Wall clock time and date at job start Fri Apr 10 2020 17:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46499 * 120.00139 * 2 1 4 4 C 1.50699 * 109.46997 * 275.00310 * 3 2 1 5 5 H 1.08004 * 120.00090 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00360 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00580 * 179.97438 * 6 4 3 8 8 Si 1.86807 * 119.99654 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47343 * 89.99967 * 8 6 4 10 10 H 1.48502 * 109.47211 * 210.00085 * 8 6 4 11 11 H 1.48499 * 109.46985 * 329.99831 * 8 6 4 12 12 S 1.65600 * 119.99686 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40003 * 156.45661 * 12 2 1 14 14 O 1.42103 * 106.40333 * 23.53616 * 12 2 1 15 15 N 1.65606 * 107.21514 * 269.99619 * 12 2 1 16 16 N 1.40101 * 119.99810 * 65.00630 * 15 12 2 17 17 C 1.47317 * 126.68438 * 269.97628 * 16 15 12 18 18 C 1.51581 * 103.58722 * 179.84370 * 17 16 15 19 19 O 1.21243 * 127.15351 * 180.24592 * 18 17 16 20 20 N 1.34766 * 105.69005 * 0.31936 * 18 17 16 21 21 C 1.46499 * 124.17994 * 179.97438 * 20 18 17 22 22 C 1.33791 * 111.64117 * 359.66261 * 20 18 17 23 23 O 1.21540 * 123.76923 * 180.23040 * 22 20 18 24 24 H 1.08996 * 109.46537 * 270.00269 * 1 2 3 25 25 H 1.08998 * 109.46783 * 29.99694 * 1 2 3 26 26 H 1.08992 * 109.47132 * 150.00108 * 1 2 3 27 27 H 1.08995 * 109.47135 * 34.99917 * 3 2 1 28 28 H 1.08996 * 109.46833 * 155.00265 * 3 2 1 29 29 H 0.97000 * 119.99863 * 180.02562 * 7 6 4 30 30 H 0.96998 * 119.99618 * 244.99739 * 15 12 2 31 31 H 1.09003 * 110.59914 * 298.56199 * 17 16 15 32 32 H 1.08994 * 110.60091 * 61.51047 * 17 16 15 33 33 H 1.09002 * 109.47391 * 269.70277 * 21 20 18 34 34 H 1.09001 * 109.46813 * 149.70333 * 21 20 18 35 35 H 1.09004 * 109.47041 * 29.70461 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2332 6 6 3.0007 2.9503 -1.6665 7 7 3.1267 3.3837 -2.9018 8 14 3.7149 3.9397 -0.2521 9 1 5.1118 3.5041 0.0010 10 1 3.7021 5.3830 -0.6014 11 1 2.8986 3.7186 0.9685 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4113 -2.4063 -0.5454 15 7 2.5382 -1.8593 1.5810 16 7 1.4446 -2.1649 2.4018 17 6 0.6790 -1.2217 3.2351 18 6 -0.3722 -2.0965 3.8889 19 8 -1.2373 -1.7471 4.6632 20 7 -0.1442 -3.3436 3.4319 21 6 -0.9352 -4.5168 3.8116 22 6 0.8896 -3.3768 2.5833 23 8 1.2833 -4.3888 2.0373 24 1 -0.3632 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 1.6503 2.0042 0.5894 28 1 3.1858 1.1176 0.4343 29 1 3.5908 4.2170 -3.0784 30 1 3.4389 -1.8969 1.9391 31 1 1.3226 -0.7640 3.9864 32 1 0.2075 -0.4585 2.6161 33 1 -0.4930 -4.9839 4.6916 34 1 -0.9450 -5.2305 2.9877 35 1 -1.9561 -4.2090 4.0379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338057018.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:10 Heat of formation + Delta-G solvation = -91.230818 kcal Electronic energy + Delta-G solvation = -24418.565096 eV Core-core repulsion = 20580.726959 eV Total energy + Delta-G solvation = -3837.838137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.088 amu Computer time = 6.38 seconds Orbital eigenvalues (eV) -43.44617 -39.86717 -38.54226 -37.78360 -37.37980 -37.09234 -36.83221 -34.49942 -33.25725 -30.31108 -28.57342 -28.15264 -26.88812 -23.99456 -23.89059 -22.10645 -20.86782 -19.70171 -19.31723 -18.92166 -18.46601 -18.02216 -17.95470 -17.37335 -16.91377 -16.65483 -16.16738 -15.56382 -15.40822 -15.27606 -15.03673 -14.63494 -14.49806 -14.19233 -13.86531 -13.62499 -13.54377 -13.47471 -13.35360 -13.10585 -13.03842 -12.70095 -12.41501 -12.27886 -11.96836 -11.67205 -11.55521 -11.36881 -10.99256 -10.74748 -10.52743 -9.89804 -8.25079 -6.32312 -0.93968 0.37022 0.46512 1.42339 1.46692 1.48492 1.55138 1.74158 2.14609 2.40075 2.48951 2.87217 3.09495 3.28433 3.73226 3.95197 4.00545 4.21498 4.41754 4.46783 4.50294 4.65799 4.66766 4.77042 4.84458 4.92178 5.05260 5.28097 5.49400 5.60306 5.79810 5.82029 6.21893 6.31508 6.72239 6.87591 7.31219 8.92429 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.004868 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.288766 B = 5750.394911 C = 6308.169731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.985 5.985 3 C 0.229 3.771 4 C -0.547 4.547 5 H 0.026 0.974 6 C 0.005 3.995 7 N -0.951 5.951 8 Si 0.944 3.056 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.216 1.216 12 S 2.790 3.210 13 O -0.977 6.977 14 O -0.993 6.993 15 N -0.862 5.862 16 N -0.415 5.415 17 C 0.053 3.947 18 C 0.542 3.458 19 O -0.477 6.477 20 N -0.570 5.570 21 C 0.080 3.920 22 C 0.700 3.300 23 O -0.559 6.559 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.267 0.733 30 H 0.436 0.564 31 H 0.173 0.827 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.076 -8.960 20.258 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.828 5.828 3 C 0.105 3.895 4 C -0.586 4.586 5 H 0.044 0.956 6 C -0.192 4.192 7 N -0.591 5.591 8 Si 0.766 3.234 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.139 1.139 12 S 2.795 3.205 13 O -0.959 6.959 14 O -0.976 6.976 15 N -0.715 5.715 16 N -0.248 5.248 17 C -0.071 4.071 18 C 0.330 3.670 19 O -0.347 6.347 20 N -0.317 5.317 21 C -0.060 4.060 22 C 0.401 3.599 23 O -0.432 6.432 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.277 0.723 31 H 0.190 0.810 32 H 0.166 0.834 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.108 -9.733 19.400 22.838 hybrid contribution 0.954 0.592 -0.141 1.131 sum -6.154 -9.141 19.258 22.188 Atomic orbital electron populations 1.21743 0.77503 1.04053 1.02889 1.57274 1.15932 1.21235 1.88403 1.19409 0.92459 0.81979 0.95623 1.21716 1.36472 1.06869 0.93557 0.95560 1.25984 0.95765 0.98694 0.98786 1.70084 1.44016 1.22911 1.22113 0.85786 0.79942 0.77277 0.80423 1.19520 1.21197 1.13851 1.02026 0.72850 0.72852 0.72737 1.93669 1.42583 1.85320 1.74319 1.93554 1.67433 1.60231 1.76370 1.55764 1.06417 1.84668 1.24601 1.45431 1.25920 1.07880 1.45534 1.23397 0.93367 0.93479 0.96839 1.20674 0.84309 0.82317 0.79714 1.90860 1.33686 1.77427 1.32751 1.46329 1.30332 1.12858 1.42194 1.22167 0.96013 0.85010 1.02792 1.16077 0.80370 0.83669 0.79790 1.90998 1.66048 1.33728 1.52385 0.89741 0.90028 0.91619 0.91111 0.93823 0.92444 0.72251 0.80960 0.83442 0.88958 0.89437 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.29 10.68 127.77 1.36 3.66 16 2 N -0.99 -34.04 3.23 -543.24 -1.75 -35.79 16 3 C 0.23 9.16 4.15 85.63 0.36 9.51 16 4 C -0.55 -29.70 9.94 25.60 0.25 -29.45 16 5 H 0.03 1.64 8.06 -2.91 -0.02 1.62 16 6 C 0.01 0.30 5.47 84.65 0.46 0.76 16 7 N -0.95 -58.38 13.96 21.45 0.30 -58.08 16 8 Si 0.94 39.40 27.47 68.60 1.88 41.29 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.22 -7.33 6.54 99.48 0.65 -6.67 16 12 S 2.79 100.53 6.32 -56.49 -0.36 100.17 16 13 O -0.98 -42.98 17.11 -128.00 -2.19 -45.17 16 14 O -0.99 -41.00 16.70 -128.00 -2.14 -43.14 16 15 N -0.86 -21.53 6.91 37.02 0.26 -21.28 16 16 N -0.41 -8.94 3.79 -480.31 -1.82 -10.76 16 17 C 0.05 0.69 7.88 85.76 0.68 1.36 16 18 C 0.54 8.60 8.31 87.94 0.73 9.33 16 19 O -0.48 -9.26 17.75 -2.92 -0.05 -9.31 16 20 N -0.57 -10.38 3.00 -796.64 -2.39 -12.78 16 21 C 0.08 1.02 10.73 127.77 1.37 2.39 16 22 C 0.70 17.57 8.45 179.44 1.52 19.09 16 23 O -0.56 -18.75 17.43 -3.84 -0.07 -18.82 16 24 H 0.08 1.51 5.69 -2.39 -0.01 1.50 16 25 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 26 H 0.07 1.90 7.02 -2.39 -0.02 1.89 16 27 H 0.07 2.41 7.17 -2.39 -0.02 2.40 16 28 H 0.04 1.66 7.04 -2.39 -0.02 1.65 16 29 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.44 8.46 8.96 -217.36 -1.95 6.52 16 31 H 0.17 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.15 1.58 5.68 -2.39 -0.01 1.56 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 1.24 7.86 -2.39 -0.02 1.22 16 35 H 0.11 1.03 8.00 -2.38 -0.02 1.01 16 Total: -1.00 -84.98 318.16 -2.45 -87.43 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -0.85 Total: 9.58 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 6.73 Total: 16.66 kcal Atomic # 7 Polarization: -133.28 SS G_CDS: -5.41 Total: -138.69 kcal Atomic # 8 Polarization: -112.00 SS G_CDS: -4.45 Total: -116.44 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.88 Total: 41.29 kcal Atomic # 16 Polarization: 100.53 SS G_CDS: -0.36 Total: 100.17 kcal Total: -84.98 -2.45 -87.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338057018.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.798 kcal (2) G-P(sol) polarization free energy of solvation -84.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.38 seconds