Wall clock time and date at job start Fri Apr 10 2020 17:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28859 * 125.95231 * 2 1 4 4 C 1.30934 * 109.00230 * 180.02562 * 3 2 1 5 5 N 1.32959 * 108.47049 * 0.02562 * 4 3 2 6 6 C 1.32142 * 107.32192 * 0.02562 * 5 4 3 7 7 C 1.47767 * 126.45015 * 180.02562 * 6 5 4 8 8 O 1.21551 * 120.00248 * 179.97438 * 7 6 5 9 9 N 1.34778 * 119.99576 * 359.97438 * 7 6 5 10 10 C 1.47313 * 135.87729 * 359.62935 * 9 7 6 11 11 C 1.51985 * 87.70440 * 206.05907 * 10 9 7 12 12 C 1.52678 * 121.99990 * 100.02151 * 11 10 9 13 13 N 1.48222 * 85.71549 * 104.27987 * 12 11 10 14 14 C 1.46900 * 111.00080 * 136.72533 * 13 12 11 15 15 C 1.52995 * 109.47253 * 90.27881 * 14 13 12 16 16 C 1.50695 * 109.47317 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99864 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00364 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99681 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00227 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47440 * 89.99808 * 20 18 16 22 22 H 1.48497 * 109.46998 * 210.00000 * 20 18 16 23 23 H 1.48500 * 109.47127 * 329.99445 * 20 18 16 24 24 C 1.48222 * 91.07502 * 23.70022 * 13 12 11 25 25 C 1.47322 * 135.87295 * 179.97438 * 9 7 6 26 26 H 1.08998 * 109.47248 * 89.96555 * 1 2 3 27 27 H 1.09000 * 109.47488 * 209.97511 * 1 2 3 28 28 H 1.09004 * 109.46742 * 329.97301 * 1 2 3 29 29 H 1.07997 * 125.76511 * 179.73603 * 4 3 2 30 30 H 1.08996 * 113.52920 * 320.70426 * 10 9 7 31 31 H 1.09004 * 113.52581 * 91.33259 * 10 9 7 32 32 H 1.08999 * 113.82930 * 218.47987 * 12 11 10 33 33 H 1.09001 * 113.83461 * 350.08009 * 12 11 10 34 34 H 1.08996 * 109.46844 * 210.27985 * 14 13 12 35 35 H 1.09002 * 109.47003 * 330.27406 * 14 13 12 36 36 H 1.09007 * 109.47070 * 300.00228 * 15 14 13 37 37 H 1.09004 * 109.46992 * 59.99828 * 15 14 13 38 38 H 0.96992 * 119.99811 * 180.02562 * 19 18 16 39 39 H 1.08999 * 113.83620 * 222.10475 * 24 13 12 40 40 H 1.09001 * 113.95004 * 90.50973 * 24 13 12 41 41 H 1.09002 * 113.52781 * 268.67065 * 25 9 7 42 42 H 1.09002 * 113.52841 * 39.22529 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0431 0.0000 4 6 3.4740 0.6614 -0.0006 5 7 3.5093 -0.6677 -0.0015 6 6 2.2587 -1.0945 -0.0020 7 6 1.8117 -2.5029 -0.0026 8 8 0.6245 -2.7638 -0.0026 9 7 2.7205 -3.4983 -0.0031 10 6 4.1908 -3.5877 -0.0098 11 6 4.0440 -4.9484 -0.6709 12 6 4.2185 -5.1399 -2.1755 13 7 5.5364 -5.7271 -1.8356 14 6 5.7902 -6.9416 -2.6220 15 6 6.5052 -6.5674 -3.9218 16 6 6.7651 -7.8133 -4.7288 17 1 6.4520 -8.7758 -4.3521 18 6 7.4025 -7.7244 -5.9482 19 7 7.7843 -6.5524 -6.4067 20 14 7.7240 -9.2686 -6.9488 21 1 6.5715 -9.5236 -7.8498 22 1 8.9549 -9.0860 -7.7592 23 1 7.9014 -10.4240 -6.0329 24 6 5.0648 -6.0662 -0.4719 25 6 2.6760 -4.9708 -0.0032 26 1 -0.3634 0.0006 -1.0276 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5143 29 1 4.3333 1.3156 -0.0047 30 1 4.6690 -2.8447 -0.6480 31 1 4.6286 -3.6334 0.9874 32 1 3.5187 -5.8520 -2.6129 33 1 4.2833 -4.2060 -2.7339 34 1 6.4163 -7.6230 -2.0461 35 1 4.8430 -7.4280 -2.8553 36 1 5.8790 -5.8859 -4.4977 37 1 7.4524 -6.0811 -3.6884 38 1 8.2324 -6.4898 -7.2646 39 1 5.7954 -5.8611 0.3105 40 1 4.6211 -7.0585 -0.3911 41 1 2.6864 -5.4066 0.9959 42 1 1.8887 -5.3823 -0.6349 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277943361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:16 Heat of formation + Delta-G solvation = 118.838280 kcal Electronic energy + Delta-G solvation = -24418.693109 eV Core-core repulsion = 20823.905152 eV Total energy + Delta-G solvation = -3594.787957 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.54020 -42.28652 -40.11909 -38.06288 -35.62832 -35.34593 -33.20506 -32.62855 -30.30357 -28.63613 -27.51438 -27.20960 -27.11207 -25.12685 -24.15128 -23.18427 -21.86312 -20.86901 -19.28361 -18.68010 -18.51821 -17.99337 -17.91391 -17.10365 -16.96314 -16.58095 -16.24374 -16.03838 -15.67316 -15.51842 -14.79787 -14.42598 -14.39485 -14.20560 -14.08091 -13.85388 -13.66049 -13.17106 -13.12348 -13.05207 -12.88093 -12.61703 -12.30988 -11.86698 -11.74991 -11.62175 -11.47568 -11.45031 -11.37730 -11.29314 -11.02788 -10.68667 -10.54437 -9.92720 -9.55142 -8.18668 -6.30606 -0.09014 0.93837 1.34457 1.40796 1.42412 1.53490 1.74694 1.98932 2.41055 2.71262 2.94474 3.14644 3.30539 3.37463 3.41367 3.67953 3.76927 4.20106 4.25250 4.30408 4.31680 4.38178 4.51456 4.54864 4.56824 4.59648 4.65528 4.74663 4.80119 4.84679 4.99018 5.05368 5.16549 5.17592 5.25055 5.27961 5.42509 5.50223 5.81107 5.83205 6.16477 6.32085 6.34405 6.62316 6.88053 7.00214 7.38987 8.93522 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.002610 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.478093 B =10725.163371 C =11177.732524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.263 5.263 3 N -0.314 5.314 4 C 0.159 3.841 5 N -0.482 5.482 6 C 0.149 3.851 7 C 0.631 3.369 8 O -0.556 6.556 9 N -0.622 5.622 10 C 0.144 3.856 11 C -0.118 4.118 12 C 0.031 3.969 13 N -0.501 5.501 14 C 0.047 3.953 15 C 0.039 3.961 16 C -0.543 4.543 17 H 0.063 0.937 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.260 1.260 24 C 0.034 3.966 25 C 0.129 3.871 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.256 0.744 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.037 0.963 36 H -0.018 1.018 37 H -0.011 1.011 38 H 0.263 0.737 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.128 0.872 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.641 9.929 18.599 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.059 5.059 3 N -0.153 5.153 4 C -0.140 4.140 5 N -0.210 5.210 6 C -0.127 4.127 7 C 0.417 3.583 8 O -0.434 6.434 9 N -0.354 5.354 10 C 0.023 3.977 11 C -0.119 4.119 12 C -0.098 4.098 13 N -0.223 5.223 14 C -0.081 4.081 15 C 0.002 3.998 16 C -0.582 4.582 17 H 0.081 0.919 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.184 1.184 24 C -0.094 4.094 25 C 0.008 3.992 26 H 0.119 0.881 27 H 0.130 0.870 28 H 0.140 0.860 29 H 0.271 0.729 30 H 0.100 0.900 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.000 1.000 37 H 0.007 0.993 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.110 0.890 41 H 0.146 0.854 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.699 10.826 18.371 25.345 hybrid contribution -0.393 -0.892 -1.139 1.499 sum -14.092 9.934 17.232 24.377 Atomic orbital electron populations 1.22728 0.69893 1.07362 1.06392 1.47372 1.10449 1.02197 1.45923 1.74218 1.04821 1.13766 1.22458 1.26705 0.94934 0.90455 1.01914 1.71278 1.18416 1.12232 1.19068 1.24045 0.87438 0.92151 1.09027 1.15812 0.84202 0.81101 0.77216 1.90780 1.15848 1.83400 1.53339 1.49295 1.09229 1.07440 1.69483 1.22748 0.78419 0.94423 1.02129 1.22809 0.96265 0.97399 0.95449 1.23564 0.91063 1.00257 0.94882 1.68578 1.27145 1.22970 1.03643 1.22488 0.98836 0.91519 0.95228 1.18805 0.94088 0.95036 0.91913 1.21678 1.37856 0.94502 1.04115 0.91850 1.26012 0.95372 0.99456 0.99131 1.70127 1.41123 1.25799 1.20380 0.85426 0.77666 0.79317 0.78504 1.19861 1.20890 1.18399 1.23722 0.95795 0.97058 0.92845 1.23141 0.96162 0.77142 1.02800 0.88090 0.87047 0.86012 0.72860 0.90048 0.86186 0.90719 0.91465 0.91502 0.94482 0.99951 0.99257 0.92847 0.87124 0.89035 0.85444 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.86 127.77 1.39 2.45 16 2 N -0.26 -5.68 3.74 -361.52 -1.35 -7.03 16 3 N -0.31 -6.81 12.08 -61.29 -0.74 -7.55 16 4 C 0.16 3.20 13.03 180.79 2.36 5.55 16 5 N -0.48 -11.68 9.95 -193.33 -1.92 -13.60 16 6 C 0.15 3.66 7.80 136.70 1.07 4.72 16 7 C 0.63 15.96 8.07 86.76 0.70 16.66 16 8 O -0.56 -15.43 15.45 -3.87 -0.06 -15.49 16 9 N -0.62 -13.68 3.70 -862.03 -3.19 -16.87 16 10 C 0.14 2.91 7.55 83.59 0.63 3.54 16 11 C -0.12 -2.46 1.46 -52.89 -0.08 -2.53 16 12 C 0.03 0.93 7.78 85.94 0.67 1.59 16 13 N -0.50 -16.66 6.15 -930.44 -5.73 -22.38 16 14 C 0.05 1.90 4.74 86.30 0.41 2.31 16 15 C 0.04 2.10 5.28 29.84 0.16 2.26 16 16 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 17 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 18 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 19 N -0.93 -57.99 13.29 21.45 0.28 -57.70 16 20 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 C 0.03 0.74 7.78 85.94 0.67 1.41 16 25 C 0.13 2.23 8.44 83.68 0.71 2.93 16 26 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.11 1.67 6.32 -2.39 -0.02 1.66 16 28 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.26 2.97 8.06 -2.91 -0.02 2.95 16 30 H 0.08 1.99 7.55 -2.39 -0.02 1.97 16 31 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.07 2.20 7.48 -2.39 -0.02 2.18 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 2.57 8.08 -2.39 -0.02 2.55 16 35 H 0.04 1.42 7.39 -2.39 -0.02 1.40 16 36 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 37 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 38 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.09 1.70 7.93 -2.39 -0.02 1.68 16 41 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -75.71 354.72 -0.29 -76.00 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.02 Total: 7.78 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 9.37 Total: 10.50 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -12.65 Total: -125.14 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.06 Total: -15.49 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -75.71 -0.29 -76.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277943361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.837 kcal (2) G-P(sol) polarization free energy of solvation -75.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds