Wall clock time and date at job start Fri Apr 10 2020 17:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34587 * 125.74127 * 2 1 4 4 N 1.30876 * 107.61893 * 179.97438 * 3 2 1 5 5 C 1.34547 * 107.27054 * 0.02562 * 4 3 2 6 6 C 1.47874 * 126.04800 * 180.02562 * 5 4 3 7 7 O 1.21554 * 119.99743 * 187.66642 * 6 5 4 8 8 N 1.34772 * 119.99970 * 7.66021 * 6 5 4 9 9 C 1.46596 * 119.75108 * 176.99732 * 8 6 5 10 10 C 1.53879 * 110.71559 * 227.76235 * 9 8 6 11 11 C 1.51984 * 107.28865 * 308.19842 * 10 9 8 12 12 H 1.09004 * 111.00981 * 303.48444 * 11 10 9 13 13 C 1.54211 * 114.95969 * 175.44664 * 11 10 9 14 14 C 1.55299 * 101.58027 * 206.50476 * 13 11 10 15 15 N 1.48152 * 107.21196 * 22.50938 * 14 13 11 16 16 C 1.36943 * 126.39828 * 184.87915 * 15 14 13 17 17 H 1.08003 * 119.99677 * 180.02562 * 16 15 14 18 18 C 1.38808 * 119.99593 * 0.02562 * 16 15 14 19 19 N 1.31615 * 120.00592 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99683 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47178 * 90.00154 * 20 18 16 22 22 H 1.48503 * 109.46892 * 209.99962 * 20 18 16 23 23 H 1.48500 * 109.47193 * 329.99983 * 20 18 16 24 24 C 1.45508 * 107.20864 * 4.89594 * 15 14 13 25 25 H 1.09001 * 109.57198 * 85.87142 * 24 15 14 26 26 C 1.47802 * 119.74972 * 357.03044 * 8 6 5 27 27 N 1.28849 * 125.74949 * 180.30817 * 2 1 3 28 28 H 1.09003 * 109.46927 * 90.00543 * 1 2 3 29 29 H 1.08998 * 109.47197 * 210.00115 * 1 2 3 30 30 H 1.09000 * 109.47827 * 330.00499 * 1 2 3 31 31 H 1.07993 * 126.19061 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.23002 * 348.08744 * 9 8 6 33 33 H 1.08998 * 109.22218 * 107.48493 * 9 8 6 34 34 H 1.09002 * 109.89341 * 67.63718 * 10 9 8 35 35 H 1.09002 * 109.89736 * 188.67443 * 10 9 8 36 36 H 1.08995 * 111.11019 * 88.43590 * 13 11 10 37 37 H 1.09003 * 111.03167 * 324.53855 * 13 11 10 38 38 H 1.08994 * 109.92247 * 263.05810 * 14 13 11 39 39 H 1.08999 * 109.92262 * 141.95333 * 14 13 11 40 40 H 0.97000 * 120.00426 * 180.02562 * 19 18 16 41 41 H 1.08994 * 110.06452 * 9.50110 * 26 8 6 42 42 H 1.08996 * 110.06058 * 247.93474 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0924 0.0000 4 7 3.4950 0.6853 0.0006 5 6 3.4750 -0.6600 0.0003 6 6 4.6575 -1.5479 0.0013 7 8 4.5172 -2.7471 -0.1394 8 7 5.8908 -1.0275 0.1581 9 6 7.0532 -1.9182 0.2244 10 6 7.9578 -1.5451 1.4120 11 6 8.2472 -0.0566 1.3091 12 1 8.6957 0.1887 0.3463 13 6 9.0569 0.5316 2.4824 14 6 8.5964 2.0146 2.4665 15 7 7.2824 2.0584 1.7837 16 6 6.5656 3.1828 1.4719 17 1 5.6130 3.0943 0.9708 18 6 7.0635 4.4363 1.8000 19 7 8.2247 4.5442 2.4102 20 14 6.0855 5.9702 1.3753 21 1 5.1808 6.3085 2.5032 22 1 7.0179 7.1003 1.1326 23 1 5.2805 5.7213 0.1525 24 6 6.8952 0.6834 1.5065 25 1 6.3876 0.2647 2.3755 26 6 6.0610 0.4370 0.2627 27 7 2.2178 -1.0457 -0.0056 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3635 0.8900 0.5137 31 1 1.9162 2.1191 0.0004 32 1 6.7113 -2.9464 0.3427 33 1 7.6232 -1.8338 -0.7008 34 1 7.4457 -1.7592 2.3501 35 1 8.8889 -2.1095 1.3608 36 1 10.1283 0.4540 2.2979 37 1 8.7888 0.0501 3.4229 38 1 9.3187 2.6219 1.9211 39 1 8.4969 2.3836 3.4873 40 1 8.5724 5.4202 2.6398 41 1 5.0891 0.9202 0.3625 42 1 6.5802 0.8168 -0.6171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042050005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:06 Heat of formation + Delta-G solvation = 114.628723 kcal Electronic energy + Delta-G solvation = -26094.729327 eV Core-core repulsion = 22499.758829 eV Total energy + Delta-G solvation = -3594.970497 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.46731 -39.90292 -38.07812 -35.17979 -34.72124 -32.87356 -31.75955 -31.28598 -29.25696 -28.54942 -27.74977 -24.99763 -24.15006 -23.00199 -22.62206 -21.48899 -20.09734 -19.74683 -19.15038 -17.45558 -16.84119 -16.69662 -16.32320 -15.84478 -14.94828 -14.87178 -14.67441 -14.18868 -14.03373 -13.60191 -13.55168 -13.31911 -13.08104 -13.06246 -12.58563 -12.07724 -11.84269 -11.71427 -11.43870 -11.20542 -10.83171 -10.77976 -10.66283 -10.49534 -10.41762 -10.11971 -10.02093 -9.80935 -9.68015 -9.56786 -9.52685 -8.86972 -8.56153 -8.31504 -6.77220 -5.64839 -2.97466 1.42333 2.10729 2.14127 3.09217 3.41870 3.46170 3.49192 3.51853 4.11945 4.23084 4.54020 4.66656 4.71308 4.91176 5.00058 5.13036 5.24309 5.30353 5.51925 5.70951 5.75365 5.79374 5.91281 5.96064 6.06675 6.15605 6.20624 6.27055 6.28758 6.32640 6.35933 6.58701 6.66325 6.75811 6.79959 7.17799 7.25042 7.56165 7.65220 7.68932 7.88861 7.98988 8.30509 8.37178 9.26618 9.89820 10.58006 11.47960 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.006206 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.180592 B = 4510.793517 C = 6736.849329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.308 5.308 3 C 0.193 3.807 4 N -0.466 5.466 5 C 0.152 3.848 6 C 0.612 3.388 7 O -0.536 6.536 8 N -0.582 5.582 9 C 0.114 3.886 10 C -0.118 4.118 11 C -0.116 4.116 12 H 0.076 0.924 13 C -0.138 4.138 14 C 0.177 3.823 15 N -0.591 5.591 16 C -0.218 4.218 17 H 0.083 0.917 18 C -0.011 4.011 19 N -0.924 5.924 20 Si 0.908 3.092 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.159 3.841 25 H 0.020 0.980 26 C 0.065 3.935 27 N -0.258 5.258 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.227 0.773 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.250 0.750 41 H 0.156 0.844 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.948 -8.408 -4.284 14.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.103 5.103 3 C -0.101 4.101 4 N -0.191 5.191 5 C -0.128 4.128 6 C 0.396 3.604 7 O -0.412 6.412 8 N -0.315 5.315 9 C -0.008 4.008 10 C -0.157 4.157 11 C -0.136 4.136 12 H 0.095 0.905 13 C -0.176 4.176 14 C 0.053 3.947 15 N -0.316 5.316 16 C -0.347 4.347 17 H 0.101 0.899 18 C -0.207 4.207 19 N -0.572 5.572 20 Si 0.739 3.261 21 H -0.219 1.219 22 H -0.219 1.219 23 H -0.206 1.206 24 C 0.050 3.950 25 H 0.037 0.963 26 C -0.057 4.057 27 N -0.097 5.097 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.244 0.756 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.172 0.828 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.906 -9.264 -4.348 14.956 hybrid contribution -0.639 1.371 -0.118 1.517 sum -11.545 -7.893 -4.466 14.681 Atomic orbital electron populations 1.22223 0.72480 1.05903 1.04816 1.47388 1.09178 1.03916 1.49863 1.26820 0.86123 0.96041 1.01161 1.71080 1.18765 1.09075 1.20175 1.23743 0.92031 0.89486 1.07554 1.16376 0.81106 0.85437 0.77522 1.90767 1.85400 1.14137 1.50850 1.48043 1.04811 1.09113 1.69494 1.21629 0.86178 0.94294 0.98733 1.21804 0.98825 0.97039 0.98012 1.22414 0.98539 0.93321 0.99320 0.90523 1.22804 0.98471 0.99480 0.96840 1.21525 0.86923 0.89333 0.96949 1.44159 1.20172 0.99271 1.67951 1.19098 1.00644 0.83171 1.31753 0.89925 1.24778 0.97297 0.97378 1.01202 1.69944 1.18851 1.22242 1.46158 0.86170 0.78864 0.83209 0.77865 1.21871 1.21889 1.20618 1.20949 0.92611 0.87225 0.94200 0.96291 1.23174 1.07134 0.76602 0.98786 1.74295 1.02749 1.13254 1.19370 0.89276 0.88330 0.87958 0.75645 0.89419 0.91641 0.91546 0.90836 0.92305 0.92640 0.92705 0.94570 0.93920 0.82769 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 11.38 59.85 0.68 1.12 16 2 N -0.31 -3.46 3.72 -69.39 -0.26 -3.72 16 3 C 0.19 2.27 12.62 -90.47 -1.14 1.13 16 4 N -0.47 -7.65 7.65 -12.36 -0.09 -7.75 16 5 C 0.15 2.67 7.70 -156.35 -1.20 1.46 16 6 C 0.61 11.54 7.68 -12.32 -0.09 11.45 16 7 O -0.54 -10.98 16.44 5.32 0.09 -10.89 16 8 N -0.58 -10.39 3.01 -173.85 -0.52 -10.92 16 9 C 0.11 1.75 6.32 -3.53 -0.02 1.73 16 10 C -0.12 -1.77 5.73 -26.79 -0.15 -1.92 16 11 C -0.12 -2.11 2.63 -89.24 -0.23 -2.34 16 12 H 0.08 1.43 8.13 -51.93 -0.42 1.00 16 13 C -0.14 -2.61 6.58 -24.88 -0.16 -2.78 16 14 C 0.18 4.30 5.44 -1.91 -0.01 4.29 16 15 N -0.59 -14.89 3.35 -162.90 -0.55 -15.43 16 16 C -0.22 -5.91 9.88 -15.06 -0.15 -6.05 16 17 H 0.08 2.15 7.41 -52.48 -0.39 1.76 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -26.92 10.43 55.49 0.58 -26.34 16 20 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.16 3.37 2.77 -67.82 -0.19 3.18 16 25 H 0.02 0.45 7.90 -51.93 -0.41 0.04 16 26 C 0.07 1.27 5.50 -3.95 -0.02 1.24 16 27 N -0.26 -4.06 12.09 32.07 0.39 -3.67 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.23 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.09 1.33 6.98 -51.93 -0.36 0.96 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.03 7.97 -51.93 -0.41 0.62 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 38 H 0.05 1.47 7.21 -51.93 -0.37 1.09 16 39 H 0.04 0.97 7.76 -51.93 -0.40 0.56 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.16 3.11 3.43 -82.13 -0.28 2.83 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -35.41 335.54 -9.13 -44.54 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.00 Total: 0.40 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -2.80 Total: 12.12 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -0.45 Total: -67.83 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.41 -9.13 -44.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042050005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.164 kcal (2) G-P(sol) polarization free energy of solvation -35.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds