Wall clock time and date at job start Fri Apr 10 2020 17:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 119.99754 * 2 1 4 4 H 1.48496 * 109.47437 * 270.00697 * 3 2 1 5 5 H 1.48504 * 109.46972 * 30.00756 * 3 2 1 6 6 H 1.48503 * 109.46850 * 150.00262 * 3 2 1 7 7 C 1.38943 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00166 * 359.97438 * 7 2 1 9 9 N 1.37105 * 120.00017 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99977 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00335 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00096 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.47448 * 180.02562 * 12 10 9 14 14 C 1.34227 * 117.00100 * 179.97438 * 13 12 10 15 15 O 1.20827 * 119.99901 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.46505 * 109.46909 * 180.02562 * 16 14 13 18 18 C 1.47068 * 126.29884 * 85.00553 * 17 16 14 19 19 C 1.54066 * 110.04916 * 208.96145 * 18 17 16 20 20 C 1.55602 * 104.29476 * 314.83004 * 19 18 17 21 21 S 1.66842 * 126.22232 * 264.93402 * 17 16 14 22 22 O 1.42107 * 105.14140 * 61.13608 * 21 17 16 23 23 O 1.42098 * 105.27888 * 291.49366 * 21 17 16 24 24 H 0.96996 * 120.00571 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99758 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47100 * 60.00113 * 12 10 9 27 27 H 1.09004 * 109.47286 * 300.00032 * 12 10 9 28 28 H 1.08999 * 109.46956 * 60.00581 * 16 14 13 29 29 H 1.08996 * 109.47713 * 300.00242 * 16 14 13 30 30 H 1.09002 * 109.35873 * 88.81413 * 18 17 16 31 31 H 1.09000 * 109.35301 * 329.10530 * 18 17 16 32 32 H 1.08992 * 110.46854 * 73.53536 * 19 18 17 33 33 H 1.09002 * 110.46579 * 196.12669 * 19 18 17 34 34 H 1.08998 * 111.16728 * 155.79272 * 20 19 18 35 35 H 1.09005 * 111.16478 * 280.05459 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0466 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3703 -0.0011 11 8 3.4475 -3.4208 -0.0011 12 6 5.5608 -2.3703 -0.0022 13 8 6.0449 -3.7392 -0.0026 14 6 7.3756 -3.9150 -0.0042 15 8 8.1116 -2.9568 -0.0047 16 6 7.9517 -5.3076 -0.0041 17 7 9.4147 -5.2308 -0.0053 18 6 10.2797 -5.0816 1.1747 19 6 11.5757 -4.3429 0.7895 20 6 12.0264 -5.0231 -0.5354 21 16 10.4043 -5.2984 -1.3468 22 8 10.0297 -4.1812 -2.1411 23 8 10.2896 -6.6298 -1.8301 24 1 -0.4851 0.8400 0.0004 25 1 3.8649 -0.3631 -0.0014 26 1 5.9248 -1.8561 0.8872 27 1 5.9235 -1.8569 -0.8928 28 1 7.6147 -5.8402 -0.8934 29 1 7.6169 -5.8393 0.8866 30 1 10.5288 -6.0676 1.5670 31 1 9.7524 -4.5113 1.9393 32 1 11.3765 -3.2839 0.6257 33 1 12.3332 -4.4741 1.5622 34 1 12.6542 -4.3563 -1.1264 35 1 12.5340 -5.9678 -0.3399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318619850.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:20 Heat of formation + Delta-G solvation = -163.936888 kcal Electronic energy + Delta-G solvation = -22961.764496 eV Core-core repulsion = 19088.480836 eV Total energy + Delta-G solvation = -3873.283660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.081 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.40257 -38.41458 -37.63960 -37.30768 -36.23801 -36.02048 -34.04665 -33.62308 -31.78768 -29.37218 -27.89639 -26.20314 -24.39861 -22.63450 -21.30089 -19.63704 -19.22508 -18.57951 -17.97359 -17.60461 -17.30393 -16.53199 -16.23116 -15.95692 -15.49220 -15.17610 -14.92078 -14.83845 -14.36525 -14.08820 -13.70617 -13.50646 -13.30189 -12.89920 -12.51229 -12.36442 -12.26473 -12.21844 -12.17096 -12.10836 -11.96797 -11.45139 -11.25088 -10.93198 -10.69717 -10.63919 -10.49235 -10.04173 -9.66253 -9.53813 -8.64695 -8.27990 -6.38025 -3.90885 -0.19031 1.95784 2.23187 2.67961 2.99735 3.04835 3.13082 3.23513 3.42528 3.57360 3.85273 4.04953 4.06086 4.35684 4.39962 4.45719 4.82953 4.87605 4.93426 5.02558 5.10113 5.12673 5.15088 5.35418 5.38436 5.43370 5.57576 5.69656 5.91279 6.53059 7.46205 7.81197 8.02431 8.49253 8.85044 9.31325 9.67171 10.74319 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.033069 B = 0.002857 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.518941 B = 9798.326839 C =10049.937718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.122 0.878 9 N -0.580 5.580 10 C 0.448 3.552 11 O -0.557 6.557 12 C 0.059 3.941 13 O -0.326 6.326 14 C 0.430 3.570 15 O -0.496 6.496 16 C 0.171 3.829 17 N -0.978 5.978 18 C 0.080 3.920 19 C -0.125 4.125 20 C -0.596 4.596 21 S 2.568 3.432 22 O -0.942 6.942 23 O -0.954 6.954 24 H 0.275 0.725 25 H 0.373 0.627 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.924 -8.327 3.259 28.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.220 5.220 10 C 0.233 3.767 11 O -0.439 6.439 12 C -0.019 4.019 13 O -0.240 6.240 14 C 0.270 3.730 15 O -0.383 6.383 16 C 0.045 3.955 17 N -0.818 5.818 18 C -0.045 4.045 19 C -0.164 4.164 20 C -0.727 4.727 21 S 2.664 3.336 22 O -0.931 6.931 23 O -0.943 6.943 24 H 0.086 0.914 25 H 0.206 0.794 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.160 0.840 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 26.105 -8.777 2.287 27.636 hybrid contribution 1.011 1.855 0.637 2.207 sum 27.116 -6.922 2.924 28.138 Atomic orbital electron populations 1.69611 1.05653 1.27749 1.48471 1.25033 0.95515 0.98058 0.97287 0.86675 0.79813 0.83861 0.79116 1.19392 1.19978 1.19388 1.19428 0.78684 0.96878 1.48618 0.85996 1.42042 1.07636 1.05728 1.66616 1.19205 0.86962 0.85122 0.85406 1.90603 1.69070 1.30701 1.53501 1.22740 0.95033 0.80548 1.03588 1.86541 1.23047 1.31301 1.83101 1.24518 0.81356 0.93645 0.73520 1.90653 1.60616 1.42548 1.44439 1.20377 0.76948 0.90660 1.07552 1.56991 1.12092 1.89707 1.23042 1.22110 0.90309 1.01618 0.90506 1.22644 0.96691 1.01300 0.95763 1.30833 1.20414 1.10985 1.10449 1.06600 0.78119 0.75144 0.73738 1.93673 1.79957 1.52943 1.66522 1.93633 1.85226 1.37567 1.77915 0.91400 0.79390 0.89498 0.89348 0.85731 0.85426 0.90097 0.88645 0.88284 0.87100 0.84026 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.26 13.96 55.50 0.77 -24.49 16 2 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.17 27.74 -169.99 -4.71 14.45 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 7 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 8 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 9 N -0.58 -13.87 5.09 -10.97 -0.06 -13.92 16 10 C 0.45 10.43 7.86 -10.99 -0.09 10.34 16 11 O -0.56 -15.30 16.08 -14.11 -0.23 -15.52 16 12 C 0.06 1.06 5.94 36.00 0.21 1.28 16 13 O -0.33 -5.71 9.75 -45.90 -0.45 -6.15 16 14 C 0.43 6.27 8.03 36.01 0.29 6.56 16 15 O -0.50 -8.11 16.18 -18.75 -0.30 -8.41 16 16 C 0.17 1.71 6.94 -5.19 -0.04 1.68 16 17 N -0.98 -8.79 2.80 -114.62 -0.32 -9.11 16 18 C 0.08 0.44 6.83 -3.18 -0.02 0.42 16 19 C -0.12 -0.53 6.79 -24.79 -0.17 -0.70 16 20 C -0.60 -2.67 7.51 38.54 0.29 -2.38 16 21 S 2.57 24.71 6.16 -107.50 -0.66 24.04 16 22 O -0.94 -13.41 18.14 -57.43 -1.04 -14.45 16 23 O -0.95 -11.66 18.14 -57.43 -1.04 -12.71 16 24 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 26 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 27 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 28 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.14 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 323.19 15.07 4.87 4.87 Total: -1.00 -39.94 323.19 -6.96 -46.89 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.02 Total: 4.99 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 0.23 Total: 9.52 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.40 Total: -47.52 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -3.06 Total: -57.24 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.45 kcal Atomic # 16 Polarization: 24.71 SS G_CDS: -0.66 Total: 24.04 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -39.94 -6.96 -46.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318619850.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.046 kcal (2) G-P(sol) polarization free energy of solvation -39.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds