2 28 28 H 4.40890 * 5.52100 * 179.97438 * 4 1 2 29 29 H 1.08996 * 109.47366 * 334.64857 * 3 2 1 30 30 H 1.09000 * 109.46648 * 214.64858 * 3 2 1 31 31 H 1.08998 * 109.46290 * 65.82477 * 5 4 3 32 32 H 1.08996 * 109.46320 * 305.84886 * 5 4 3 33 33 H 1.08994 * 109.50296 * 180.88278 * 6 5 4 34 34 H 1.08994 * 109.53815 * 60.77715 * 6 5 4 35 35 H 1.09004 * 109.52113 * 297.69009 * 7 6 5 36 36 H 0.97004 * 119.99525 * 0.02562 * 10 8 7 37 37 H 1.09000 * 113.62078 * 334.65471 * 13 11 10 38 38 H 1.09004 * 113.61222 * 203.74739 * 13 11 10 39 39 H 0.97001 * 119.99790 * 336.52521 * 16 14 13 40 40 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 41 41 H 1.08994 * 113.61490 * 89.16116 * 25 14 13 42 42 H 1.09000 * 113.61241 * 220.06259 * 25 14 13 43 43 H 1.08998 * 109.50746 * 62.32364 * 26 7 6 44 44 H 1.09007 * 109.49986 * 182.43924 * 26 7 6 45 45 H 1.08997 * 109.46810 * 294.18001 * 27 4 3 46 46 H 1.09004 * 109.46148 * 54.15336 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 0.1132 -1.3805 5 6 4.5840 -0.1197 -1.4456 6 6 5.0814 0.1477 -2.8681 7 6 4.3518 -0.7819 -3.8418 8 6 4.7936 -0.4821 -5.2510 9 8 5.6134 0.3876 -5.4574 10 7 4.2780 -1.1804 -6.2820 11 6 4.7071 -0.8886 -7.6520 12 1 5.6908 -0.4212 -7.6968 13 6 4.5452 -2.0770 -8.6144 14 6 3.1255 -1.5561 -8.8938 15 1 2.3722 -1.9562 -8.2152 16 7 2.7315 -1.6521 -10.3015 17 6 1.4052 -1.6900 -10.6403 18 1 0.6498 -1.6537 -9.8693 19 6 1.0318 -1.7751 -11.9745 20 7 1.9526 -1.8198 -12.9140 21 14 -0.7773 -1.8276 -12.4366 22 1 -1.4473 -0.5931 -11.9546 23 1 -0.9087 -1.9185 -13.9129 24 1 -1.4142 -3.0136 -11.8094 25 6 3.6395 -0.1636 -8.4915 26 6 2.8424 -0.5551 -3.7196 27 6 2.4102 -0.8006 -2.2722 28 1 -1.0500 -0.0002 0.0001 29 1 3.0098 -0.9278 0.4400 30 1 3.0089 0.8463 0.5843 31 1 4.7983 -1.1534 -1.1743 32 1 5.0912 0.5505 -0.7516 33 1 6.1538 -0.0404 -2.9199 34 1 4.8804 1.1850 -3.1356 35 1 4.5851 -1.8187 -3.5997 36 1 3.6221 -1.8758 -6.1168 37 1 4.5645 -3.0470 -8.1177 38 1 5.2055 -2.0305 -9.4805 39 1 3.4101 -1.6846 -10.9939 40 1 1.6917 -1.8796 -13.8463 41 1 4.0517 0.4069 -9.3237 42 1 2.9286 0.4088 -7.8955 43 1 2.6046 0.4709 -4.0005 44 1 2.3162 -1.2449 -4.3795 45 1 2.6346 -1.8311 -1.9969 46 1 1.3385 -0.6249 -2.1785 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021092550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:28 Heat of formation + Delta-G solvation = 28.033742 kcal Electronic energy + Delta-G solvation = -24592.100479 eV Core-core repulsion = 21096.915284 eV Total energy + Delta-G solvation = -3495.185194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.48314 -40.08443 -38.99757 -35.76687 -35.56831 -34.12544 -33.01005 -31.80483 -31.61796 -28.42937 -26.59163 -26.40765 -24.98783 -24.16456 -23.64914 -21.96074 -20.61808 -20.36006 -19.16170 -18.98514 -18.23971 -17.34219 -16.79038 -16.60966 -16.23146 -15.96067 -15.82253 -15.71344 -15.46741 -15.05014 -14.71166 -14.44318 -14.16848 -13.91294 -13.74484 -13.48198 -13.38502 -13.31811 -12.99985 -12.77366 -12.58066 -12.45180 -12.21111 -12.16567 -11.84297 -11.75465 -11.71979 -11.56441 -11.29461 -11.19577 -11.05839 -10.83391 -10.71791 -10.00028 -9.27190 -8.98690 -7.94438 -5.23011 1.47991 1.50721 1.56719 1.62785 1.75945 1.92486 2.17694 2.56985 3.08262 3.36958 3.46782 3.58731 3.70948 3.77408 3.81101 3.90521 3.96568 4.21442 4.24322 4.32720 4.33061 4.38531 4.42757 4.54698 4.59390 4.70721 4.72576 4.77246 4.88599 4.90954 4.92492 4.95493 5.10526 5.12739 5.13706 5.18827 5.21377 5.27051 5.38449 5.50992 5.72547 6.03107 6.11017 6.27517 6.59427 6.70236 7.28109 7.33698 8.10455 8.32785 9.28685 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.002737 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.714466 B =10228.177819 C =11703.574490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.215 4.215 3 C 0.162 3.838 4 N -0.553 5.553 5 C 0.062 3.938 6 C -0.093 4.093 7 C -0.098 4.098 8 C 0.517 3.483 9 O -0.584 6.584 10 N -0.697 5.697 11 C 0.134 3.866 12 H 0.087 0.913 13 C -0.141 4.141 14 C 0.155 3.845 15 H 0.083 0.917 16 N -0.728 5.728 17 C -0.244 4.244 18 H 0.078 0.922 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.972 3.028 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.275 1.275 25 C -0.174 4.174 26 C -0.104 4.104 27 C 0.060 3.940 28 H 0.240 0.760 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.121 0.879 36 H 0.413 0.587 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.050 0.950 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 -0.981 29.070 29.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.215 4.215 3 C 0.036 3.964 4 N -0.278 5.278 5 C -0.065 4.065 6 C -0.132 4.132 7 C -0.119 4.119 8 C 0.305 3.695 9 O -0.464 6.464 10 N -0.348 5.348 11 C 0.027 3.973 12 H 0.105 0.895 13 C -0.180 4.180 14 C 0.045 3.955 15 H 0.101 0.899 16 N -0.365 5.365 17 C -0.376 4.376 18 H 0.096 0.904 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.801 3.199 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.201 1.201 25 C -0.216 4.216 26 C -0.142 4.142 27 C -0.068 4.068 28 H 0.256 0.744 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.139 0.861 36 H 0.250 0.750 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.502 0.076 28.761 28.973 hybrid contribution -0.973 -0.727 -0.914 1.521 sum 2.528 -0.652 27.846 27.969 Atomic orbital electron populations 1.25681 0.96890 1.00333 0.98491 1.23304 0.95147 1.01248 1.01836 1.19157 0.84267 1.02864 0.90081 1.62023 1.04849 1.54033 1.06931 1.22119 0.86511 1.01072 0.96782 1.21350 0.99534 0.99089 0.93185 1.21415 0.97390 1.03253 0.89886 1.21201 0.80022 0.80288 0.87943 1.90677 1.35528 1.33794 1.86395 1.45648 1.44969 1.39175 1.05030 1.21513 0.97654 0.97216 0.80906 0.89464 1.23640 0.97787 0.98036 0.98584 1.21949 0.94275 0.93750 0.85553 0.89907 1.42595 1.04195 1.87071 1.02646 1.19668 0.85335 1.40833 0.91800 0.90377 1.25579 1.01588 1.03764 0.95978 1.69812 1.33412 1.59294 0.99568 0.85231 0.80151 0.78205 0.76300 1.20617 1.22405 1.20055 1.24183 0.98716 0.99785 0.98904 1.21565 0.92817 1.02638 0.97177 1.22076 0.98717 0.94433 0.91547 0.74356 0.90987 0.87465 0.92763 0.88858 0.90609 0.92696 0.86075 0.74980 0.89343 0.89630 0.79422 0.94058 0.91479 0.92804 0.92600 0.89391 0.93207 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.70 19.01 74.32 1.41 -1.28 16 2 C -0.22 -3.33 11.51 31.13 0.36 -2.97 16 3 C 0.16 1.99 5.77 84.50 0.49 2.48 16 4 N -0.55 -8.26 4.79 -907.45 -4.35 -12.61 16 5 C 0.06 0.77 5.42 86.33 0.47 1.24 16 6 C -0.09 -1.63 4.68 30.65 0.14 -1.49 16 7 C -0.10 -1.67 2.59 -11.46 -0.03 -1.70 16 8 C 0.52 12.96 7.16 87.66 0.63 13.58 16 9 O -0.58 -19.82 15.58 -3.05 -0.05 -19.87 16 10 N -0.70 -16.31 5.17 -439.76 -2.27 -18.58 16 11 C 0.13 3.90 4.33 45.58 0.20 4.09 16 12 H 0.09 2.77 7.46 -2.39 -0.02 2.75 16 13 C -0.14 -4.21 7.58 31.12 0.24 -3.97 16 14 C 0.15 5.74 4.35 45.52 0.20 5.93 16 15 H 0.08 2.89 8.11 -2.39 -0.02 2.87 16 16 N -0.73 -35.93 5.41 -320.43 -1.73 -37.67 16 17 C -0.24 -13.34 9.97 84.03 0.84 -12.50 16 18 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 19 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 20 N -0.97 -59.23 13.06 21.65 0.28 -58.95 16 21 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 25 C -0.17 -6.13 7.69 31.18 0.24 -5.89 16 26 C -0.10 -1.70 5.26 30.65 0.16 -1.54 16 27 C 0.06 0.88 5.07 86.33 0.44 1.32 16 28 H 0.24 1.74 7.80 -4.42 -0.03 1.71 16 29 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 0.94 8.12 -2.39 -0.02 0.92 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.26 8.04 -2.39 -0.02 1.24 16 35 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.41 7.45 8.18 -92.71 -0.76 6.69 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.09 2.70 8.11 -2.38 -0.02 2.68 16 39 H 0.37 19.95 7.91 -92.71 -0.73 19.22 16 40 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.21 7.65 -2.38 -0.02 1.19 16 45 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 46 H 0.08 1.25 6.36 -2.39 -0.02 1.23 16 Total: -1.00 -71.27 376.02 -0.37 -71.64 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.52 Total: 34.96 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 6.24 Total: -6.63 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -8.07 Total: -127.81 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.05 Total: -19.87 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -71.27 -0.37 -71.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021092550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.675 kcal (2) G-P(sol) polarization free energy of solvation -71.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds