Wall clock time and date at job start Fri Apr 10 2020 17:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.38356 * 127.15086 * 2 1 4 4 C 1.39784 * 126.56278 * 359.97438 * 3 2 1 5 5 H 1.07990 * 119.99937 * 5.89831 * 4 3 2 6 6 C 1.40079 * 119.99787 * 185.89991 * 4 3 2 7 7 N 1.30818 * 120.00007 * 6.44701 * 6 4 3 8 8 Si 1.86802 * 120.00049 * 186.44417 * 6 4 3 9 9 H 1.48499 * 109.47321 * 265.01629 * 8 6 4 10 10 H 1.48499 * 109.46774 * 25.01756 * 8 6 4 11 11 H 1.48500 * 109.47127 * 145.01048 * 8 6 4 12 12 N 1.33102 * 106.87243 * 179.73573 * 3 2 1 13 13 N 1.28511 * 109.74196 * 0.23618 * 12 3 2 14 14 C 1.32388 * 110.20972 * 0.02562 * 13 12 3 15 15 S 1.76199 * 126.26079 * 180.02562 * 14 13 12 16 16 C 1.80999 * 99.99815 * 359.97438 * 15 14 13 17 17 C 1.53007 * 109.46739 * 179.97438 * 16 15 14 18 18 N 1.46502 * 109.46765 * 179.97438 * 17 16 15 19 19 S 1.65605 * 119.99557 * 164.99875 * 18 17 16 20 20 C 1.81395 * 104.44880 * 65.00494 * 19 18 17 21 21 O 1.42104 * 104.27212 * 181.07129 * 19 18 17 22 22 O 1.42092 * 104.27708 * 308.93081 * 19 18 17 23 23 H 1.09010 * 109.46877 * 90.00510 * 1 2 3 24 24 H 1.09003 * 109.47456 * 209.99870 * 1 2 3 25 25 H 1.08999 * 109.47490 * 330.00543 * 1 2 3 26 26 H 0.97004 * 120.00095 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.46870 * 299.99427 * 16 15 14 28 28 H 1.08993 * 109.47400 * 59.99540 * 16 15 14 29 29 H 1.08998 * 109.47250 * 299.99799 * 17 16 15 30 30 H 1.09002 * 109.47231 * 59.99932 * 17 16 15 31 31 H 0.96998 * 120.00173 * 344.99981 * 18 17 16 32 32 H 1.09006 * 109.47460 * 59.99525 * 20 19 18 33 33 H 1.09003 * 109.47178 * 179.97438 * 20 19 18 34 34 H 1.09004 * 109.46939 * 299.99802 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9085 2.4445 -0.0005 5 1 0.8641 2.7019 0.0952 6 6 2.8704 3.4551 -0.1251 7 7 4.1179 3.1445 -0.3672 8 14 2.3718 5.2464 0.0543 9 1 2.1059 5.8231 -1.2881 10 1 1.1439 5.3376 0.8844 11 1 3.4693 6.0025 0.7093 12 7 3.5490 0.6415 0.0059 13 7 3.5370 -0.6436 0.0044 14 6 2.2904 -1.0893 -0.0030 15 16 1.7874 -2.7780 -0.0070 16 6 3.4060 -3.5880 0.0009 17 6 3.2164 -5.1063 -0.0006 18 7 4.5265 -5.7619 0.0052 19 16 4.6452 -7.3715 0.3763 20 6 3.7646 -8.2121 -0.9685 21 8 6.0379 -7.6450 0.3078 22 8 3.9319 -7.5029 1.5981 23 1 -0.3633 -0.0001 -1.0278 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 4.7840 3.8444 -0.4539 27 1 3.9655 -3.2904 -0.8860 28 1 3.9562 -3.2918 0.8940 29 1 2.6570 -5.4035 0.8864 30 1 2.6660 -5.4028 -0.8935 31 1 5.3244 -5.2533 -0.2083 32 1 4.2435 -7.9772 -1.9191 33 1 3.7932 -9.2893 -0.8040 34 1 2.7283 -7.8750 -0.9907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321100546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:23 Heat of formation + Delta-G solvation = -34.788883 kcal Electronic energy + Delta-G solvation = -20007.551919 eV Core-core repulsion = 16614.914159 eV Total energy + Delta-G solvation = -3392.637760 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 306.061 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.45286 -38.17417 -37.05941 -36.83440 -35.62314 -35.14219 -31.40012 -30.85444 -30.21396 -28.24739 -27.42217 -24.19575 -22.77919 -22.22635 -20.46590 -19.26608 -18.70466 -17.78582 -17.41746 -17.27143 -17.15653 -16.61229 -16.20798 -16.02634 -15.88520 -15.17954 -14.64227 -14.03863 -13.97026 -13.92191 -13.80592 -13.65788 -13.27918 -13.19269 -13.14182 -13.01081 -12.93702 -12.75573 -12.60531 -12.01223 -11.93917 -11.82431 -11.66304 -11.41323 -10.57590 -10.44524 -10.38455 -10.26573 -8.57509 -8.51431 -6.57922 -0.66631 0.41567 1.19158 1.20775 1.42132 1.58676 1.61748 1.87788 2.18640 2.44146 2.51893 2.93222 3.30441 3.33501 3.59698 3.93945 4.09878 4.10701 4.24490 4.43313 4.47859 4.59108 4.64454 4.73405 4.88983 4.95415 4.99422 5.05086 5.31827 5.56447 6.00831 6.04345 6.22350 6.75621 6.92431 8.40084 8.63729 Molecular weight = 306.06amu Principal moments of inertia in cm(-1) A = 0.036386 B = 0.002713 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.336112 B =10318.025808 C =10862.966332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.522 5.522 3 C 0.319 3.681 4 C -0.473 4.473 5 H 0.104 0.896 6 C 0.030 3.970 7 N -0.790 5.790 8 Si 1.006 2.994 9 H -0.259 1.259 10 H -0.248 1.248 11 H -0.273 1.273 12 N -0.393 5.393 13 N -0.330 5.330 14 C 0.051 3.949 15 S 0.016 5.984 16 C -0.108 4.108 17 C 0.134 3.866 18 N -1.118 6.118 19 S 2.623 3.377 20 C -0.648 4.648 21 O -1.002 7.002 22 O -1.001 7.001 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.285 0.715 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.423 0.577 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 -16.840 -3.596 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.223 5.223 3 C 0.073 3.927 4 C -0.513 4.513 5 H 0.122 0.878 6 C -0.191 4.191 7 N -0.415 5.415 8 Si 0.825 3.175 9 H -0.184 1.184 10 H -0.171 1.171 11 H -0.198 1.198 12 N -0.239 5.239 13 N -0.174 5.174 14 C -0.323 4.323 15 S 0.241 5.759 16 C -0.259 4.259 17 C 0.006 3.994 18 N -0.878 5.878 19 S 2.720 3.280 20 C -0.802 4.802 21 O -0.992 6.992 22 O -0.991 6.991 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.258 0.742 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.680 -17.772 -2.801 19.191 hybrid contribution 0.187 1.892 -0.494 1.964 sum -6.493 -15.880 -3.295 17.470 Atomic orbital electron populations 1.21872 0.75139 1.04536 1.03446 1.46392 1.08172 1.04393 1.63356 1.22026 0.85107 0.89955 0.95654 1.18615 0.96566 0.86537 1.49606 0.87837 1.26976 0.93831 1.06481 0.91763 1.70132 1.03344 1.37090 1.30918 0.84852 0.79253 0.73799 0.79629 1.18376 1.17113 1.19757 1.75278 1.17509 0.99364 1.31786 1.74390 1.17278 1.07003 1.18767 1.26467 0.91060 0.95754 1.18979 1.83942 1.10132 0.86856 1.94948 1.23553 0.97605 0.97888 1.06805 1.21062 0.84653 0.88725 1.04935 1.55445 1.14801 1.28500 1.89048 1.04246 0.73828 0.73377 0.76577 1.30303 1.16116 1.15034 1.18770 1.93572 1.33023 1.84212 1.88418 1.93566 1.75845 1.85741 1.43948 0.90647 0.88823 0.89455 0.90515 0.88847 0.90221 0.88976 0.87132 0.74205 0.83125 0.83401 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.08 10.89 127.77 1.39 4.47 16 2 N -0.52 -24.52 3.26 -543.61 -1.77 -26.29 16 3 C 0.32 18.04 7.50 133.23 1.00 19.04 16 4 C -0.47 -25.04 9.05 23.09 0.21 -24.83 16 5 H 0.10 4.83 7.27 -2.92 -0.02 4.81 16 6 C 0.03 1.55 5.49 85.29 0.47 2.02 16 7 N -0.79 -44.61 12.00 21.85 0.26 -44.35 16 8 Si 1.01 37.43 29.57 68.60 2.03 39.45 16 9 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 10 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 11 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 12 N -0.39 -24.37 10.56 -55.01 -0.58 -24.95 16 13 N -0.33 -18.30 11.62 -56.17 -0.65 -18.95 16 14 C 0.05 2.38 8.09 179.18 1.45 3.83 16 15 S 0.02 0.51 21.79 -56.49 -1.23 -0.72 16 16 C -0.11 -2.90 5.37 71.98 0.39 -2.52 16 17 C 0.13 2.31 6.13 86.38 0.53 2.84 16 18 N -1.12 -18.31 5.89 -187.48 -1.10 -19.41 16 19 S 2.62 41.78 6.10 -56.49 -0.34 41.44 16 20 C -0.65 -3.35 10.89 113.37 1.23 -2.11 16 21 O -1.00 -24.12 18.08 -127.65 -2.31 -26.43 16 22 O -1.00 -24.25 17.50 -127.65 -2.23 -26.48 16 23 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 24 H 0.09 2.57 7.85 -2.39 -0.02 2.55 16 25 H 0.09 2.73 7.48 -2.39 -0.02 2.72 16 26 H 0.28 14.51 8.30 -92.71 -0.77 13.74 16 27 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.08 2.51 8.14 -2.40 -0.02 2.49 16 29 H 0.09 1.57 7.69 -2.39 -0.02 1.56 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.42 6.95 8.62 -96.74 -0.83 6.12 16 32 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -87.76 325.27 -0.96 -88.72 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.31 Total: 15.24 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.67 Total: 2.72 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -3.85 Total: -133.94 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -4.54 Total: -52.91 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.45 kcal Atomic # 16 Polarization: 42.29 SS G_CDS: -1.58 Total: 40.71 kcal Total: -87.76 -0.96 -88.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321100546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.933 kcal (2) G-P(sol) polarization free energy of solvation -87.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds