Wall clock time and date at job start Fri Apr 10 2020 17:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28519 * 124.44464 * 2 1 4 4 C 1.31133 * 109.06246 * 179.88516 * 3 2 1 5 5 C 1.40927 * 105.77435 * 0.35667 * 4 3 2 6 6 C 1.47801 * 127.23796 * 179.78351 * 5 4 3 7 7 O 1.21550 * 120.00127 * 0.02651 * 6 5 4 8 8 N 1.34777 * 119.99883 * 180.02562 * 6 5 4 9 9 C 1.47564 * 125.67640 * 359.69031 * 8 6 5 10 10 C 1.55434 * 104.88258 * 156.03417 * 9 8 6 11 11 C 1.53661 * 101.31037 * 35.82604 * 10 9 8 12 12 C 1.53656 * 111.40838 * 87.06346 * 11 10 9 13 13 C 1.55190 * 101.41536 * 155.02448 * 12 11 10 14 14 N 1.47553 * 105.00783 * 324.51143 * 13 12 11 15 15 C 1.36940 * 125.67531 * 203.82508 * 14 13 12 16 16 H 1.07994 * 120.00025 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99570 * 0.04378 * 15 14 13 18 18 N 1.31614 * 120.00411 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99789 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47336 * 59.99763 * 19 17 15 21 21 H 1.48506 * 109.47338 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47117 * 299.99683 * 19 17 15 23 23 C 1.47406 * 108.65226 * 23.85898 * 14 13 12 24 24 C 1.47405 * 125.67303 * 180.02562 * 8 6 5 25 25 N 1.28592 * 124.44391 * 180.29493 * 2 1 3 26 26 H 1.09002 * 109.47391 * 269.70242 * 1 2 3 27 27 H 1.09001 * 109.46813 * 149.70298 * 1 2 3 28 28 H 1.09004 * 109.47041 * 29.70425 * 1 2 3 29 29 H 1.08001 * 127.11634 * 180.13689 * 4 3 2 30 30 H 1.08995 * 110.33752 * 275.02745 * 9 8 6 31 31 H 1.09007 * 110.32920 * 37.25888 * 9 8 6 32 32 H 1.09008 * 111.25389 * 277.76029 * 10 9 8 33 33 H 1.08999 * 110.95286 * 153.77226 * 10 9 8 34 34 H 1.09002 * 111.04163 * 273.05826 * 12 11 10 35 35 H 1.09000 * 111.04041 * 36.99719 * 12 11 10 36 36 H 1.08997 * 110.33246 * 205.62471 * 13 12 11 37 37 H 1.09007 * 110.41833 * 83.43542 * 13 12 11 38 38 H 0.96998 * 120.00159 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.98377 * 238.53554 * 23 14 13 40 40 H 1.09002 * 109.98450 * 117.23022 * 23 14 13 41 41 H 1.08994 * 109.98709 * 301.45422 * 24 8 6 42 42 H 1.09002 * 109.98585 * 62.72031 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4563 0.7120 0.0025 5 6 3.4659 -0.6972 -0.0043 6 6 4.6487 -1.5835 -0.0092 7 8 5.7663 -1.1055 -0.0069 8 7 4.4881 -2.9216 -0.0161 9 6 3.1953 -3.6332 -0.0131 10 6 3.5041 -5.0247 -0.6331 11 6 4.9131 -5.2941 -0.0824 12 6 4.8566 -5.9647 1.2989 13 6 6.2226 -6.7003 1.3393 14 7 6.4586 -7.1444 -0.0478 15 6 7.2591 -8.1888 -0.4268 16 1 7.3667 -8.4348 -1.4728 17 6 7.9318 -8.9316 0.5338 18 7 7.8007 -8.6317 1.8086 19 14 9.0231 -10.3568 0.0170 20 1 10.1031 -9.8567 -0.8711 21 1 9.6241 -10.9825 1.2223 22 1 8.2103 -11.3641 -0.7110 23 6 5.6900 -6.2762 -0.9580 24 6 5.5745 -3.9178 -0.0210 25 7 2.1923 -1.0605 -0.0055 26 1 -0.3634 -0.0053 1.0276 27 1 -0.3633 -0.8873 -0.5185 28 1 -0.3633 0.8927 -0.5093 29 1 4.3131 1.3695 0.0052 30 1 2.8260 -3.7434 1.0064 31 1 2.4678 -3.0995 -0.6248 32 1 3.5119 -4.9790 -1.7222 33 1 2.7961 -5.7745 -0.2802 34 1 4.7893 -5.2208 2.0927 35 1 4.0295 -6.6723 1.3569 36 1 6.1706 -7.5591 2.0084 37 1 7.0118 -6.0195 1.6585 38 1 8.2705 -9.1510 2.4798 39 1 4.9982 -6.8760 -1.5493 40 1 6.3684 -5.7327 -1.6157 41 1 6.2105 -3.7712 -0.8939 42 1 6.1662 -3.8282 0.8901 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041740360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:57 Heat of formation + Delta-G solvation = 96.891062 kcal Electronic energy + Delta-G solvation = -25216.908099 eV Core-core repulsion = 21621.168439 eV Total energy + Delta-G solvation = -3595.739660 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.71085 -41.47790 -39.70827 -37.24289 -34.87225 -34.51272 -33.71227 -32.11510 -30.68127 -29.92785 -28.99442 -27.44589 -26.04922 -24.38470 -23.71495 -22.91289 -22.18160 -20.79942 -20.22232 -18.88523 -18.28007 -18.05997 -17.91551 -16.95615 -16.83629 -16.64113 -15.97307 -15.74600 -15.59548 -15.16927 -14.61852 -14.19632 -14.00297 -13.81395 -13.69568 -13.57852 -13.45493 -13.18309 -13.02810 -12.88825 -12.82909 -12.68181 -12.50531 -12.05234 -11.98532 -11.78532 -11.57975 -11.54280 -11.45238 -11.33297 -11.11115 -10.70808 -10.50037 -9.76084 -8.86372 -7.75073 -5.19081 0.17313 0.85292 1.23130 1.47572 1.50883 1.57048 1.83536 2.08594 2.51514 2.80345 3.31274 3.44524 3.55116 3.64976 3.74752 3.80173 3.95310 4.23829 4.31221 4.32356 4.35163 4.41017 4.48437 4.62022 4.66762 4.69500 4.74005 4.78974 4.86826 4.93153 4.99513 5.04058 5.07264 5.22550 5.30020 5.35656 5.48873 5.56423 5.65210 5.84458 6.32860 6.34212 6.84200 7.06758 7.12872 7.80348 8.44647 9.26803 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.037152 B = 0.002958 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.478870 B = 9462.817704 C = 9772.423739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.133 5.133 3 N -0.297 5.297 4 C 0.030 3.970 5 C -0.062 4.062 6 C 0.615 3.385 7 O -0.569 6.569 8 N -0.601 5.601 9 C 0.109 3.891 10 C -0.106 4.106 11 C -0.071 4.071 12 C -0.111 4.111 13 C 0.155 3.845 14 N -0.626 5.626 15 C -0.238 4.238 16 H 0.081 0.919 17 C -0.068 4.068 18 N -0.950 5.950 19 Si 0.980 3.020 20 H -0.282 1.282 21 H -0.295 1.295 22 H -0.274 1.274 23 C 0.148 3.852 24 C 0.134 3.866 25 N -0.242 5.242 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.220 0.780 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.072 0.928 37 H -0.021 1.021 38 H 0.246 0.754 39 H 0.044 0.956 40 H 0.018 0.982 41 H 0.060 0.940 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.413 16.390 -3.907 26.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.038 5.038 3 N -0.137 5.137 4 C -0.153 4.153 5 C -0.223 4.223 6 C 0.402 3.598 7 O -0.447 6.447 8 N -0.333 5.333 9 C -0.013 4.013 10 C -0.144 4.144 11 C -0.072 4.072 12 C -0.150 4.150 13 C 0.030 3.970 14 N -0.352 5.352 15 C -0.367 4.367 16 H 0.099 0.901 17 C -0.261 4.261 18 N -0.600 5.600 19 Si 0.808 3.192 20 H -0.208 1.208 21 H -0.221 1.221 22 H -0.200 1.200 23 C 0.023 3.977 24 C 0.012 3.988 25 N -0.093 5.093 26 H 0.131 0.869 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.236 0.764 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.090 0.910 37 H -0.004 1.004 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.063 16.568 -3.835 27.071 hybrid contribution 2.260 -0.736 0.074 2.378 sum -18.802 15.832 -3.761 24.866 Atomic orbital electron populations 1.22833 0.66642 1.08238 1.07285 1.48733 1.10770 0.98603 1.45675 1.74032 1.03599 1.15965 1.20126 1.25091 0.95083 0.93299 1.01789 1.22656 0.91058 0.94833 1.13716 1.16561 0.86322 0.80398 0.76542 1.90795 1.25604 1.75337 1.53004 1.48521 1.10008 1.04035 1.70760 1.22741 0.84216 0.91949 1.02373 1.22736 0.94010 0.96392 1.01308 1.21383 0.96630 0.92211 0.96986 1.22723 0.98370 0.98799 0.95070 1.21765 0.91583 0.96541 0.87135 1.44929 1.53612 1.33906 1.02782 1.19427 1.19264 1.05075 0.92913 0.90083 1.25621 1.02385 1.02562 0.95487 1.70053 1.47251 1.42700 0.99970 0.85135 0.78542 0.79088 0.76454 1.20784 1.22078 1.19972 1.21270 0.93066 0.91037 0.92359 1.21684 0.89320 0.86563 1.01228 1.74423 1.02478 1.15798 1.16579 0.86894 0.85567 0.85699 0.76352 0.90208 0.87778 0.89498 0.87392 0.90812 0.90098 0.90990 1.00351 0.94418 0.93794 0.96360 0.92183 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 11.55 127.77 1.48 1.83 16 2 N -0.13 -2.14 4.35 -206.53 -0.90 -3.04 16 3 N -0.30 -5.79 12.01 -56.16 -0.67 -6.47 16 4 C 0.03 0.65 12.04 85.46 1.03 1.68 16 5 C -0.06 -1.57 7.02 42.24 0.30 -1.27 16 6 C 0.61 19.26 7.86 86.77 0.68 19.94 16 7 O -0.57 -21.70 17.28 -3.87 -0.07 -21.77 16 8 N -0.60 -17.62 3.34 -815.80 -2.73 -20.35 16 9 C 0.11 2.38 6.13 87.01 0.53 2.91 16 10 C -0.11 -2.42 5.94 31.65 0.19 -2.23 16 11 C -0.07 -2.30 0.61 -51.87 -0.03 -2.33 16 12 C -0.11 -3.97 5.85 31.57 0.18 -3.79 16 13 C 0.15 7.68 5.85 86.93 0.51 8.19 16 14 N -0.63 -32.31 3.41 -693.07 -2.36 -34.68 16 15 C -0.24 -13.43 10.28 84.03 0.86 -12.56 16 16 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 17 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 18 N -0.95 -57.33 10.09 21.65 0.22 -57.11 16 19 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 C 0.15 5.95 6.51 86.14 0.56 6.51 16 24 C 0.13 4.60 6.02 86.14 0.52 5.12 16 25 N -0.24 -4.94 9.31 -48.16 -0.45 -5.39 16 26 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.13 0.06 8.14 -2.39 -0.02 0.05 16 28 H 0.12 0.08 8.14 -2.38 -0.02 0.06 16 29 H 0.22 3.96 8.06 -2.91 -0.02 3.93 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.10 1.98 6.23 -2.38 -0.01 1.96 16 32 H 0.09 1.83 8.09 -2.38 -0.02 1.81 16 33 H 0.11 2.07 7.78 -2.39 -0.02 2.05 16 34 H 0.07 2.42 7.94 -2.39 -0.02 2.40 16 35 H 0.08 2.66 7.82 -2.39 -0.02 2.65 16 36 H 0.07 4.07 5.89 -2.39 -0.01 4.05 16 37 H -0.02 -1.18 8.14 -2.38 -0.02 -1.20 16 38 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.04 1.66 7.86 -2.39 -0.02 1.64 16 40 H 0.02 0.76 7.41 -2.39 -0.02 0.75 16 41 H 0.06 2.20 7.44 -2.39 -0.02 2.18 16 42 H 0.05 2.04 7.78 -2.39 -0.02 2.02 16 Total: -1.00 -76.41 340.96 3.38 -73.04 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 1.03 Total: 7.04 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 7.28 Total: 20.56 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -6.89 Total: -127.03 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.07 Total: -21.77 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -76.41 3.38 -73.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041740360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.930 kcal (2) G-P(sol) polarization free energy of solvation -76.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds