Wall clock time and date at job start Fri Apr 10 2020 17:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34590 * 125.75016 * 2 1 4 4 N 1.30869 * 107.62401 * 179.73126 * 3 2 1 5 5 C 1.34541 * 107.27052 * 0.36755 * 4 3 2 6 6 C 1.47875 * 126.04821 * 179.89925 * 5 4 3 7 7 O 1.21555 * 119.99857 * 184.92690 * 6 5 4 8 8 N 1.34778 * 119.99789 * 4.92336 * 6 5 4 9 9 C 1.47152 * 121.21502 * 354.44071 * 8 6 5 10 10 C 1.52836 * 108.02155 * 122.67219 * 9 8 6 11 11 C 1.53207 * 110.51165 * 57.32471 * 10 9 8 12 12 H 1.09003 * 113.03832 * 71.03980 * 11 10 9 13 13 C 1.56031 * 106.38588 * 195.44465 * 11 10 9 14 14 C 1.54503 * 102.61051 * 78.41205 * 13 11 10 15 15 N 1.47437 * 107.14853 * 22.84571 * 14 13 11 16 16 C 1.36935 * 126.05617 * 181.60828 * 15 14 13 17 17 H 1.08003 * 120.00034 * 180.02562 * 16 15 14 18 18 C 1.38814 * 120.00212 * 0.02562 * 16 15 14 19 19 N 1.31619 * 119.99731 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99968 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47023 * 90.00131 * 20 18 16 22 22 H 1.48499 * 109.47044 * 210.00294 * 20 18 16 23 23 H 1.48500 * 109.46799 * 330.00250 * 20 18 16 24 24 C 1.46464 * 107.88131 * 1.62144 * 15 14 13 25 25 H 1.08998 * 108.42158 * 89.24083 * 24 15 14 26 26 C 1.46756 * 121.21393 * 174.42166 * 8 6 5 27 27 N 1.28850 * 125.74899 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47189 * 270.01729 * 1 2 3 29 29 H 1.08995 * 109.46878 * 30.01794 * 1 2 3 30 30 H 1.09006 * 109.46821 * 150.02032 * 1 2 3 31 31 H 1.07998 * 126.18392 * 359.96744 * 3 2 1 32 32 H 1.09004 * 109.76376 * 242.32194 * 9 8 6 33 33 H 1.09003 * 109.76080 * 3.02615 * 9 8 6 34 34 H 1.08996 * 109.25602 * 177.65828 * 10 9 8 35 35 H 1.08996 * 109.25362 * 297.09677 * 10 9 8 36 36 H 1.08999 * 110.78203 * 320.12926 * 13 11 10 37 37 H 1.08999 * 110.78081 * 196.69455 * 13 11 10 38 38 H 1.08997 * 109.90074 * 263.46016 * 14 13 11 39 39 H 1.09004 * 109.89735 * 142.22457 * 14 13 11 40 40 H 0.97006 * 119.99619 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.22805 * 352.85936 * 26 8 6 42 42 H 1.09001 * 109.22444 * 112.25255 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4951 0.6852 0.0059 5 6 3.4750 -0.6601 0.0012 6 6 4.6575 -1.5480 0.0030 7 8 4.5141 -2.7513 -0.0921 8 7 5.8942 -1.0231 0.1100 9 6 6.1077 0.4329 0.1047 10 6 6.8349 0.8088 1.3954 11 6 8.1543 0.0390 1.5119 12 1 8.9099 0.3778 0.8031 13 6 8.6129 0.1738 2.9973 14 6 7.7198 -0.8585 3.7210 15 7 7.2888 -1.8436 2.7122 16 6 6.4586 -2.9104 2.9306 17 1 6.2062 -3.5738 2.1166 18 6 5.9413 -3.1392 4.1983 19 7 6.2485 -2.3304 5.1902 20 14 4.8093 -4.5950 4.4964 21 1 5.6174 -5.7792 4.8834 22 1 3.8578 -4.2667 5.5882 23 1 4.0529 -4.8962 3.2545 24 6 7.9064 -1.4790 1.4351 25 1 8.8757 -1.9729 1.3678 26 6 7.0770 -1.8826 0.2363 27 7 2.2178 -1.0457 0.0005 28 1 -0.3633 0.0003 1.0276 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5136 31 1 1.9164 2.1190 -0.0005 32 1 6.7155 0.7132 -0.7557 33 1 5.1471 0.9461 0.0600 34 1 7.0406 1.8791 1.3934 35 1 6.2011 0.5667 2.2485 36 1 8.4222 1.1798 3.3711 37 1 9.6664 -0.0855 3.1018 38 1 6.8497 -0.3609 4.1492 39 1 8.2893 -1.3562 4.5060 40 1 5.8873 -2.4906 6.0762 41 1 6.7574 -2.9181 0.3531 42 1 7.6832 -1.7937 -0.6652 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042050003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:03 Heat of formation + Delta-G solvation = 87.441948 kcal Electronic energy + Delta-G solvation = -26694.351065 eV Core-core repulsion = 23098.201660 eV Total energy + Delta-G solvation = -3596.149405 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.45709 -41.26534 -39.52667 -36.65436 -35.49470 -34.65843 -32.81738 -32.77715 -31.00496 -30.04396 -28.63839 -26.54815 -26.03321 -24.27419 -23.82304 -23.09194 -21.73310 -21.30365 -19.90849 -18.63046 -18.44320 -17.73379 -17.56414 -17.15562 -16.74962 -16.22328 -15.96166 -15.73333 -15.51623 -15.24703 -14.49848 -14.35937 -14.30883 -13.94021 -13.92883 -13.67318 -13.25411 -13.17255 -12.97631 -12.75253 -12.67207 -12.46373 -12.31356 -12.08821 -11.70030 -11.60501 -11.45956 -11.36882 -11.33761 -11.17717 -10.69327 -10.56173 -10.37528 -9.50930 -8.81220 -7.86061 -5.15454 0.35783 1.14392 1.31528 1.32933 1.35237 1.45709 2.01289 2.38266 2.45278 3.06662 3.31952 3.45523 3.57824 3.87254 3.92635 4.04985 4.14842 4.32094 4.38062 4.40327 4.48676 4.55751 4.65744 4.67481 4.70032 4.75080 4.80720 4.92569 5.04442 5.09175 5.17114 5.19795 5.33580 5.46964 5.51072 5.62588 5.68942 5.74941 5.81673 6.03454 6.22151 6.42599 6.92985 7.13706 7.19714 7.81987 8.45314 9.24603 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.006781 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.528007 B = 4127.971897 C = 5381.586691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.302 5.302 3 C 0.208 3.792 4 N -0.497 5.497 5 C 0.132 3.868 6 C 0.602 3.398 7 O -0.577 6.577 8 N -0.571 5.571 9 C 0.063 3.937 10 C -0.109 4.109 11 C -0.087 4.087 12 H 0.125 0.875 13 C -0.128 4.128 14 C 0.187 3.813 15 N -0.606 5.606 16 C -0.204 4.204 17 H 0.064 0.936 18 C -0.065 4.065 19 N -0.948 5.948 20 Si 0.952 3.048 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.141 3.859 25 H 0.034 0.966 26 C 0.116 3.884 27 N -0.295 5.295 28 H 0.099 0.901 29 H 0.152 0.848 30 H 0.094 0.906 31 H 0.289 0.711 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.099 0.901 35 H 0.025 0.975 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.004 0.996 39 H 0.000 1.000 40 H 0.243 0.757 41 H 0.053 0.947 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.373 16.291 -13.755 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.097 5.097 3 C -0.085 4.085 4 N -0.224 5.224 5 C -0.147 4.147 6 C 0.387 3.613 7 O -0.454 6.454 8 N -0.302 5.302 9 C -0.058 4.058 10 C -0.147 4.147 11 C -0.106 4.106 12 H 0.142 0.858 13 C -0.166 4.166 14 C 0.062 3.938 15 N -0.331 5.331 16 C -0.334 4.334 17 H 0.082 0.918 18 C -0.258 4.258 19 N -0.599 5.599 20 Si 0.783 3.217 21 H -0.206 1.206 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.035 3.965 25 H 0.052 0.948 26 C -0.007 4.007 27 N -0.136 5.136 28 H 0.118 0.882 29 H 0.170 0.830 30 H 0.113 0.887 31 H 0.304 0.696 32 H 0.109 0.891 33 H 0.170 0.830 34 H 0.117 0.883 35 H 0.044 0.956 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.022 0.978 39 H 0.018 0.982 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.501 15.071 -13.632 21.661 hybrid contribution -0.902 -1.399 1.048 1.967 sum -8.403 13.671 -12.584 20.393 Atomic orbital electron populations 1.22765 0.69121 1.08092 1.06393 1.47763 1.10888 1.02935 1.48142 1.27757 0.84731 0.97692 0.98321 1.70605 1.21646 1.07626 1.22518 1.23394 0.91691 0.90354 1.09292 1.16752 0.82247 0.85455 0.76894 1.90734 1.85995 1.16187 1.52517 1.47655 1.04134 1.09406 1.69016 1.23152 1.06734 0.78040 0.97908 1.21707 0.95440 1.00476 0.97084 1.22516 0.97904 0.93322 0.96902 0.85761 1.23030 0.98960 0.98912 0.95746 1.20963 0.94124 0.88575 0.90107 1.44478 1.54526 1.28831 1.05246 1.19086 1.18694 1.01857 0.93762 0.91824 1.25312 1.02759 1.01473 0.96222 1.70152 1.49821 1.39586 1.00322 0.85437 0.79185 0.80507 0.76615 1.20639 1.21641 1.21698 1.21038 0.94079 0.95712 0.85719 0.94821 1.21415 0.86086 0.94582 0.98648 1.74266 1.03280 1.16038 1.20001 0.88206 0.82982 0.88727 0.69628 0.89136 0.83022 0.88299 0.95570 0.90024 0.91097 0.97789 0.98186 0.94807 0.92864 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 11.38 127.77 1.45 2.10 16 2 N -0.30 -6.63 3.72 -373.46 -1.39 -8.01 16 3 C 0.21 3.76 12.62 180.30 2.27 6.04 16 4 N -0.50 -14.40 7.74 -193.03 -1.49 -15.90 16 5 C 0.13 5.13 7.74 137.13 1.06 6.19 16 6 C 0.60 27.78 7.72 86.80 0.67 28.45 16 7 O -0.58 -31.51 16.57 -3.89 -0.06 -31.58 16 8 N -0.57 -22.83 2.97 -826.47 -2.45 -25.29 16 9 C 0.06 1.91 6.34 86.20 0.55 2.46 16 10 C -0.11 -3.46 5.05 30.61 0.15 -3.30 16 11 C -0.09 -2.79 3.68 -9.34 -0.03 -2.82 16 12 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 13 C -0.13 -4.60 6.33 32.16 0.20 -4.39 16 14 C 0.19 9.58 4.61 86.71 0.40 9.98 16 15 N -0.61 -32.46 3.20 -674.11 -2.16 -34.61 16 16 C -0.20 -12.56 9.70 84.03 0.81 -11.75 16 17 H 0.06 4.08 6.51 -2.91 -0.02 4.06 16 18 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 19 N -0.95 -61.12 10.38 21.65 0.22 -60.89 16 20 Si 0.95 52.41 29.55 68.60 2.03 54.44 16 21 H -0.28 -14.76 7.11 99.48 0.71 -14.06 16 22 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 23 H -0.29 -16.51 7.11 99.48 0.71 -15.80 16 24 C 0.14 5.86 2.97 44.77 0.13 5.99 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 C 0.12 4.67 5.67 85.76 0.49 5.16 16 27 N -0.30 -10.69 12.09 -52.44 -0.63 -11.33 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.15 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.29 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.15 4.56 3.70 -51.82 -0.19 4.37 16 34 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.03 1.10 6.86 -2.39 -0.02 1.08 16 36 H 0.08 2.57 7.97 -2.39 -0.02 2.55 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.00 0.23 7.04 -2.39 -0.02 0.21 16 39 H 0.00 -0.01 7.57 -2.39 -0.02 -0.02 16 40 H 0.24 15.27 8.31 -92.70 -0.77 14.50 16 41 H 0.05 2.59 5.57 -2.39 -0.01 2.58 16 42 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -95.27 331.68 3.55 -91.72 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: 0.86 Total: 0.98 kcal Atomic # 6 Polarization: 31.84 SS G_CDS: 8.63 Total: 40.47 kcal Atomic # 7 Polarization: -148.13 SS G_CDS: -7.90 Total: -156.03 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.06 Total: -31.58 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 2.03 Total: 54.44 kcal Total: -95.27 3.55 -91.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042050003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.166 kcal (2) G-P(sol) polarization free energy of solvation -95.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds