Wall clock time and date at job start Fri Apr 10 2020 17:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46499 * 120.00139 * 2 1 4 4 C 1.50699 * 109.46997 * 275.00310 * 3 2 1 5 5 H 1.08004 * 120.00090 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00360 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00580 * 179.97438 * 6 4 3 8 8 Si 1.86807 * 119.99654 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47343 * 89.99967 * 8 6 4 10 10 H 1.48502 * 109.47211 * 210.00085 * 8 6 4 11 11 H 1.48499 * 109.46985 * 329.99831 * 8 6 4 12 12 S 1.65600 * 119.99686 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40003 * 156.45661 * 12 2 1 14 14 O 1.42103 * 106.40333 * 23.53616 * 12 2 1 15 15 N 1.65606 * 107.21514 * 269.99619 * 12 2 1 16 16 N 1.40101 * 119.99810 * 65.00630 * 15 12 2 17 17 C 1.47317 * 126.68438 * 269.97628 * 16 15 12 18 18 C 1.51581 * 103.58722 * 179.84370 * 17 16 15 19 19 O 1.21243 * 127.15351 * 180.24592 * 18 17 16 20 20 N 1.34766 * 105.69005 * 0.31936 * 18 17 16 21 21 C 1.46499 * 124.17994 * 179.97438 * 20 18 17 22 22 C 1.33791 * 111.64117 * 359.66261 * 20 18 17 23 23 O 1.21540 * 123.76923 * 180.23040 * 22 20 18 24 24 H 1.08996 * 109.46537 * 270.00269 * 1 2 3 25 25 H 1.08998 * 109.46783 * 29.99694 * 1 2 3 26 26 H 1.08992 * 109.47132 * 150.00108 * 1 2 3 27 27 H 1.08995 * 109.47135 * 34.99917 * 3 2 1 28 28 H 1.08996 * 109.46833 * 155.00265 * 3 2 1 29 29 H 0.97000 * 119.99863 * 180.02562 * 7 6 4 30 30 H 0.96998 * 119.99618 * 244.99739 * 15 12 2 31 31 H 1.09003 * 110.59914 * 298.56199 * 17 16 15 32 32 H 1.08994 * 110.60091 * 61.51047 * 17 16 15 33 33 H 1.09002 * 109.47391 * 269.70277 * 21 20 18 34 34 H 1.09001 * 109.46813 * 149.70333 * 21 20 18 35 35 H 1.09004 * 109.47041 * 29.70461 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2332 6 6 3.0007 2.9503 -1.6665 7 7 3.1267 3.3837 -2.9018 8 14 3.7149 3.9397 -0.2521 9 1 5.1118 3.5041 0.0010 10 1 3.7021 5.3830 -0.6014 11 1 2.8986 3.7186 0.9685 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4113 -2.4063 -0.5454 15 7 2.5382 -1.8593 1.5810 16 7 1.4446 -2.1649 2.4018 17 6 0.6790 -1.2217 3.2351 18 6 -0.3722 -2.0965 3.8889 19 8 -1.2373 -1.7471 4.6632 20 7 -0.1442 -3.3436 3.4319 21 6 -0.9352 -4.5168 3.8116 22 6 0.8896 -3.3768 2.5833 23 8 1.2833 -4.3888 2.0373 24 1 -0.3632 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 1.6503 2.0042 0.5894 28 1 3.1858 1.1176 0.4343 29 1 3.5908 4.2170 -3.0784 30 1 3.4389 -1.8969 1.9391 31 1 1.3226 -0.7640 3.9864 32 1 0.2075 -0.4585 2.6161 33 1 -0.4930 -4.9839 4.6916 34 1 -0.9450 -5.2305 2.9877 35 1 -1.9561 -4.2090 4.0379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338057018.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:17 Heat of formation + Delta-G solvation = -58.957040 kcal Electronic energy + Delta-G solvation = -24417.165600 eV Core-core repulsion = 20580.726959 eV Total energy + Delta-G solvation = -3836.438641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.088 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.56266 -38.94563 -37.00661 -36.68284 -35.90487 -35.87367 -35.51392 -32.50880 -32.31602 -28.59104 -27.67356 -27.44017 -25.39841 -23.11122 -22.10562 -21.18060 -19.61087 -18.70180 -17.87137 -17.26829 -17.14446 -17.06862 -16.67183 -16.36885 -15.73730 -15.45689 -14.65183 -14.45518 -14.31186 -14.23550 -13.92096 -13.40326 -13.00406 -12.91641 -12.77378 -12.51552 -12.23974 -11.97876 -11.74333 -11.58132 -11.49917 -11.40293 -10.87631 -10.69384 -10.60873 -10.39871 -10.21397 -10.14126 -9.66398 -9.57764 -8.69221 -8.37414 -6.17374 -4.18488 0.40497 1.26621 1.45962 2.31975 2.68979 3.19471 3.23305 3.27320 3.45127 3.65821 3.82874 4.28974 4.45294 4.61557 4.71820 4.83604 4.98814 5.11140 5.15265 5.24957 5.33771 5.38239 5.70519 5.77500 6.03695 6.26949 6.52373 6.65855 6.71359 6.88129 7.00130 7.15458 7.44634 7.86813 8.37540 8.86918 9.40280 10.95920 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.004868 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.288766 B = 5750.394911 C = 6308.169731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.982 5.982 3 C 0.224 3.776 4 C -0.538 4.538 5 H 0.079 0.921 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.265 1.265 12 S 2.771 3.229 13 O -0.934 6.934 14 O -0.964 6.964 15 N -0.874 5.874 16 N -0.415 5.415 17 C 0.053 3.947 18 C 0.533 3.467 19 O -0.464 6.464 20 N -0.573 5.573 21 C 0.088 3.912 22 C 0.704 3.296 23 O -0.514 6.514 24 H 0.037 0.963 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.266 0.734 30 H 0.420 0.580 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.550 -9.783 16.421 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.826 5.826 3 C 0.101 3.899 4 C -0.577 4.577 5 H 0.097 0.903 6 C -0.128 4.128 7 N -0.529 5.529 8 Si 0.699 3.301 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.189 1.189 12 S 2.776 3.224 13 O -0.916 6.916 14 O -0.947 6.947 15 N -0.721 5.721 16 N -0.247 5.247 17 C -0.073 4.073 18 C 0.319 3.681 19 O -0.333 6.333 20 N -0.321 5.321 21 C -0.053 4.053 22 C 0.405 3.595 23 O -0.384 6.384 24 H 0.055 0.945 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.257 0.743 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.543 -10.545 15.520 19.872 hybrid contribution 0.892 0.965 1.089 1.706 sum -5.651 -9.580 16.609 19.990 Atomic orbital electron populations 1.21504 0.79362 1.04649 0.99967 1.57432 1.14716 1.22519 1.87889 1.19542 0.90856 0.80403 0.99061 1.21329 1.37362 1.07300 0.91662 0.90296 1.24871 0.95260 0.97142 0.95573 1.69887 1.42111 1.22003 1.18904 0.86924 0.80389 0.79887 0.82895 1.19744 1.20873 1.18928 1.02880 0.74137 0.73154 0.72187 1.93730 1.40647 1.84801 1.72398 1.93592 1.66866 1.59308 1.74938 1.56617 1.05093 1.85264 1.25166 1.45250 1.26177 1.07194 1.46115 1.23056 0.93443 0.94371 0.96403 1.20644 0.84561 0.82670 0.80211 1.90845 1.33027 1.77401 1.32012 1.46240 1.31173 1.11670 1.43046 1.21910 0.95354 0.85681 1.02324 1.15827 0.79998 0.83863 0.79803 1.91025 1.64708 1.32081 1.50577 0.94501 0.89329 0.90957 0.94435 0.95137 0.92367 0.74279 0.84924 0.84817 0.90688 0.88849 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 10.68 59.85 0.64 2.00 16 2 N -0.98 -17.84 3.23 -123.06 -0.40 -18.23 16 3 C 0.22 4.76 4.15 -5.19 -0.02 4.74 16 4 C -0.54 -14.45 9.94 -34.44 -0.34 -14.79 16 5 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 6 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 8 Si 0.87 19.84 27.47 -169.99 -4.67 15.17 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.26 -5.45 6.54 56.52 0.37 -5.08 16 12 S 2.77 50.94 6.32 -107.50 -0.68 50.26 16 13 O -0.93 -20.43 17.11 -57.17 -0.98 -21.40 16 14 O -0.96 -19.83 16.70 -57.17 -0.95 -20.78 16 15 N -0.87 -11.90 6.91 60.35 0.42 -11.48 16 16 N -0.41 -5.08 3.79 -65.74 -0.25 -5.33 16 17 C 0.05 0.47 7.88 -4.31 -0.03 0.43 16 18 C 0.53 5.19 8.31 -10.56 -0.09 5.10 16 19 O -0.46 -5.33 17.75 5.59 0.10 -5.23 16 20 N -0.57 -5.93 3.00 -128.16 -0.39 -6.32 16 21 C 0.09 0.65 10.73 59.85 0.64 1.29 16 22 C 0.70 9.49 8.45 -88.02 -0.74 8.75 16 23 O -0.51 -8.76 17.43 5.33 0.09 -8.67 16 24 H 0.04 0.41 5.69 -51.93 -0.30 0.11 16 25 H 0.09 1.35 8.07 -51.93 -0.42 0.94 16 26 H 0.07 1.08 7.02 -51.93 -0.36 0.72 16 27 H 0.04 0.74 7.17 -51.93 -0.37 0.36 16 28 H 0.03 0.64 7.04 -51.93 -0.37 0.27 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.42 4.58 8.96 -176.25 -1.58 3.00 16 31 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.13 1.08 5.68 -51.93 -0.30 0.79 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.70 7.86 -51.93 -0.41 0.30 16 35 H 0.09 0.55 8.00 -51.93 -0.42 0.13 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -37.22 318.16 -7.13 -44.35 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.95 Total: -0.94 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.05 Total: 9.49 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: 0.16 Total: -67.05 kcal Atomic # 8 Polarization: -54.35 SS G_CDS: -1.74 Total: -56.09 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Atomic # 16 Polarization: 50.94 SS G_CDS: -0.68 Total: 50.26 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -37.22 -7.13 -44.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338057018.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.607 kcal (2) G-P(sol) polarization free energy of solvation -37.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds