Wall clock time and date at job start Fri Apr 10 2020 17:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00049 * 2 1 4 4 O 1.21281 * 119.99818 * 184.34264 * 3 2 1 5 5 C 1.50696 * 119.99818 * 4.34781 * 3 2 1 6 6 H 1.09000 * 109.68980 * 332.11628 * 5 3 2 7 7 C 1.53436 * 109.72892 * 92.68780 * 5 3 2 8 8 C 1.53236 * 109.55308 * 169.48072 * 7 5 3 9 9 C 1.53423 * 109.51800 * 289.92815 * 8 7 5 10 10 C 1.50604 * 108.36294 * 49.83293 * 9 8 7 11 11 N 1.32906 * 129.16337 * 163.40937 * 10 9 8 12 12 N 1.29023 * 108.63702 * 180.12619 * 11 10 9 13 13 N 1.29106 * 110.25398 * 359.97438 * 12 11 10 14 14 H 0.97007 * 126.00551 * 179.97438 * 13 12 11 15 15 C 1.34389 * 107.99129 * 359.94220 * 13 12 11 16 16 C 1.46504 * 120.00036 * 180.02562 * 2 1 3 17 17 C 1.53949 * 113.74066 * 36.66912 * 16 2 1 18 18 N 1.47576 * 86.11563 * 222.04878 * 17 16 2 19 19 C 1.36942 * 134.48762 * 204.64195 * 18 17 16 20 20 H 1.08007 * 119.99668 * 180.02562 * 19 18 17 21 21 C 1.38807 * 120.00337 * 0.02562 * 19 18 17 22 22 N 1.31622 * 120.00017 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00141 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46803 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47112 * 120.00023 * 23 21 19 26 26 H 1.48491 * 109.47105 * 239.99909 * 23 21 19 27 27 C 1.47575 * 91.01889 * 24.64109 * 18 17 16 28 28 H 1.08998 * 109.47332 * 84.95640 * 1 2 3 29 29 H 1.09007 * 109.47050 * 204.95816 * 1 2 3 30 30 H 1.08998 * 109.47191 * 324.95276 * 1 2 3 31 31 H 1.08997 * 109.45408 * 289.47882 * 7 5 3 32 32 H 1.08997 * 109.45873 * 49.42064 * 7 5 3 33 33 H 1.09003 * 109.49562 * 169.91650 * 8 7 5 34 34 H 1.08999 * 109.47942 * 49.93813 * 8 7 5 35 35 H 1.09000 * 109.69316 * 290.11058 * 9 8 7 36 36 H 1.08990 * 109.69748 * 169.55777 * 9 8 7 37 37 H 1.08996 * 112.94780 * 168.40445 * 16 2 1 38 38 H 1.09004 * 113.77102 * 336.35384 * 17 16 2 39 39 H 1.09002 * 113.76251 * 107.74555 * 17 16 2 40 40 H 0.96998 * 120.00000 * 179.97438 * 22 21 19 41 41 H 1.08992 * 113.77341 * 221.05566 * 27 18 17 42 42 H 1.09002 * 113.76492 * 89.65532 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3491 1.1686 -0.0795 5 6 1.3886 2.4703 0.0989 6 1 0.3898 2.3519 -0.3211 7 6 1.2840 2.8975 1.5689 8 6 0.7598 4.3351 1.6492 9 6 1.8359 5.3024 1.1390 10 6 2.3327 4.8006 -0.1913 11 7 3.0243 5.4442 -1.1260 12 7 3.2385 4.6370 -2.1095 13 7 2.7158 3.4826 -1.8623 14 1 2.7408 2.7085 -2.4463 15 6 2.1317 3.5418 -0.6534 16 6 2.1975 -1.2688 -0.0006 17 6 1.5285 -2.3703 -0.8426 18 7 1.8681 -3.2839 0.2655 19 6 2.0737 -4.6340 0.3674 20 1 2.3181 -5.0723 1.3238 21 6 1.9679 -5.4391 -0.7583 22 7 1.6694 -4.9051 -1.9237 23 14 2.2476 -7.2809 -0.6191 24 1 2.5653 -7.6281 0.7893 25 1 1.0195 -8.0013 -1.0410 26 1 3.3795 -7.6772 -1.4947 27 6 1.8973 -2.1584 1.2195 28 1 -0.3634 0.0903 -1.0237 29 1 -0.3633 -0.9318 0.4337 30 1 -0.3633 0.8413 0.5901 31 1 0.5982 2.2315 2.0926 32 1 2.2684 2.8429 2.0338 33 1 0.5163 4.5763 2.6839 34 1 -0.1351 4.4306 1.0342 35 1 2.6621 5.3403 1.8489 36 1 1.4083 6.2978 1.0194 37 1 3.2615 -1.1451 -0.2023 38 1 0.4569 -2.2274 -0.9815 39 1 2.0533 -2.5925 -1.7718 40 1 1.5959 -5.4677 -2.7104 41 1 2.7163 -2.2114 1.9367 42 1 0.9339 -1.9532 1.6863 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043675108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:32 Heat of formation + Delta-G solvation = 90.405754 kcal Electronic energy + Delta-G solvation = -25437.876770 eV Core-core repulsion = 21841.855886 eV Total energy + Delta-G solvation = -3596.020884 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.53716 -41.42703 -39.51690 -37.68922 -35.99289 -34.87359 -34.01830 -31.54892 -31.17222 -29.55532 -27.92138 -26.62163 -26.16432 -24.84473 -24.06502 -23.62897 -21.69592 -20.54654 -20.06999 -18.98711 -18.92945 -18.49641 -17.42919 -17.03176 -16.77667 -16.50279 -15.83231 -15.69631 -15.26818 -15.04692 -14.71804 -14.63914 -14.43908 -13.86034 -13.64690 -13.33532 -13.28552 -13.19158 -12.97576 -12.83284 -12.67971 -12.60392 -12.42914 -12.29578 -12.08094 -11.95745 -11.92738 -11.57973 -11.57094 -11.33318 -10.90872 -10.81139 -9.93595 -9.60977 -8.97540 -7.95649 -5.29229 0.47729 1.39771 1.42463 1.45205 1.46081 1.56113 1.74328 1.90394 2.46400 3.12222 3.24325 3.35846 3.48821 3.50591 3.72650 3.84590 3.94774 4.10829 4.22933 4.30351 4.33856 4.34135 4.44548 4.49219 4.66198 4.69987 4.72159 4.84922 4.94560 4.97712 5.04095 5.13822 5.17314 5.20548 5.22848 5.35936 5.45349 5.46963 5.65600 5.80400 5.87749 6.38452 6.87373 7.03746 7.36235 7.55474 8.48034 9.21325 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.003151 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.136785 B = 8884.108943 C = 9351.194694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.590 5.590 3 C 0.511 3.489 4 O -0.584 6.584 5 C -0.025 4.025 6 H 0.150 0.850 7 C -0.105 4.105 8 C -0.106 4.106 9 C -0.038 4.038 10 C -0.019 4.019 11 N -0.292 5.292 12 N -0.119 5.119 13 N -0.367 5.367 14 H 0.454 0.546 15 C 0.008 3.992 16 C 0.114 3.886 17 C 0.161 3.839 18 N -0.638 5.638 19 C -0.234 4.234 20 H 0.086 0.914 21 C -0.064 4.064 22 N -0.952 5.952 23 Si 0.979 3.021 24 H -0.265 1.265 25 H -0.290 1.290 26 H -0.295 1.295 27 C 0.116 3.884 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.036 0.964 40 H 0.249 0.751 41 H 0.048 0.952 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 18.730 7.973 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.321 5.321 3 C 0.299 3.701 4 O -0.464 6.464 5 C -0.048 4.048 6 H 0.167 0.833 7 C -0.143 4.143 8 C -0.144 4.144 9 C -0.077 4.077 10 C -0.160 4.160 11 N -0.157 5.157 12 N -0.098 5.098 13 N -0.086 5.086 14 H 0.300 0.700 15 C -0.130 4.130 16 C 0.009 3.991 17 C 0.035 3.965 18 N -0.365 5.365 19 C -0.362 4.362 20 H 0.103 0.897 21 C -0.257 4.257 22 N -0.600 5.600 23 Si 0.807 3.193 24 H -0.189 1.189 25 H -0.216 1.216 26 H -0.222 1.222 27 C -0.010 4.010 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.316 19.380 6.854 21.819 hybrid contribution 0.140 -2.625 -0.435 2.665 sum -7.177 16.755 6.418 19.324 Atomic orbital electron populations 1.22230 0.76872 1.05175 1.03699 1.47997 1.08537 1.04472 1.71101 1.21028 0.87545 0.85868 0.75636 1.90731 1.16277 1.87857 1.51563 1.20230 0.99256 0.86116 0.99208 0.83311 1.21703 1.03491 0.99302 0.89839 1.21679 0.97479 0.91034 1.04194 1.20239 0.99360 1.00638 0.87481 1.22367 1.02369 0.91288 1.00020 1.74754 1.15511 1.25632 0.99812 1.78507 1.19663 0.89933 1.21658 1.44733 1.35716 1.12962 1.15222 0.69968 1.21678 1.04025 0.98781 0.88488 1.23296 0.96699 0.81255 0.97836 1.22510 0.96805 0.84705 0.92525 1.45962 1.81481 1.02340 1.06697 1.19405 1.40006 0.81742 0.95056 0.89653 1.25615 1.02369 1.02497 0.95240 1.69990 1.55592 1.35291 0.99147 0.85004 0.76818 0.79650 0.77815 1.18898 1.21644 1.22180 1.23092 0.99491 0.85170 0.93220 0.91076 0.90741 0.86751 0.86879 0.92211 0.87122 0.89350 0.89638 0.88330 0.89347 0.93899 0.94589 0.94182 0.93363 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 8.50 127.77 1.09 2.11 16 2 N -0.59 -15.10 3.09 -828.32 -2.56 -17.66 16 3 C 0.51 13.06 6.67 87.66 0.58 13.64 16 4 O -0.58 -20.85 15.81 -3.03 -0.05 -20.90 16 5 C -0.02 -0.41 2.08 -12.19 -0.03 -0.43 16 6 H 0.15 1.37 6.44 -2.39 -0.02 1.36 16 7 C -0.11 -1.19 5.16 30.82 0.16 -1.03 16 8 C -0.11 -0.76 5.91 30.82 0.18 -0.58 16 9 C -0.04 -0.52 6.30 29.96 0.19 -0.33 16 10 C -0.02 -0.44 7.11 41.75 0.30 -0.14 16 11 N -0.29 -8.64 12.40 -48.98 -0.61 -9.25 16 12 N -0.12 -3.58 13.40 37.02 0.50 -3.08 16 13 N -0.37 -9.25 6.83 -48.27 -0.33 -9.58 16 14 H 0.45 9.88 8.96 -219.67 -1.97 7.91 16 15 C 0.01 0.17 5.95 41.50 0.25 0.42 16 16 C 0.11 4.15 4.41 46.75 0.21 4.36 16 17 C 0.16 7.14 6.90 86.48 0.60 7.74 16 18 N -0.64 -31.37 3.70 -717.39 -2.65 -34.03 16 19 C -0.23 -12.78 10.70 84.03 0.90 -11.88 16 20 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 21 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 22 N -0.95 -55.93 11.38 21.65 0.25 -55.69 16 23 Si 0.98 44.79 29.55 68.60 2.03 46.81 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 C 0.12 4.36 8.44 86.48 0.73 5.09 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.47 6.17 -2.38 -0.01 1.46 16 30 H 0.11 0.85 6.09 -2.39 -0.01 0.84 16 31 H 0.11 0.70 7.68 -2.39 -0.02 0.69 16 32 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 33 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.09 0.41 8.12 -2.39 -0.02 0.39 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 3.73 7.22 -2.39 -0.02 3.71 16 38 H 0.04 1.81 6.60 -2.38 -0.02 1.79 16 39 H 0.04 1.88 7.15 -2.39 -0.02 1.86 16 40 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 2.14 7.05 -2.39 -0.02 2.12 16 Total: -1.00 -78.49 337.52 1.28 -77.21 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -0.91 Total: 10.28 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 5.62 Total: 15.88 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -5.41 Total: -129.28 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -78.49 1.28 -77.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043675108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.617 kcal (2) G-P(sol) polarization free energy of solvation -78.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds