Wall clock time and date at job start Fri Apr 10 2020 17:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 119.99754 * 2 1 4 4 H 1.48496 * 109.47437 * 270.00697 * 3 2 1 5 5 H 1.48504 * 109.46972 * 30.00756 * 3 2 1 6 6 H 1.48503 * 109.46850 * 150.00262 * 3 2 1 7 7 C 1.38943 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00166 * 359.97438 * 7 2 1 9 9 N 1.37105 * 120.00017 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99977 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00335 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00096 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.47448 * 180.02562 * 12 10 9 14 14 C 1.34227 * 117.00100 * 179.97438 * 13 12 10 15 15 O 1.20827 * 119.99901 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.46505 * 109.46909 * 180.02562 * 16 14 13 18 18 C 1.47068 * 126.29884 * 85.00553 * 17 16 14 19 19 C 1.54066 * 110.04916 * 208.96145 * 18 17 16 20 20 C 1.55602 * 104.29476 * 314.83004 * 19 18 17 21 21 S 1.66842 * 126.22232 * 264.93402 * 17 16 14 22 22 O 1.42107 * 105.14140 * 61.13608 * 21 17 16 23 23 O 1.42098 * 105.27888 * 291.49366 * 21 17 16 24 24 H 0.96996 * 120.00571 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99758 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47100 * 60.00113 * 12 10 9 27 27 H 1.09004 * 109.47286 * 300.00032 * 12 10 9 28 28 H 1.08999 * 109.46956 * 60.00581 * 16 14 13 29 29 H 1.08996 * 109.47713 * 300.00242 * 16 14 13 30 30 H 1.09002 * 109.35873 * 88.81413 * 18 17 16 31 31 H 1.09000 * 109.35301 * 329.10530 * 18 17 16 32 32 H 1.08992 * 110.46854 * 73.53536 * 19 18 17 33 33 H 1.09002 * 110.46579 * 196.12669 * 19 18 17 34 34 H 1.08998 * 111.16728 * 155.79272 * 20 19 18 35 35 H 1.09005 * 111.16478 * 280.05459 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0466 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3703 -0.0011 11 8 3.4475 -3.4208 -0.0011 12 6 5.5608 -2.3703 -0.0022 13 8 6.0449 -3.7392 -0.0026 14 6 7.3756 -3.9150 -0.0042 15 8 8.1116 -2.9568 -0.0047 16 6 7.9517 -5.3076 -0.0041 17 7 9.4147 -5.2308 -0.0053 18 6 10.2797 -5.0816 1.1747 19 6 11.5757 -4.3429 0.7895 20 6 12.0264 -5.0231 -0.5354 21 16 10.4043 -5.2984 -1.3468 22 8 10.0297 -4.1812 -2.1411 23 8 10.2896 -6.6298 -1.8301 24 1 -0.4851 0.8400 0.0004 25 1 3.8649 -0.3631 -0.0014 26 1 5.9248 -1.8561 0.8872 27 1 5.9235 -1.8569 -0.8928 28 1 7.6147 -5.8402 -0.8934 29 1 7.6169 -5.8393 0.8866 30 1 10.5288 -6.0676 1.5670 31 1 9.7524 -4.5113 1.9393 32 1 11.3765 -3.2839 0.6257 33 1 12.3332 -4.4741 1.5622 34 1 12.6542 -4.3563 -1.1264 35 1 12.5340 -5.9678 -0.3399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318619850.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:19 Heat of formation + Delta-G solvation = -197.510880 kcal Electronic energy + Delta-G solvation = -22963.220374 eV Core-core repulsion = 19088.480836 eV Total energy + Delta-G solvation = -3874.739537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.081 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64852 -40.20811 -38.36499 -38.11058 -37.33187 -36.95399 -36.09216 -34.23405 -33.87523 -30.64815 -28.91932 -26.88632 -26.20701 -23.11649 -22.39257 -21.55074 -20.54031 -19.95955 -19.04327 -18.47593 -18.11127 -17.69935 -17.55117 -17.20863 -16.82570 -16.49481 -16.02241 -15.70864 -15.44451 -15.31931 -14.76495 -14.49133 -14.37705 -14.20299 -14.03080 -13.71079 -13.58489 -13.22756 -13.06515 -13.01797 -12.74810 -12.47144 -12.42678 -12.07782 -12.01291 -11.85081 -11.75264 -11.60148 -11.45704 -10.63445 -10.35392 -10.19898 -8.47209 -6.10378 -0.81847 1.10432 1.17224 1.28980 1.32854 1.42817 1.62610 1.74402 2.19094 2.61154 2.80174 2.96951 3.07091 3.35657 3.60996 3.67333 3.87303 3.92113 4.07050 4.09586 4.13178 4.28736 4.42946 4.53583 4.68438 4.86365 4.97304 5.09180 5.27700 5.36472 5.47324 5.84147 6.45446 6.64815 6.76362 7.24351 7.76064 8.69481 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.033069 B = 0.002857 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.518941 B = 9798.326839 C =10049.937718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.961 3.039 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.232 1.232 7 C -0.334 4.334 8 H 0.061 0.939 9 N -0.577 5.577 10 C 0.448 3.552 11 O -0.607 6.607 12 C 0.068 3.932 13 O -0.347 6.347 14 C 0.429 3.571 15 O -0.514 6.514 16 C 0.169 3.831 17 N -0.981 5.981 18 C 0.068 3.932 19 C -0.124 4.124 20 C -0.552 4.552 21 S 2.543 3.457 22 O -1.003 7.003 23 O -0.993 6.993 24 H 0.283 0.717 25 H 0.393 0.607 26 H 0.118 0.882 27 H 0.108 0.892 28 H 0.129 0.871 29 H 0.163 0.837 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.150 0.850 34 H 0.161 0.839 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.086 -7.209 4.798 32.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.781 3.219 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.155 1.155 7 C -0.463 4.463 8 H 0.079 0.921 9 N -0.218 5.218 10 C 0.235 3.765 11 O -0.492 6.492 12 C -0.009 4.009 13 O -0.262 6.262 14 C 0.270 3.730 15 O -0.402 6.402 16 C 0.042 3.958 17 N -0.821 5.821 18 C -0.056 4.056 19 C -0.164 4.164 20 C -0.687 4.687 21 S 2.645 3.355 22 O -0.993 6.993 23 O -0.983 6.983 24 H 0.092 0.908 25 H 0.229 0.771 26 H 0.136 0.864 27 H 0.126 0.874 28 H 0.147 0.853 29 H 0.181 0.819 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.168 0.832 34 H 0.179 0.821 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 30.264 -7.672 3.808 31.453 hybrid contribution -0.235 1.390 0.215 1.426 sum 30.029 -6.282 4.023 30.942 Atomic orbital electron populations 1.69775 1.08059 1.29593 1.49056 1.26082 0.96462 1.02622 0.95553 0.85416 0.79575 0.76806 0.80106 1.18126 1.19472 1.15503 1.19015 0.80717 0.95383 1.51156 0.92058 1.41827 1.06148 1.07013 1.66853 1.20183 0.89331 0.84038 0.82899 1.90576 1.70937 1.32548 1.55112 1.22550 0.90588 0.81858 1.05935 1.86560 1.25114 1.30775 1.83712 1.25501 0.79961 0.95268 0.72301 1.90634 1.60548 1.43571 1.45440 1.20648 0.77742 0.87976 1.09427 1.56963 1.11689 1.89293 1.24170 1.22502 0.90239 1.03714 0.89155 1.22802 0.96993 1.00243 0.96327 1.30632 1.15307 1.13289 1.09505 1.07069 0.80620 0.73628 0.74159 1.93597 1.82299 1.54282 1.69100 1.93578 1.86728 1.38699 1.79273 0.90779 0.77133 0.86440 0.87409 0.85342 0.81940 0.86891 0.88611 0.89665 0.83165 0.82057 0.80606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 13.96 21.66 0.30 -54.75 16 2 C -0.01 -0.39 5.50 84.93 0.47 0.07 16 3 Si 0.96 38.41 27.74 68.60 1.90 40.32 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 6 H -0.23 -7.83 6.52 99.48 0.65 -7.18 16 7 C -0.33 -19.54 10.16 84.04 0.85 -18.68 16 8 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16 9 N -0.58 -27.60 5.09 -306.99 -1.56 -29.16 16 10 C 0.45 21.13 7.86 87.66 0.69 21.82 16 11 O -0.61 -34.81 16.08 15.73 0.25 -34.56 16 12 C 0.07 2.38 5.94 71.23 0.42 2.80 16 13 O -0.35 -11.99 9.75 -45.04 -0.44 -12.43 16 14 C 0.43 12.13 8.03 71.24 0.57 12.70 16 15 O -0.51 -16.22 16.18 21.96 0.36 -15.87 16 16 C 0.17 3.20 6.94 85.63 0.59 3.80 16 17 N -0.98 -15.95 2.80 -516.54 -1.45 -17.40 16 18 C 0.07 0.50 6.83 86.63 0.59 1.09 16 19 C -0.12 -0.52 6.79 31.85 0.22 -0.30 16 20 C -0.55 -2.70 7.51 72.88 0.55 -2.16 16 21 S 2.54 46.79 6.16 -56.49 -0.35 46.45 16 22 O -1.00 -29.31 18.14 -127.76 -2.32 -31.63 16 23 O -0.99 -24.22 18.14 -127.76 -2.32 -26.53 16 24 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 25 H 0.39 15.51 5.76 -92.71 -0.53 14.97 16 26 H 0.12 3.40 8.13 -2.39 -0.02 3.38 16 27 H 0.11 3.37 8.13 -2.38 -0.02 3.35 16 28 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.11 0.15 8.14 -2.39 -0.02 0.14 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.15 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.16 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.18 -0.19 8.14 -2.38 -0.02 -0.20 16 Total: -1.00 -94.71 323.19 -0.12 -94.83 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.54 Total: 19.59 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 4.95 Total: 21.15 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -2.71 Total: -101.32 kcal Atomic # 8 Polarization: -116.55 SS G_CDS: -4.47 Total: -121.02 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.90 Total: 40.32 kcal Atomic # 16 Polarization: 46.79 SS G_CDS: -0.35 Total: 46.45 kcal Total: -94.71 -0.12 -94.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318619850.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.680 kcal (2) G-P(sol) polarization free energy of solvation -94.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds