Wall clock time and date at job start Fri Apr 10 2020 17:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30292 * 126.34944 * 2 1 4 4 N 1.28527 * 110.05459 * 180.30764 * 3 2 1 5 5 C 1.31221 * 109.85975 * 359.72397 * 4 3 2 6 6 N 1.38576 * 126.47308 * 179.97438 * 5 4 3 7 7 C 1.46906 * 111.00358 * 307.22627 * 6 5 4 8 8 C 1.46896 * 111.00294 * 71.18593 * 6 5 4 9 9 H 1.09005 * 109.47188 * 54.99455 * 8 6 5 10 10 C 1.53000 * 109.46656 * 294.99733 * 8 6 5 11 11 C 1.50695 * 109.47784 * 174.99936 * 8 6 5 12 12 H 1.08007 * 119.99854 * 5.45859 * 11 8 6 13 13 C 1.37871 * 120.00186 * 185.45977 * 11 8 6 14 14 N 1.31510 * 120.00356 * 9.77053 * 13 11 8 15 15 Si 1.86806 * 120.00101 * 189.76827 * 13 11 8 16 16 H 1.48500 * 109.46751 * 94.98860 * 15 13 11 17 17 H 1.48494 * 109.47206 * 214.99365 * 15 13 11 18 18 H 1.48506 * 109.47083 * 334.99442 * 15 13 11 19 19 N 1.36457 * 107.05429 * 359.97438 * 5 4 3 20 20 C 1.46494 * 127.13663 * 179.97438 * 19 5 4 21 21 C 1.52996 * 109.46983 * 85.52464 * 20 19 5 22 22 N 1.46509 * 109.47254 * 179.97438 * 21 20 19 23 23 C 1.34424 * 126.82411 * 124.99516 * 22 21 20 24 24 N 1.30825 * 108.07730 * 180.02562 * 23 22 21 25 25 C 1.33242 * 109.83288 * 359.97438 * 24 23 22 26 26 N 1.30714 * 108.94323 * 0.27028 * 25 24 23 27 27 H 1.08990 * 109.47437 * 270.15271 * 1 2 3 28 28 H 1.08999 * 109.46959 * 30.15098 * 1 2 3 29 29 H 1.08999 * 109.46878 * 150.14781 * 1 2 3 30 30 H 1.09003 * 109.46410 * 62.36282 * 7 6 5 31 31 H 1.09000 * 109.46901 * 182.35938 * 7 6 5 32 32 H 1.08999 * 109.47001 * 302.36364 * 7 6 5 33 33 H 1.08998 * 109.47408 * 302.77707 * 10 8 6 34 34 H 1.09004 * 109.47232 * 62.77813 * 10 8 6 35 35 H 1.09002 * 109.47503 * 182.77289 * 10 8 6 36 36 H 0.96998 * 120.00030 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.47301 * 325.52177 * 20 19 5 38 38 H 1.09006 * 109.47199 * 205.52165 * 20 19 5 39 39 H 1.09000 * 109.47336 * 59.99734 * 21 20 19 40 40 H 1.08999 * 109.46931 * 299.99515 * 21 20 19 41 41 H 1.08002 * 125.96196 * 359.97438 * 23 22 21 42 42 H 1.07995 * 125.53276 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6888 -0.0065 5 6 3.5945 -0.6209 -0.0051 6 7 4.7579 -1.3738 -0.0111 7 6 5.6440 -0.9649 -1.1091 8 6 5.4481 -1.2866 1.2827 9 1 4.7638 -1.5771 2.0799 10 6 5.9192 0.1507 1.5134 11 6 6.6382 -2.2110 1.2806 12 1 6.9117 -2.7372 0.3779 13 6 7.3780 -2.3851 2.4309 14 7 6.9407 -1.9022 3.5733 15 14 9.0014 -3.3071 2.3669 16 1 10.1161 -2.3369 2.2199 17 1 9.1809 -4.0811 3.6214 18 1 8.9978 -4.2360 1.2083 19 7 2.3174 -1.1014 0.0035 20 6 1.9009 -2.5059 0.0076 21 6 1.8729 -3.0253 1.4464 22 7 1.4558 -4.4298 1.4506 23 6 2.1185 -5.4654 1.9939 24 7 1.4175 -6.5502 1.7856 25 6 0.3058 -6.2484 1.1161 26 7 0.2867 -4.9623 0.8830 27 1 -0.3634 0.0027 1.0275 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3633 -0.8913 -0.5115 30 1 5.9420 0.0741 -0.9677 31 1 6.5303 -1.5994 -1.1162 32 1 5.1171 -1.0659 -2.0580 33 1 6.5644 0.4582 0.6905 34 1 5.0548 0.8127 1.5643 35 1 6.4741 0.2053 2.4501 36 1 7.4614 -2.0244 4.3826 37 1 2.6061 -3.0957 -0.5780 38 1 0.9057 -2.5911 -0.4289 39 1 1.1677 -2.4355 2.0320 40 1 2.8681 -2.9402 1.8828 41 1 3.0650 -5.4115 2.5113 42 1 -0.4542 -6.9526 0.8115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411680581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:36 Heat of formation + Delta-G solvation = 191.690001 kcal Electronic energy + Delta-G solvation = -25815.810261 eV Core-core repulsion = 22256.474142 eV Total energy + Delta-G solvation = -3559.336119 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.68643 -42.07461 -37.38444 -36.16723 -33.50815 -33.03034 -31.54512 -31.25504 -29.31327 -28.80208 -27.19134 -25.49690 -25.20538 -24.57243 -22.04258 -21.78121 -21.55464 -20.55820 -19.54070 -17.67503 -16.61479 -16.45245 -16.03114 -15.73483 -15.45159 -14.97408 -14.69427 -14.56138 -14.16172 -13.83662 -13.71940 -13.32919 -13.21718 -12.82304 -12.53346 -12.39062 -12.25021 -11.68786 -11.55318 -11.39416 -11.27660 -11.02751 -10.95076 -10.66991 -10.37027 -10.25596 -10.17956 -10.08336 -10.04612 -9.84856 -9.64157 -9.08851 -8.58187 -8.53654 -7.85542 -6.23014 -4.25080 1.53025 1.92364 2.09461 2.67642 2.92060 3.19567 3.20840 3.29340 3.31266 4.17201 4.26714 4.33770 4.46913 4.51137 4.53692 4.77950 4.93172 4.97525 5.06342 5.12479 5.34474 5.39222 5.51845 5.61935 5.74169 5.86924 6.06669 6.12530 6.25575 6.31911 6.33994 6.47331 6.67754 6.68674 6.85279 6.88298 6.96302 7.34208 7.43136 7.63914 7.74333 8.00468 8.00944 8.31710 8.78064 9.11138 9.39378 10.86418 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.006133 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.094317 B = 4564.274032 C = 6791.101460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.160 3.840 3 N -0.291 5.291 4 N -0.311 5.311 5 C 0.376 3.624 6 N -0.470 5.470 7 C 0.045 3.955 8 C 0.225 3.775 9 H 0.041 0.959 10 C -0.167 4.167 11 C -0.512 4.512 12 H 0.067 0.933 13 C 0.067 3.933 14 N -0.887 5.887 15 Si 0.895 3.105 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 N -0.473 5.473 20 C 0.113 3.887 21 C 0.118 3.882 22 N -0.375 5.375 23 C 0.273 3.727 24 N -0.551 5.551 25 C 0.198 3.802 26 N -0.328 5.328 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.264 0.736 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.224 0.776 42 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 -3.749 -5.100 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.132 5.132 4 N -0.154 5.154 5 C 0.020 3.980 6 N -0.197 5.197 7 C -0.102 4.102 8 C 0.120 3.880 9 H 0.059 0.941 10 C -0.227 4.227 11 C -0.551 4.551 12 H 0.085 0.915 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.723 3.277 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 N -0.169 5.169 20 C -0.012 4.012 21 C -0.006 4.006 22 N -0.165 5.165 23 C -0.024 4.024 24 N -0.278 5.278 25 C -0.105 4.105 26 N -0.156 5.156 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.141 0.859 41 H 0.240 0.760 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -12.349 -2.658 -5.255 13.681 hybrid contribution 1.026 -0.987 0.395 1.477 sum -11.323 -3.645 -4.860 12.850 Atomic orbital electron populations 1.20134 0.84120 1.04053 1.03658 1.24710 0.96384 0.82714 1.06935 1.73981 0.97048 1.24164 1.17990 1.74773 1.11082 1.08689 1.20835 1.22989 0.86153 0.88456 1.00384 1.59469 1.02266 1.48921 1.09025 1.22252 0.96568 1.00774 0.90648 1.19416 0.93206 0.93587 0.81783 0.94117 1.22374 1.00217 0.98084 1.01996 1.20972 1.10746 1.26269 0.97075 0.91522 1.24884 0.98014 0.95652 0.95019 1.69960 1.37774 1.45986 0.98718 0.86528 0.83878 0.79680 0.77649 1.20593 1.21206 1.19698 1.46223 1.06775 1.07308 1.56574 1.21817 1.03258 0.79144 0.96959 1.22162 1.03477 0.76785 0.98144 1.50352 1.15887 1.08622 1.41671 1.26323 0.98904 0.81962 0.95193 1.70602 1.06786 1.28378 1.22025 1.25984 0.96447 0.91840 0.96223 1.77960 1.03890 1.11706 1.22044 0.90032 0.88948 0.90742 0.93771 0.89271 0.93739 0.94443 0.94662 0.91223 0.92671 0.87564 0.87988 0.89015 0.85942 0.75968 0.76820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.25 36.01 0.37 -0.23 16 2 C 0.16 2.43 8.07 -154.01 -1.24 1.19 16 3 N -0.29 -5.55 12.18 32.99 0.40 -5.15 16 4 N -0.31 -6.49 9.94 30.31 0.30 -6.19 16 5 C 0.38 7.20 6.19 -318.87 -1.98 5.22 16 6 N -0.47 -9.37 4.77 -176.08 -0.84 -10.21 16 7 C 0.05 0.84 8.71 60.07 0.52 1.36 16 8 C 0.22 5.16 2.18 -68.87 -0.15 5.01 16 9 H 0.04 1.03 7.84 -51.93 -0.41 0.62 16 10 C -0.17 -3.96 8.28 37.16 0.31 -3.65 16 11 C -0.51 -12.55 7.95 -34.44 -0.27 -12.83 16 12 H 0.07 1.62 6.57 -52.48 -0.34 1.27 16 13 C 0.07 1.70 5.18 -17.82 -0.09 1.61 16 14 N -0.89 -23.49 12.17 55.43 0.67 -22.81 16 15 Si 0.90 19.78 29.55 -169.99 -5.02 14.75 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 17 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 N -0.47 -7.37 2.81 -114.09 -0.32 -7.69 16 20 C 0.11 1.41 6.27 -4.05 -0.03 1.39 16 21 C 0.12 1.44 6.87 -4.04 -0.03 1.41 16 22 N -0.37 -4.66 3.69 -62.63 -0.23 -4.89 16 23 C 0.27 3.40 12.63 -90.66 -1.14 2.25 16 24 N -0.55 -7.31 11.19 -15.83 -0.18 -7.49 16 25 C 0.20 2.29 13.03 -91.81 -1.20 1.10 16 26 N -0.33 -4.12 12.57 29.29 0.37 -3.75 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.59 7.19 -51.93 -0.37 0.22 16 30 H 0.04 0.86 6.23 -51.93 -0.32 0.54 16 31 H 0.09 1.66 6.38 -51.93 -0.33 1.33 16 32 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.04 0.85 6.27 -51.93 -0.33 0.53 16 34 H 0.03 0.83 6.14 -51.93 -0.32 0.51 16 35 H 0.07 1.79 6.86 -51.93 -0.36 1.44 16 36 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.10 1.09 7.12 -51.93 -0.37 0.73 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.12 1.71 7.87 -51.93 -0.41 1.30 16 41 H 0.22 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.22 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 349.40 15.07 5.27 5.27 Total: -1.00 -30.92 349.40 -10.16 -41.08 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.65 Total: 3.25 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -4.93 Total: 3.84 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: 0.18 Total: -68.19 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.92 -10.16 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411680581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.773 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds