Wall clock time and date at job start Fri Apr 10 2020 17:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34587 * 125.74127 * 2 1 4 4 N 1.30876 * 107.61893 * 179.97438 * 3 2 1 5 5 C 1.34547 * 107.27054 * 0.02562 * 4 3 2 6 6 C 1.47874 * 126.04800 * 180.02562 * 5 4 3 7 7 O 1.21554 * 119.99743 * 187.66642 * 6 5 4 8 8 N 1.34772 * 119.99970 * 7.66021 * 6 5 4 9 9 C 1.46596 * 119.75108 * 176.99732 * 8 6 5 10 10 C 1.53879 * 110.71559 * 227.76235 * 9 8 6 11 11 C 1.51984 * 107.28865 * 308.19842 * 10 9 8 12 12 H 1.09004 * 111.00981 * 303.48444 * 11 10 9 13 13 C 1.54211 * 114.95969 * 175.44664 * 11 10 9 14 14 C 1.55299 * 101.58027 * 206.50476 * 13 11 10 15 15 N 1.48152 * 107.21196 * 22.50938 * 14 13 11 16 16 C 1.36943 * 126.39828 * 184.87915 * 15 14 13 17 17 H 1.08003 * 119.99677 * 180.02562 * 16 15 14 18 18 C 1.38808 * 119.99593 * 0.02562 * 16 15 14 19 19 N 1.31615 * 120.00592 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99683 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47178 * 90.00154 * 20 18 16 22 22 H 1.48503 * 109.46892 * 209.99962 * 20 18 16 23 23 H 1.48500 * 109.47193 * 329.99983 * 20 18 16 24 24 C 1.45508 * 107.20864 * 4.89594 * 15 14 13 25 25 H 1.09001 * 109.57198 * 85.87142 * 24 15 14 26 26 C 1.47802 * 119.74972 * 357.03044 * 8 6 5 27 27 N 1.28849 * 125.74949 * 180.30817 * 2 1 3 28 28 H 1.09003 * 109.46927 * 90.00543 * 1 2 3 29 29 H 1.08998 * 109.47197 * 210.00115 * 1 2 3 30 30 H 1.09000 * 109.47827 * 330.00499 * 1 2 3 31 31 H 1.07993 * 126.19061 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.23002 * 348.08744 * 9 8 6 33 33 H 1.08998 * 109.22218 * 107.48493 * 9 8 6 34 34 H 1.09002 * 109.89341 * 67.63718 * 10 9 8 35 35 H 1.09002 * 109.89736 * 188.67443 * 10 9 8 36 36 H 1.08995 * 111.11019 * 88.43590 * 13 11 10 37 37 H 1.09003 * 111.03167 * 324.53855 * 13 11 10 38 38 H 1.08994 * 109.92247 * 263.05810 * 14 13 11 39 39 H 1.08999 * 109.92262 * 141.95333 * 14 13 11 40 40 H 0.97000 * 120.00426 * 180.02562 * 19 18 16 41 41 H 1.08994 * 110.06452 * 9.50110 * 26 8 6 42 42 H 1.08996 * 110.06058 * 247.93474 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0924 0.0000 4 7 3.4950 0.6853 0.0006 5 6 3.4750 -0.6600 0.0003 6 6 4.6575 -1.5479 0.0013 7 8 4.5172 -2.7471 -0.1394 8 7 5.8908 -1.0275 0.1581 9 6 7.0532 -1.9182 0.2244 10 6 7.9578 -1.5451 1.4120 11 6 8.2472 -0.0566 1.3091 12 1 8.6957 0.1887 0.3463 13 6 9.0569 0.5316 2.4824 14 6 8.5964 2.0146 2.4665 15 7 7.2824 2.0584 1.7837 16 6 6.5656 3.1828 1.4719 17 1 5.6130 3.0943 0.9708 18 6 7.0635 4.4363 1.8000 19 7 8.2247 4.5442 2.4102 20 14 6.0855 5.9702 1.3753 21 1 5.1808 6.3085 2.5032 22 1 7.0179 7.1003 1.1326 23 1 5.2805 5.7213 0.1525 24 6 6.8952 0.6834 1.5065 25 1 6.3876 0.2647 2.3755 26 6 6.0610 0.4370 0.2627 27 7 2.2178 -1.0457 -0.0056 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3635 0.8900 0.5137 31 1 1.9162 2.1191 0.0004 32 1 6.7113 -2.9464 0.3427 33 1 7.6232 -1.8338 -0.7008 34 1 7.4457 -1.7592 2.3501 35 1 8.8889 -2.1095 1.3608 36 1 10.1283 0.4540 2.2979 37 1 8.7888 0.0501 3.4229 38 1 9.3187 2.6219 1.9211 39 1 8.4969 2.3836 3.4873 40 1 8.5724 5.4202 2.6398 41 1 5.0891 0.9202 0.3625 42 1 6.5802 0.8168 -0.6171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042050005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:06 Heat of formation + Delta-G solvation = 91.932307 kcal Electronic energy + Delta-G solvation = -26095.713517 eV Core-core repulsion = 22499.758829 eV Total energy + Delta-G solvation = -3595.954688 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.50164 -41.35364 -39.65468 -36.75394 -35.72857 -34.56690 -32.96158 -32.80666 -30.88087 -30.16928 -28.70878 -26.55628 -25.79765 -24.42594 -23.71849 -22.70740 -21.71533 -21.38645 -20.51119 -18.61331 -18.53975 -17.83594 -17.55207 -17.11070 -16.71501 -16.29472 -15.95296 -15.69272 -15.63142 -15.09963 -14.78669 -14.59484 -14.16646 -13.98283 -13.75938 -13.70324 -13.43841 -13.08851 -13.03469 -12.75170 -12.64838 -12.46027 -12.10492 -11.98860 -11.84327 -11.57174 -11.49965 -11.46968 -11.39951 -11.26368 -10.64368 -10.58364 -10.26252 -9.73617 -8.82131 -7.74739 -5.09778 0.26431 1.06974 1.29583 1.51166 1.53859 1.62563 1.88645 2.19950 2.57919 2.93896 3.36804 3.44278 3.59671 3.76713 3.91605 3.97605 4.05766 4.28721 4.33967 4.38319 4.41235 4.43376 4.54473 4.66890 4.69105 4.72287 4.81000 4.88357 4.95971 5.06669 5.13600 5.15552 5.19973 5.40878 5.48863 5.57250 5.61764 5.71315 5.83749 5.94486 6.15604 6.28368 6.79775 7.09454 7.17334 7.86643 8.54997 9.37223 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.006206 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.180592 B = 4510.793517 C = 6736.849329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.295 5.295 3 C 0.203 3.797 4 N -0.505 5.505 5 C 0.119 3.881 6 C 0.607 3.393 7 O -0.561 6.561 8 N -0.581 5.581 9 C 0.108 3.892 10 C -0.106 4.106 11 C -0.104 4.104 12 H 0.075 0.925 13 C -0.122 4.122 14 C 0.182 3.818 15 N -0.609 5.609 16 C -0.223 4.223 17 H 0.090 0.910 18 C -0.072 4.072 19 N -0.957 5.957 20 Si 0.974 3.026 21 H -0.289 1.289 22 H -0.301 1.301 23 H -0.260 1.260 24 C 0.154 3.846 25 H 0.002 0.998 26 C 0.076 3.924 27 N -0.275 5.275 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.140 0.860 31 H 0.273 0.727 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.022 0.978 39 H -0.001 1.001 40 H 0.243 0.757 41 H 0.155 0.845 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.667 -8.780 -5.096 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.091 5.091 3 C -0.090 4.090 4 N -0.231 5.231 5 C -0.160 4.160 6 C 0.392 3.608 7 O -0.439 6.439 8 N -0.313 5.313 9 C -0.013 4.013 10 C -0.144 4.144 11 C -0.123 4.123 12 H 0.093 0.907 13 C -0.161 4.161 14 C 0.057 3.943 15 N -0.333 5.333 16 C -0.352 4.352 17 H 0.108 0.892 18 C -0.264 4.264 19 N -0.607 5.607 20 Si 0.803 3.197 21 H -0.216 1.216 22 H -0.229 1.229 23 H -0.185 1.185 24 C 0.046 3.954 25 H 0.020 0.980 26 C -0.046 4.046 27 N -0.116 5.116 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.158 0.842 31 H 0.289 0.711 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.018 0.982 40 H 0.052 0.948 41 H 0.171 0.829 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.664 -9.670 -5.174 16.753 hybrid contribution -0.265 1.493 0.145 1.524 sum -12.929 -8.176 -5.030 16.103 Atomic orbital electron populations 1.22798 0.68852 1.07945 1.06861 1.47823 1.10917 1.02746 1.47572 1.27576 0.84907 0.97653 0.98878 1.70847 1.21652 1.08697 1.21922 1.23524 0.92216 0.89999 1.10225 1.16637 0.81752 0.85439 0.76946 1.90730 1.85872 1.15092 1.52200 1.48064 1.05463 1.08587 1.69194 1.21841 0.85647 0.94071 0.99742 1.21753 1.00325 0.94727 0.97591 1.22341 0.96076 0.95164 0.98761 0.90659 1.22684 1.00005 0.95448 0.97919 1.21323 0.86293 0.92510 0.94185 1.44430 1.20378 1.00563 1.67978 1.19479 1.00955 0.84019 1.30734 0.89204 1.25630 0.98490 1.00447 1.01807 1.70180 1.20574 1.22182 1.47733 0.85126 0.77413 0.78931 0.78261 1.21576 1.22851 1.18458 1.21032 0.94704 0.85493 0.94220 0.98032 1.22941 1.06749 0.77769 0.97189 1.74207 1.02611 1.15311 1.19497 0.87168 0.88120 0.84183 0.71130 0.88939 0.89973 0.91997 0.87143 0.89791 0.91467 0.95922 0.98230 0.94782 0.82894 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 11.38 127.77 1.45 1.94 16 2 N -0.30 -5.94 3.72 -373.46 -1.39 -7.33 16 3 C 0.20 4.29 12.62 180.30 2.27 6.57 16 4 N -0.51 -16.19 7.65 -193.03 -1.48 -17.67 16 5 C 0.12 4.17 7.70 137.13 1.06 5.22 16 6 C 0.61 23.02 7.68 86.80 0.67 23.69 16 7 O -0.56 -23.12 16.44 -3.88 -0.06 -23.18 16 8 N -0.58 -20.58 3.01 -822.20 -2.47 -23.05 16 9 C 0.11 3.15 6.32 86.66 0.55 3.70 16 10 C -0.11 -2.91 5.73 30.56 0.17 -2.74 16 11 C -0.10 -3.63 2.63 -9.90 -0.03 -3.66 16 12 H 0.08 2.69 8.13 -2.39 -0.02 2.67 16 13 C -0.12 -4.53 6.58 31.79 0.21 -4.33 16 14 C 0.18 9.11 5.44 86.85 0.47 9.58 16 15 N -0.61 -31.35 3.35 -669.31 -2.24 -33.59 16 16 C -0.22 -12.23 9.88 84.03 0.83 -11.40 16 17 H 0.09 4.67 7.41 -2.91 -0.02 4.65 16 18 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 19 N -0.96 -57.71 10.43 21.65 0.23 -57.49 16 20 Si 0.97 44.77 29.55 68.60 2.03 46.80 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 C 0.15 6.53 2.77 45.60 0.13 6.66 16 25 H 0.00 0.10 7.90 -2.39 -0.02 0.08 16 26 C 0.08 2.97 5.50 85.73 0.47 3.44 16 27 N -0.27 -8.44 12.09 -52.43 -0.63 -9.07 16 28 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.14 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.27 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.09 2.66 6.98 -2.39 -0.02 2.64 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 1.79 7.97 -2.39 -0.02 1.78 16 35 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.07 2.34 8.13 -2.39 -0.02 2.32 16 38 H 0.02 1.26 7.21 -2.39 -0.02 1.24 16 39 H 0.00 -0.03 7.76 -2.39 -0.02 -0.05 16 40 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.16 6.21 3.43 -62.02 -0.21 5.99 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -81.22 335.54 3.52 -77.70 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.83 Total: 11.78 kcal Atomic # 6 Polarization: 26.38 SS G_CDS: 8.72 Total: 35.10 kcal Atomic # 7 Polarization: -140.21 SS G_CDS: -7.99 Total: -148.20 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.06 Total: -23.18 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -81.22 3.52 -77.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042050005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.630 kcal (2) G-P(sol) polarization free energy of solvation -81.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds