Wall clock time and date at job start Fri Apr 10 2020 17:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00049 * 2 1 4 4 O 1.21281 * 119.99818 * 184.34264 * 3 2 1 5 5 C 1.50696 * 119.99818 * 4.34781 * 3 2 1 6 6 H 1.09000 * 109.68980 * 332.11628 * 5 3 2 7 7 C 1.53436 * 109.72892 * 92.68780 * 5 3 2 8 8 C 1.53236 * 109.55308 * 169.48072 * 7 5 3 9 9 C 1.53423 * 109.51800 * 289.92815 * 8 7 5 10 10 C 1.50604 * 108.36294 * 49.83293 * 9 8 7 11 11 N 1.32906 * 129.16337 * 163.40937 * 10 9 8 12 12 N 1.29023 * 108.63702 * 180.12619 * 11 10 9 13 13 N 1.29106 * 110.25398 * 359.97438 * 12 11 10 14 14 H 0.97007 * 126.00551 * 179.97438 * 13 12 11 15 15 C 1.34389 * 107.99129 * 359.94220 * 13 12 11 16 16 C 1.46504 * 120.00036 * 180.02562 * 2 1 3 17 17 C 1.53949 * 113.74066 * 36.66912 * 16 2 1 18 18 N 1.47576 * 86.11563 * 222.04878 * 17 16 2 19 19 C 1.36942 * 134.48762 * 204.64195 * 18 17 16 20 20 H 1.08007 * 119.99668 * 180.02562 * 19 18 17 21 21 C 1.38807 * 120.00337 * 0.02562 * 19 18 17 22 22 N 1.31622 * 120.00017 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00141 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46803 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47112 * 120.00023 * 23 21 19 26 26 H 1.48491 * 109.47105 * 239.99909 * 23 21 19 27 27 C 1.47575 * 91.01889 * 24.64109 * 18 17 16 28 28 H 1.08998 * 109.47332 * 84.95640 * 1 2 3 29 29 H 1.09007 * 109.47050 * 204.95816 * 1 2 3 30 30 H 1.08998 * 109.47191 * 324.95276 * 1 2 3 31 31 H 1.08997 * 109.45408 * 289.47882 * 7 5 3 32 32 H 1.08997 * 109.45873 * 49.42064 * 7 5 3 33 33 H 1.09003 * 109.49562 * 169.91650 * 8 7 5 34 34 H 1.08999 * 109.47942 * 49.93813 * 8 7 5 35 35 H 1.09000 * 109.69316 * 290.11058 * 9 8 7 36 36 H 1.08990 * 109.69748 * 169.55777 * 9 8 7 37 37 H 1.08996 * 112.94780 * 168.40445 * 16 2 1 38 38 H 1.09004 * 113.77102 * 336.35384 * 17 16 2 39 39 H 1.09002 * 113.76251 * 107.74555 * 17 16 2 40 40 H 0.96998 * 120.00000 * 179.97438 * 22 21 19 41 41 H 1.08992 * 113.77341 * 221.05566 * 27 18 17 42 42 H 1.09002 * 113.76492 * 89.65532 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3491 1.1686 -0.0795 5 6 1.3886 2.4703 0.0989 6 1 0.3898 2.3519 -0.3211 7 6 1.2840 2.8975 1.5689 8 6 0.7598 4.3351 1.6492 9 6 1.8359 5.3024 1.1390 10 6 2.3327 4.8006 -0.1913 11 7 3.0243 5.4442 -1.1260 12 7 3.2385 4.6370 -2.1095 13 7 2.7158 3.4826 -1.8623 14 1 2.7408 2.7085 -2.4463 15 6 2.1317 3.5418 -0.6534 16 6 2.1975 -1.2688 -0.0006 17 6 1.5285 -2.3703 -0.8426 18 7 1.8681 -3.2839 0.2655 19 6 2.0737 -4.6340 0.3674 20 1 2.3181 -5.0723 1.3238 21 6 1.9679 -5.4391 -0.7583 22 7 1.6694 -4.9051 -1.9237 23 14 2.2476 -7.2809 -0.6191 24 1 2.5653 -7.6281 0.7893 25 1 1.0195 -8.0013 -1.0410 26 1 3.3795 -7.6772 -1.4947 27 6 1.8973 -2.1584 1.2195 28 1 -0.3634 0.0903 -1.0237 29 1 -0.3633 -0.9318 0.4337 30 1 -0.3633 0.8413 0.5901 31 1 0.5982 2.2315 2.0926 32 1 2.2684 2.8429 2.0338 33 1 0.5163 4.5763 2.6839 34 1 -0.1351 4.4306 1.0342 35 1 2.6621 5.3403 1.8489 36 1 1.4083 6.2978 1.0194 37 1 3.2615 -1.1451 -0.2023 38 1 0.4569 -2.2274 -0.9815 39 1 2.0533 -2.5925 -1.7718 40 1 1.5959 -5.4677 -2.7104 41 1 2.7163 -2.2114 1.9367 42 1 0.9339 -1.9532 1.6863 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043675108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:32 Heat of formation + Delta-G solvation = 115.318505 kcal Electronic energy + Delta-G solvation = -25436.796472 eV Core-core repulsion = 21841.855886 eV Total energy + Delta-G solvation = -3594.940586 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.57945 -40.22491 -38.07086 -36.85929 -34.68543 -33.87788 -32.12009 -30.69661 -30.32644 -27.83676 -26.86363 -25.12942 -24.94518 -23.56431 -22.98222 -22.69813 -20.39918 -19.71568 -18.73032 -18.02606 -17.59815 -16.90414 -16.25238 -15.74051 -15.58511 -15.06224 -14.79618 -14.41584 -14.09869 -14.04393 -13.81850 -13.72967 -13.09122 -12.63950 -12.56268 -12.19782 -11.95491 -11.84640 -11.66947 -11.60528 -11.55332 -11.43548 -11.33018 -10.98203 -10.84150 -10.78086 -10.46412 -10.39949 -10.13845 -9.71121 -9.66269 -9.00998 -8.91592 -8.36166 -7.02951 -5.89411 -3.22675 1.43938 2.39405 2.46821 2.63279 3.03238 3.32539 3.38217 3.40474 3.96815 4.26016 4.30475 4.39048 4.48745 4.61699 4.80486 4.91334 5.02454 5.05700 5.11399 5.16782 5.28811 5.36954 5.38739 5.51491 5.55510 5.58761 5.69322 5.73503 5.77958 5.92194 5.93570 6.00120 6.06789 6.28922 6.43783 6.57302 6.72083 7.05384 7.17027 7.39031 7.52230 7.84788 8.14377 8.35432 8.92027 9.58092 10.43178 11.27763 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.003151 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.136785 B = 8884.108943 C = 9351.194694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.593 5.593 3 C 0.509 3.491 4 O -0.537 6.537 5 C -0.037 4.037 6 H 0.113 0.887 7 C -0.105 4.105 8 C -0.116 4.116 9 C -0.034 4.034 10 C -0.015 4.015 11 N -0.262 5.262 12 N -0.087 5.087 13 N -0.368 5.368 14 H 0.449 0.551 15 C 0.012 3.988 16 C 0.087 3.913 17 C 0.157 3.843 18 N -0.605 5.605 19 C -0.225 4.225 20 H 0.083 0.917 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.915 3.085 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.109 3.891 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.255 0.745 41 H 0.048 0.952 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 17.764 5.809 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.325 5.325 3 C 0.295 3.705 4 O -0.414 6.414 5 C -0.060 4.060 6 H 0.130 0.870 7 C -0.143 4.143 8 C -0.154 4.154 9 C -0.073 4.073 10 C -0.155 4.155 11 N -0.128 5.128 12 N -0.066 5.066 13 N -0.086 5.086 14 H 0.295 0.705 15 C -0.125 4.125 16 C -0.016 4.016 17 C 0.031 3.969 18 N -0.331 5.331 19 C -0.352 4.352 20 H 0.101 0.899 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.745 3.255 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.216 1.216 27 C -0.018 4.018 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.961 18.370 4.668 19.592 hybrid contribution -0.603 -2.388 0.202 2.471 sum -5.564 15.982 4.870 17.610 Atomic orbital electron populations 1.21904 0.79698 1.03694 1.01954 1.48093 1.07042 1.06099 1.71285 1.20374 0.88006 0.84931 0.77204 1.90739 1.13843 1.87177 1.49612 1.20069 0.98849 0.89579 0.97538 0.86965 1.21584 1.03607 0.97313 0.91813 1.21666 0.98143 0.93347 1.02285 1.19984 0.98445 0.99252 0.89630 1.21630 1.03436 0.91261 0.99203 1.74795 1.14346 1.24742 0.98889 1.78555 1.18171 0.89070 1.20823 1.44650 1.36073 1.13243 1.14671 0.70488 1.21215 1.04242 0.98105 0.88888 1.24149 0.98085 0.79626 0.99719 1.22635 0.96574 0.83554 0.94158 1.45646 1.81073 1.02135 1.04293 1.19042 1.41120 0.80064 0.94965 0.89920 1.24809 1.01664 0.98382 0.95405 1.69813 1.53942 1.34226 0.98718 0.86007 0.77465 0.84570 0.77475 1.20354 1.21645 1.21563 1.22973 0.98192 0.87165 0.93497 0.92266 0.89621 0.91441 0.89689 0.90183 0.89916 0.91026 0.89737 0.89608 0.86635 0.94972 0.90489 0.93539 0.93427 0.94601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 8.50 59.85 0.51 1.23 16 2 N -0.59 -8.22 3.09 -175.74 -0.54 -8.76 16 3 C 0.51 6.96 6.67 -10.99 -0.07 6.89 16 4 O -0.54 -9.57 15.81 5.56 0.09 -9.48 16 5 C -0.04 -0.36 2.08 -92.78 -0.19 -0.55 16 6 H 0.11 0.82 6.44 -51.93 -0.33 0.49 16 7 C -0.10 -0.82 5.16 -26.38 -0.14 -0.96 16 8 C -0.12 -0.70 5.91 -26.39 -0.16 -0.86 16 9 C -0.03 -0.28 6.30 -27.71 -0.17 -0.45 16 10 C -0.01 -0.18 7.11 -83.12 -0.59 -0.77 16 11 N -0.26 -3.88 12.40 33.17 0.41 -3.47 16 12 N -0.09 -1.29 13.40 60.35 0.81 -0.48 16 13 N -0.37 -4.66 6.83 33.39 0.23 -4.43 16 14 H 0.45 4.81 8.96 -190.07 -1.70 3.10 16 15 C 0.01 0.15 5.95 -82.50 -0.49 -0.34 16 16 C 0.09 1.60 4.41 -70.14 -0.31 1.29 16 17 C 0.16 3.44 6.90 -2.98 -0.02 3.42 16 18 N -0.60 -14.82 3.70 -178.10 -0.66 -15.48 16 19 C -0.22 -6.10 10.70 -15.06 -0.16 -6.26 16 20 H 0.08 2.18 7.83 -52.48 -0.41 1.76 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -26.37 11.38 55.49 0.63 -25.74 16 23 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.11 2.11 8.44 -2.98 -0.03 2.08 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.00 6.17 -51.92 -0.32 0.68 16 30 H 0.07 0.46 6.09 -51.93 -0.32 0.15 16 31 H 0.08 0.53 7.68 -51.93 -0.40 0.13 16 32 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.12 2.36 7.22 -51.93 -0.38 1.98 16 38 H 0.03 0.68 6.60 -51.93 -0.34 0.34 16 39 H 0.08 1.93 7.15 -51.93 -0.37 1.56 16 40 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.04 0.64 7.05 -51.93 -0.37 0.27 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -34.23 337.52 -7.92 -42.15 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.03 Total: -0.41 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.92 Total: 4.46 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.88 Total: -58.35 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.23 -7.92 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043675108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.473 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds