Wall clock time and date at job start Fri Apr 10 2020 17:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38285 * 127.15247 * 2 1 4 4 C 1.39776 * 126.56337 * 359.70091 * 3 2 1 5 5 H 1.07997 * 120.00402 * 0.02562 * 4 3 2 6 6 C 1.40093 * 119.99696 * 179.97438 * 4 3 2 7 7 N 1.30806 * 119.99717 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99876 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47077 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47192 * 120.00237 * 8 6 4 11 11 H 1.48500 * 109.46895 * 239.99932 * 8 6 4 12 12 N 1.33116 * 106.86203 * 179.73829 * 3 2 1 13 13 N 1.28516 * 109.73741 * 359.97438 * 12 3 2 14 14 C 1.32307 * 110.20130 * 0.02562 * 13 12 3 15 15 S 1.76200 * 126.24674 * 180.02562 * 14 13 12 16 16 C 1.76193 * 100.00487 * 359.97287 * 15 14 13 17 17 N 1.32872 * 120.16579 * 359.72419 * 16 15 14 18 18 C 1.31986 * 119.98485 * 179.74011 * 17 16 15 19 19 C 1.38858 * 120.32240 * 0.51699 * 18 17 16 20 20 N 1.31738 * 120.34373 * 359.76275 * 19 18 17 21 21 C 1.33004 * 120.00620 * 359.97438 * 20 19 18 22 22 C 1.47766 * 120.16097 * 180.02562 * 21 20 19 23 23 N 1.34773 * 119.99976 * 359.97438 * 22 21 20 24 24 O 1.21568 * 119.99655 * 179.97438 * 22 21 20 25 25 H 1.08992 * 109.46922 * 89.99674 * 1 2 3 26 26 H 1.08995 * 109.47032 * 209.99925 * 1 2 3 27 27 H 1.08998 * 109.46509 * 329.99724 * 1 2 3 28 28 H 0.97008 * 119.99603 * 179.97438 * 7 6 4 29 29 H 1.07995 * 119.83545 * 180.23209 * 18 17 16 30 30 H 1.08004 * 119.82640 * 179.73890 * 19 18 17 31 31 H 0.96998 * 119.99950 * 359.97438 * 23 22 21 32 32 H 0.97002 * 120.00193 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3002 1.1022 0.0000 4 6 1.9083 2.4439 -0.0059 5 1 0.8591 2.7000 -0.0106 6 6 2.8765 3.4564 -0.0045 7 7 4.1472 3.1461 0.0018 8 14 2.3528 5.2494 -0.0116 9 1 0.8701 5.3320 -0.0175 10 1 2.8808 5.9242 1.2013 11 1 2.8912 5.9175 -1.2236 12 7 3.5488 0.6406 0.0058 13 7 3.5363 -0.6445 0.0099 14 6 2.2903 -1.0894 0.0064 15 16 1.7870 -2.7780 0.0104 16 6 3.3623 -3.5670 0.0189 17 7 4.4738 -2.8388 0.0148 18 6 5.6520 -3.4336 0.0264 19 6 5.7377 -4.8195 0.0319 20 7 4.6441 -5.5539 0.0304 21 6 3.4498 -4.9686 0.0241 22 6 2.2209 -5.7891 0.0230 23 7 2.3085 -7.1339 0.0279 24 8 1.1308 -5.2509 0.0177 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 4.8176 3.8472 0.0024 29 1 6.5538 -2.8394 0.0269 30 1 6.7061 -5.2978 0.0371 31 1 3.1783 -7.5632 0.0318 32 1 1.5018 -7.6726 0.0275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001472775461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:47 Heat of formation + Delta-G solvation = 73.528420 kcal Electronic energy + Delta-G solvation = -21868.635104 eV Core-core repulsion = 18377.543135 eV Total energy + Delta-G solvation = -3491.091969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 306.064 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -42.36671 -42.12962 -40.16604 -35.73819 -35.56298 -35.08102 -34.44778 -32.65788 -31.21723 -28.24997 -27.43233 -26.55706 -25.77038 -22.77193 -22.61679 -22.14013 -19.44384 -19.29740 -18.98885 -18.85662 -17.41720 -17.28656 -16.71195 -16.69731 -16.38143 -16.14770 -15.87360 -15.32767 -15.15310 -14.96549 -14.13334 -13.92788 -13.81765 -13.16583 -12.98367 -12.77675 -12.75419 -12.58978 -12.56586 -11.94603 -11.52913 -11.49539 -11.22610 -11.10526 -10.80669 -10.43202 -10.30474 -10.08231 -9.96228 -8.54919 -8.53142 -6.56822 -0.77768 -0.02116 0.32155 0.94992 1.22110 1.41636 1.59616 1.60366 1.65463 2.19250 2.21090 2.54392 2.54862 2.66649 3.04737 3.32405 3.38251 3.52678 4.03646 4.06318 4.11149 4.40484 4.43344 4.59475 4.95416 5.01597 5.22420 5.36200 5.61433 5.74832 6.01540 6.11978 6.24973 6.27861 6.65023 6.77406 6.97148 7.15193 8.43123 8.75777 Molecular weight = 306.06amu Principal moments of inertia in cm(-1) A = 0.027333 B = 0.004046 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.168241 B = 6918.301741 C = 7927.324402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.524 5.524 3 C 0.316 3.684 4 C -0.473 4.473 5 H 0.101 0.899 6 C 0.029 3.971 7 N -0.785 5.785 8 Si 1.008 2.992 9 H -0.247 1.247 10 H -0.267 1.267 11 H -0.267 1.267 12 N -0.393 5.393 13 N -0.252 5.252 14 C -0.028 4.028 15 S 0.254 5.746 16 C 0.061 3.939 17 N -0.423 5.423 18 C 0.089 3.911 19 C 0.056 3.944 20 N -0.392 5.392 21 C 0.010 3.990 22 C 0.577 3.423 23 N -0.804 5.804 24 O -0.545 6.545 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.284 0.716 29 H 0.197 0.803 30 H 0.232 0.768 31 H 0.423 0.577 32 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -16.704 0.144 16.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.226 5.226 3 C 0.070 3.930 4 C -0.512 4.512 5 H 0.119 0.881 6 C -0.192 4.192 7 N -0.410 5.410 8 Si 0.826 3.174 9 H -0.170 1.170 10 H -0.191 1.191 11 H -0.192 1.192 12 N -0.241 5.241 13 N -0.096 5.096 14 C -0.398 4.398 15 S 0.497 5.503 16 C -0.189 4.189 17 N -0.139 5.139 18 C -0.080 4.080 19 C -0.113 4.113 20 N -0.109 5.109 21 C -0.138 4.138 22 C 0.359 3.641 23 N -0.369 5.369 24 O -0.425 6.425 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.214 0.786 30 H 0.248 0.752 31 H 0.255 0.745 32 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -1.313 -16.571 0.134 16.623 hybrid contribution 0.148 1.219 -0.012 1.228 sum -1.165 -15.352 0.122 15.397 Atomic orbital electron populations 1.21847 0.75685 1.04341 1.03293 1.46394 1.07862 1.04424 1.63902 1.22114 0.85522 0.89850 0.95482 1.18667 0.95940 0.86570 1.50071 0.88091 1.26985 0.93915 1.06421 0.91831 1.70174 1.02357 1.36850 1.31640 0.84797 0.80045 0.73819 0.78715 1.16983 1.19143 1.19154 1.75412 1.17107 1.00320 1.31231 1.74849 1.15906 1.05161 1.13728 1.27585 0.91959 0.97498 1.22796 1.84562 0.98067 0.83232 1.84449 1.24543 1.00577 0.93939 0.99884 1.69783 0.98436 1.36888 1.08833 1.24923 0.96759 0.95504 0.90795 1.24535 0.99083 0.91461 0.96210 1.68342 0.97203 1.38393 1.06972 1.21549 0.94913 0.89804 1.07573 1.17513 0.86176 0.84034 0.76374 1.43264 1.14603 1.04553 1.74452 1.90721 1.28059 1.71847 1.51828 0.90799 0.89518 0.89121 0.90565 0.78612 0.75190 0.74493 0.74632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.45 10.87 127.77 1.39 4.84 16 2 N -0.52 -26.94 3.26 -543.74 -1.77 -28.71 16 3 C 0.32 18.79 7.53 133.25 1.00 19.79 16 4 C -0.47 -26.10 9.04 23.09 0.21 -25.89 16 5 H 0.10 4.97 7.31 -2.91 -0.02 4.95 16 6 C 0.03 1.54 5.50 85.30 0.47 2.01 16 7 N -0.79 -45.26 11.94 21.86 0.26 -45.00 16 8 Si 1.01 38.59 29.56 68.60 2.03 40.62 16 9 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 10 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 11 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 12 N -0.39 -25.30 10.48 -55.05 -0.58 -25.88 16 13 N -0.25 -14.91 9.36 -56.22 -0.53 -15.44 16 14 C -0.03 -1.45 8.05 179.20 1.44 -0.01 16 15 S 0.25 10.49 18.89 -56.49 -1.07 9.42 16 16 C 0.06 2.37 6.99 85.07 0.60 2.96 16 17 N -0.42 -17.20 7.33 -190.30 -1.39 -18.60 16 18 C 0.09 2.52 11.22 84.82 0.95 3.47 16 19 C 0.06 1.11 11.21 84.86 0.95 2.06 16 20 N -0.39 -9.04 9.70 -183.85 -1.78 -10.83 16 21 C 0.01 0.31 6.77 42.02 0.28 0.59 16 22 C 0.58 15.43 8.06 86.76 0.70 16.13 16 23 N -0.80 -12.56 8.86 -175.66 -1.56 -14.12 16 24 O -0.55 -17.90 14.60 -3.93 -0.06 -17.96 16 25 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.09 2.85 7.84 -2.39 -0.02 2.83 16 27 H 0.09 3.17 7.53 -2.39 -0.02 3.15 16 28 H 0.28 14.68 8.30 -92.70 -0.77 13.91 16 29 H 0.20 4.44 8.06 -2.91 -0.02 4.41 16 30 H 0.23 1.85 8.06 -2.91 -0.02 1.82 16 31 H 0.42 4.79 8.18 -92.71 -0.76 4.04 16 32 H 0.42 4.60 8.93 -92.71 -0.83 3.77 16 Total: -1.00 -86.70 302.90 1.19 -85.51 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -0.36 Total: 15.02 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 7.99 Total: 25.95 kcal Atomic # 7 Polarization: -151.22 SS G_CDS: -7.35 Total: -158.57 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.06 Total: -17.96 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Atomic # 16 Polarization: 10.49 SS G_CDS: -1.07 Total: 9.42 kcal Total: -86.70 1.19 -85.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472775461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.039 kcal (2) G-P(sol) polarization free energy of solvation -86.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds