Wall clock time and date at job start Fri Apr 10 2020 17:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.38356 * 127.15086 * 2 1 4 4 C 1.39784 * 126.56278 * 359.97438 * 3 2 1 5 5 H 1.07990 * 119.99937 * 5.89831 * 4 3 2 6 6 C 1.40079 * 119.99787 * 185.89991 * 4 3 2 7 7 N 1.30818 * 120.00007 * 6.44701 * 6 4 3 8 8 Si 1.86802 * 120.00049 * 186.44417 * 6 4 3 9 9 H 1.48499 * 109.47321 * 265.01629 * 8 6 4 10 10 H 1.48499 * 109.46774 * 25.01756 * 8 6 4 11 11 H 1.48500 * 109.47127 * 145.01048 * 8 6 4 12 12 N 1.33102 * 106.87243 * 179.73573 * 3 2 1 13 13 N 1.28511 * 109.74196 * 0.23618 * 12 3 2 14 14 C 1.32388 * 110.20972 * 0.02562 * 13 12 3 15 15 S 1.76199 * 126.26079 * 180.02562 * 14 13 12 16 16 C 1.80999 * 99.99815 * 359.97438 * 15 14 13 17 17 C 1.53007 * 109.46739 * 179.97438 * 16 15 14 18 18 N 1.46502 * 109.46765 * 179.97438 * 17 16 15 19 19 S 1.65605 * 119.99557 * 164.99875 * 18 17 16 20 20 C 1.81395 * 104.44880 * 65.00494 * 19 18 17 21 21 O 1.42104 * 104.27212 * 181.07129 * 19 18 17 22 22 O 1.42092 * 104.27708 * 308.93081 * 19 18 17 23 23 H 1.09010 * 109.46877 * 90.00510 * 1 2 3 24 24 H 1.09003 * 109.47456 * 209.99870 * 1 2 3 25 25 H 1.08999 * 109.47490 * 330.00543 * 1 2 3 26 26 H 0.97004 * 120.00095 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.46870 * 299.99427 * 16 15 14 28 28 H 1.08993 * 109.47400 * 59.99540 * 16 15 14 29 29 H 1.08998 * 109.47250 * 299.99799 * 17 16 15 30 30 H 1.09002 * 109.47231 * 59.99932 * 17 16 15 31 31 H 0.96998 * 120.00173 * 344.99981 * 18 17 16 32 32 H 1.09006 * 109.47460 * 59.99525 * 20 19 18 33 33 H 1.09003 * 109.47178 * 179.97438 * 20 19 18 34 34 H 1.09004 * 109.46939 * 299.99802 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9085 2.4445 -0.0005 5 1 0.8641 2.7019 0.0952 6 6 2.8704 3.4551 -0.1251 7 7 4.1179 3.1445 -0.3672 8 14 2.3718 5.2464 0.0543 9 1 2.1059 5.8231 -1.2881 10 1 1.1439 5.3376 0.8844 11 1 3.4693 6.0025 0.7093 12 7 3.5490 0.6415 0.0059 13 7 3.5370 -0.6436 0.0044 14 6 2.2904 -1.0893 -0.0030 15 16 1.7874 -2.7780 -0.0070 16 6 3.4060 -3.5880 0.0009 17 6 3.2164 -5.1063 -0.0006 18 7 4.5265 -5.7619 0.0052 19 16 4.6452 -7.3715 0.3763 20 6 3.7646 -8.2121 -0.9685 21 8 6.0379 -7.6450 0.3078 22 8 3.9319 -7.5029 1.5981 23 1 -0.3633 -0.0001 -1.0278 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 4.7840 3.8444 -0.4539 27 1 3.9655 -3.2904 -0.8860 28 1 3.9562 -3.2918 0.8940 29 1 2.6570 -5.4035 0.8864 30 1 2.6660 -5.4028 -0.8935 31 1 5.3244 -5.2533 -0.2083 32 1 4.2435 -7.9772 -1.9191 33 1 3.7932 -9.2893 -0.8040 34 1 2.7283 -7.8750 -0.9907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321100546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:24 Heat of formation + Delta-G solvation = -4.545450 kcal Electronic energy + Delta-G solvation = -20006.240465 eV Core-core repulsion = 16614.914159 eV Total energy + Delta-G solvation = -3391.326306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 306.061 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.56696 -37.35649 -36.24685 -36.01565 -33.74517 -33.37370 -30.05898 -29.76460 -29.32343 -26.56736 -25.62523 -23.18926 -20.89209 -20.45782 -19.74399 -17.93226 -17.41761 -16.71163 -16.52073 -16.11418 -15.48202 -15.28439 -15.13340 -14.69517 -14.43312 -13.72062 -13.53370 -13.48408 -13.20413 -12.74613 -12.46513 -12.33935 -12.28082 -12.24533 -12.06482 -11.77303 -11.40278 -11.33675 -11.26675 -10.97958 -10.44138 -10.36523 -9.79880 -9.74350 -9.63359 -8.77132 -8.51815 -8.44144 -6.92954 -6.71348 -4.62353 -0.01053 1.80498 2.54963 2.72945 2.87706 3.03967 3.08044 3.30351 3.55402 3.83555 3.92609 4.18126 4.36200 4.40103 4.55634 4.66412 4.90182 5.23300 5.26886 5.31477 5.43493 5.50182 5.71114 5.84428 6.00033 6.07531 6.70077 6.73020 6.84271 7.18836 7.42565 7.82567 8.13132 8.65182 8.79986 10.22166 10.56698 Molecular weight = 306.06amu Principal moments of inertia in cm(-1) A = 0.036386 B = 0.002713 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.336112 B =10318.025808 C =10862.966332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.515 5.515 3 C 0.349 3.651 4 C -0.448 4.448 5 H 0.085 0.915 6 C 0.080 3.920 7 N -0.737 5.737 8 Si 0.921 3.079 9 H -0.269 1.269 10 H -0.262 1.262 11 H -0.274 1.274 12 N -0.335 5.335 13 N -0.283 5.283 14 C 0.043 3.957 15 S -0.043 6.043 16 C -0.105 4.105 17 C 0.130 3.870 18 N -1.115 6.115 19 S 2.618 3.382 20 C -0.674 4.674 21 O -0.960 6.960 22 O -0.956 6.956 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.280 0.720 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.422 0.578 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.978 -15.674 -2.611 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.218 5.218 3 C 0.105 3.895 4 C -0.488 4.488 5 H 0.103 0.897 6 C -0.146 4.146 7 N -0.361 5.361 8 Si 0.745 3.255 9 H -0.195 1.195 10 H -0.185 1.185 11 H -0.199 1.199 12 N -0.183 5.183 13 N -0.129 5.129 14 C -0.328 4.328 15 S 0.183 5.817 16 C -0.255 4.255 17 C 0.002 3.998 18 N -0.876 5.876 19 S 2.709 3.291 20 C -0.824 4.824 21 O -0.950 6.950 22 O -0.946 6.946 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.257 0.743 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.036 -16.611 -1.851 17.195 hybrid contribution -0.555 1.804 -0.750 2.031 sum -4.591 -14.807 -2.602 15.720 Atomic orbital electron populations 1.21499 0.78451 1.02707 1.01686 1.46034 1.06115 1.05266 1.64337 1.21617 0.84716 0.88415 0.94731 1.18110 0.95326 0.86463 1.48912 0.89713 1.25796 0.94302 1.01372 0.93137 1.69986 1.01697 1.35178 1.29228 0.86104 0.79422 0.80802 0.79219 1.19461 1.18548 1.19870 1.75429 1.15391 0.97888 1.29589 1.74518 1.15136 1.07610 1.15646 1.25193 0.91593 0.92384 1.23669 1.84234 1.09374 0.92319 1.95823 1.23417 0.99032 0.95063 1.08035 1.21010 0.83858 0.92026 1.02860 1.55556 1.15036 1.28213 1.88819 1.04629 0.74703 0.73653 0.76130 1.30539 1.15869 1.14721 1.21274 1.93627 1.30035 1.83799 1.87546 1.93625 1.75526 1.85272 1.40154 0.92477 0.91521 0.90351 0.90882 0.88278 0.88113 0.89251 0.90964 0.74269 0.85160 0.85409 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.89 59.84 0.65 2.44 16 2 N -0.52 -12.14 3.26 -123.17 -0.40 -12.54 16 3 C 0.35 9.60 7.50 -154.80 -1.16 8.44 16 4 C -0.45 -11.67 9.05 -38.31 -0.35 -12.02 16 5 H 0.08 1.99 7.27 -52.49 -0.38 1.61 16 6 C 0.08 2.01 5.49 -17.29 -0.09 1.91 16 7 N -0.74 -19.99 12.00 55.56 0.67 -19.32 16 8 Si 0.92 18.23 29.57 -169.99 -5.03 13.21 16 9 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 10 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 11 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 12 N -0.34 -9.93 10.56 31.26 0.33 -9.60 16 13 N -0.28 -7.56 11.62 30.89 0.36 -7.20 16 14 C 0.04 1.01 8.09 -87.28 -0.71 0.30 16 15 S -0.04 -0.71 21.79 -107.50 -2.34 -3.05 16 16 C -0.10 -1.46 5.37 37.16 0.20 -1.26 16 17 C 0.13 1.27 6.13 -4.04 -0.02 1.25 16 18 N -1.12 -9.83 5.89 -10.61 -0.06 -9.89 16 19 S 2.62 22.53 6.10 -107.50 -0.66 21.87 16 20 C -0.67 -3.18 10.89 101.05 1.10 -2.07 16 21 O -0.96 -11.62 18.08 -57.54 -1.04 -12.66 16 22 O -0.96 -11.87 17.50 -57.54 -1.01 -12.88 16 23 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 24 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 25 H 0.08 1.30 7.48 -51.93 -0.39 0.91 16 26 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 27 H 0.10 1.43 8.14 -51.91 -0.42 1.01 16 28 H 0.10 1.56 8.14 -51.92 -0.42 1.14 16 29 H 0.09 0.87 7.69 -51.93 -0.40 0.47 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.42 3.52 8.62 -34.48 -0.30 3.22 16 32 H 0.13 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -37.78 325.27 -8.63 -46.40 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -3.97 Total: 1.77 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -0.38 Total: -1.01 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.89 Total: -58.56 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -2.05 Total: -25.54 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: 21.82 SS G_CDS: -3.00 Total: 18.82 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.78 -8.63 -46.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321100546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.857 kcal (2) G-P(sol) polarization free energy of solvation -37.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds