Wall clock time and date at job start Fri Apr 10 2020 17:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30292 * 126.34944 * 2 1 4 4 N 1.28527 * 110.05459 * 180.30764 * 3 2 1 5 5 C 1.31221 * 109.85975 * 359.72397 * 4 3 2 6 6 N 1.38576 * 126.47308 * 179.97438 * 5 4 3 7 7 C 1.46906 * 111.00358 * 307.22627 * 6 5 4 8 8 C 1.46896 * 111.00294 * 71.18593 * 6 5 4 9 9 H 1.09005 * 109.47188 * 54.99455 * 8 6 5 10 10 C 1.53000 * 109.46656 * 294.99733 * 8 6 5 11 11 C 1.50695 * 109.47784 * 174.99936 * 8 6 5 12 12 H 1.08007 * 119.99854 * 5.45859 * 11 8 6 13 13 C 1.37871 * 120.00186 * 185.45977 * 11 8 6 14 14 N 1.31510 * 120.00356 * 9.77053 * 13 11 8 15 15 Si 1.86806 * 120.00101 * 189.76827 * 13 11 8 16 16 H 1.48500 * 109.46751 * 94.98860 * 15 13 11 17 17 H 1.48494 * 109.47206 * 214.99365 * 15 13 11 18 18 H 1.48506 * 109.47083 * 334.99442 * 15 13 11 19 19 N 1.36457 * 107.05429 * 359.97438 * 5 4 3 20 20 C 1.46494 * 127.13663 * 179.97438 * 19 5 4 21 21 C 1.52996 * 109.46983 * 85.52464 * 20 19 5 22 22 N 1.46509 * 109.47254 * 179.97438 * 21 20 19 23 23 C 1.34424 * 126.82411 * 124.99516 * 22 21 20 24 24 N 1.30825 * 108.07730 * 180.02562 * 23 22 21 25 25 C 1.33242 * 109.83288 * 359.97438 * 24 23 22 26 26 N 1.30714 * 108.94323 * 0.27028 * 25 24 23 27 27 H 1.08990 * 109.47437 * 270.15271 * 1 2 3 28 28 H 1.08999 * 109.46959 * 30.15098 * 1 2 3 29 29 H 1.08999 * 109.46878 * 150.14781 * 1 2 3 30 30 H 1.09003 * 109.46410 * 62.36282 * 7 6 5 31 31 H 1.09000 * 109.46901 * 182.35938 * 7 6 5 32 32 H 1.08999 * 109.47001 * 302.36364 * 7 6 5 33 33 H 1.08998 * 109.47408 * 302.77707 * 10 8 6 34 34 H 1.09004 * 109.47232 * 62.77813 * 10 8 6 35 35 H 1.09002 * 109.47503 * 182.77289 * 10 8 6 36 36 H 0.96998 * 120.00030 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.47301 * 325.52177 * 20 19 5 38 38 H 1.09006 * 109.47199 * 205.52165 * 20 19 5 39 39 H 1.09000 * 109.47336 * 59.99734 * 21 20 19 40 40 H 1.08999 * 109.46931 * 299.99515 * 21 20 19 41 41 H 1.08002 * 125.96196 * 359.97438 * 23 22 21 42 42 H 1.07995 * 125.53276 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6888 -0.0065 5 6 3.5945 -0.6209 -0.0051 6 7 4.7579 -1.3738 -0.0111 7 6 5.6440 -0.9649 -1.1091 8 6 5.4481 -1.2866 1.2827 9 1 4.7638 -1.5771 2.0799 10 6 5.9192 0.1507 1.5134 11 6 6.6382 -2.2110 1.2806 12 1 6.9117 -2.7372 0.3779 13 6 7.3780 -2.3851 2.4309 14 7 6.9407 -1.9022 3.5733 15 14 9.0014 -3.3071 2.3669 16 1 10.1161 -2.3369 2.2199 17 1 9.1809 -4.0811 3.6214 18 1 8.9978 -4.2360 1.2083 19 7 2.3174 -1.1014 0.0035 20 6 1.9009 -2.5059 0.0076 21 6 1.8729 -3.0253 1.4464 22 7 1.4558 -4.4298 1.4506 23 6 2.1185 -5.4654 1.9939 24 7 1.4175 -6.5502 1.7856 25 6 0.3058 -6.2484 1.1161 26 7 0.2867 -4.9623 0.8830 27 1 -0.3634 0.0027 1.0275 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3633 -0.8913 -0.5115 30 1 5.9420 0.0741 -0.9677 31 1 6.5303 -1.5994 -1.1162 32 1 5.1171 -1.0659 -2.0580 33 1 6.5644 0.4582 0.6905 34 1 5.0548 0.8127 1.5643 35 1 6.4741 0.2053 2.4501 36 1 7.4614 -2.0244 4.3826 37 1 2.6061 -3.0957 -0.5780 38 1 0.9057 -2.5911 -0.4289 39 1 1.1677 -2.4355 2.0320 40 1 2.8681 -2.9402 1.8828 41 1 3.0650 -5.4115 2.5113 42 1 -0.4542 -6.9526 0.8115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411680581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:34 Heat of formation + Delta-G solvation = 176.357973 kcal Electronic energy + Delta-G solvation = -25816.475107 eV Core-core repulsion = 22256.474142 eV Total energy + Delta-G solvation = -3560.000965 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -44.02904 -43.01961 -39.03172 -37.29647 -34.86915 -34.60514 -32.76123 -32.19451 -30.88736 -30.09394 -28.45228 -27.18829 -26.94881 -25.65777 -23.30195 -22.98141 -22.64831 -21.79079 -21.05315 -18.76385 -18.26733 -17.84112 -17.41137 -16.99205 -16.66917 -16.46150 -15.93295 -15.68785 -15.41766 -15.11707 -14.90903 -14.77038 -14.20525 -14.17062 -13.70368 -13.55697 -13.40050 -13.20664 -13.05575 -12.96060 -12.74270 -12.69467 -12.48902 -12.36176 -12.15829 -11.97127 -11.53232 -11.45795 -11.06403 -10.96835 -10.81007 -10.65628 -10.49892 -9.99188 -9.46821 -8.17394 -6.24490 0.53642 0.73494 0.96706 1.45284 1.48496 1.53721 1.57924 1.80390 2.00012 2.42844 2.97623 3.16833 3.25650 3.45321 3.47920 3.51702 3.79053 3.96601 4.08566 4.11546 4.16740 4.32252 4.49347 4.54182 4.63416 4.68881 4.72280 4.89715 4.94442 4.99310 5.02119 5.06088 5.07223 5.21951 5.39101 5.46257 5.55403 5.65525 5.73578 5.81107 5.98478 6.14594 6.60781 6.84188 7.08009 7.43232 7.73264 8.92245 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.006133 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.094317 B = 4564.274032 C = 6791.101460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.183 3.817 3 N -0.333 5.333 4 N -0.344 5.344 5 C 0.356 3.644 6 N -0.464 5.464 7 C 0.049 3.951 8 C 0.237 3.763 9 H 0.015 0.985 10 C -0.151 4.151 11 C -0.516 4.516 12 H 0.070 0.930 13 C 0.025 3.975 14 N -0.917 5.917 15 Si 0.954 3.046 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.263 1.263 19 N -0.468 5.468 20 C 0.119 3.881 21 C 0.128 3.872 22 N -0.378 5.378 23 C 0.266 3.734 24 N -0.572 5.572 25 C 0.199 3.801 26 N -0.339 5.339 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.235 0.765 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.817 -4.981 -6.121 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 N -0.173 5.173 4 N -0.186 5.186 5 C -0.001 4.001 6 N -0.190 5.190 7 C -0.099 4.099 8 C 0.131 3.869 9 H 0.033 0.967 10 C -0.210 4.210 11 C -0.554 4.554 12 H 0.088 0.912 13 C -0.175 4.175 14 N -0.556 5.556 15 Si 0.780 3.220 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.187 1.187 19 N -0.163 5.163 20 C -0.005 4.005 21 C 0.004 3.996 22 N -0.168 5.168 23 C -0.031 4.031 24 N -0.300 5.300 25 C -0.104 4.104 26 N -0.167 5.167 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.049 0.951 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.147 0.853 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.251 0.749 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -13.939 -3.896 -6.299 15.784 hybrid contribution 1.380 -0.606 0.692 1.658 sum -12.558 -4.502 -5.608 14.471 Atomic orbital electron populations 1.20457 0.79967 1.06052 1.05435 1.25744 0.98231 0.81539 1.02966 1.73912 0.96846 1.25899 1.20650 1.74641 1.12588 1.09783 1.21605 1.22878 0.86882 0.88354 1.02028 1.59347 1.02585 1.49267 1.07799 1.22241 0.96674 0.99778 0.91157 1.19066 0.92474 0.92549 0.82785 0.96741 1.22193 0.99534 0.98756 1.00544 1.21198 1.11070 1.26106 0.97027 0.91237 1.25572 1.00711 0.96522 0.94735 1.70073 1.38885 1.47359 0.99242 0.85601 0.80118 0.78558 0.77729 1.20806 1.21233 1.18717 1.46329 1.05579 1.08613 1.55764 1.21940 1.04211 0.77242 0.97121 1.21960 1.02603 0.77076 0.97919 1.50333 1.16098 1.08477 1.41886 1.26647 0.99336 0.81989 0.95131 1.70636 1.07664 1.28795 1.22871 1.26710 0.96466 0.92090 0.95094 1.77932 1.03899 1.12237 1.22592 0.88168 0.87609 0.88064 0.95115 0.89383 0.91673 0.94268 0.95219 0.93794 0.92814 0.88452 0.85302 0.87968 0.88158 0.74852 0.73473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 10.25 71.24 0.73 -0.24 16 2 C 0.18 5.24 8.07 137.64 1.11 6.35 16 3 N -0.33 -12.54 12.18 -49.53 -0.60 -13.15 16 4 N -0.34 -14.48 9.94 -58.00 -0.58 -15.06 16 5 C 0.36 13.62 6.19 260.11 1.61 15.23 16 6 N -0.46 -18.59 4.77 -710.99 -3.39 -21.98 16 7 C 0.05 1.81 8.71 127.69 1.11 2.92 16 8 C 0.24 11.15 2.18 44.17 0.10 11.24 16 9 H 0.01 0.77 7.84 -2.38 -0.02 0.75 16 10 C -0.15 -7.37 8.28 71.98 0.60 -6.77 16 11 C -0.52 -25.44 7.95 25.60 0.20 -25.24 16 12 H 0.07 3.34 6.57 -2.91 -0.02 3.32 16 13 C 0.02 1.26 5.18 84.65 0.44 1.69 16 14 N -0.92 -49.50 12.17 21.44 0.26 -49.23 16 15 Si 0.95 40.50 29.55 68.60 2.03 42.53 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 17 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 19 N -0.47 -13.99 2.81 -514.86 -1.45 -15.44 16 20 C 0.12 2.74 6.27 86.38 0.54 3.28 16 21 C 0.13 2.99 6.87 86.38 0.59 3.58 16 22 N -0.38 -8.86 3.69 -352.06 -1.30 -10.16 16 23 C 0.27 6.38 12.63 180.36 2.28 8.65 16 24 N -0.57 -14.36 11.19 -204.01 -2.28 -16.64 16 25 C 0.20 4.15 13.03 180.76 2.36 6.50 16 26 N -0.34 -7.72 12.57 -61.25 -0.77 -8.49 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.10 1.13 7.19 -2.39 -0.02 1.12 16 30 H 0.03 1.21 6.23 -2.39 -0.01 1.19 16 31 H 0.09 3.24 6.38 -2.39 -0.02 3.23 16 32 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16 33 H 0.04 1.84 6.27 -2.39 -0.01 1.82 16 34 H 0.03 1.44 6.14 -2.39 -0.01 1.43 16 35 H 0.04 2.33 6.86 -2.39 -0.02 2.32 16 36 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 37 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.13 2.32 7.12 -2.38 -0.02 2.30 16 39 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.10 2.84 7.87 -2.39 -0.02 2.82 16 41 H 0.24 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.25 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -67.36 349.40 4.62 -62.74 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 1.04 Total: 17.67 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 11.67 Total: 27.22 kcal Atomic # 7 Polarization: -140.04 SS G_CDS: -10.11 Total: -150.15 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -67.36 4.62 -62.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411680581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.095 kcal (2) G-P(sol) polarization free energy of solvation -67.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds