Wall clock time and date at job start Fri Apr 10 2020 17:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.38394 * 120.00059 * 179.72229 * 2 1 3 5 5 C 1.39892 * 120.00037 * 4.72643 * 4 2 1 6 6 N 1.31455 * 120.01722 * 179.75557 * 5 4 2 7 7 C 1.33283 * 120.00711 * 0.51744 * 6 5 4 8 8 C 1.47819 * 120.00141 * 179.71111 * 7 6 5 9 9 O 1.21556 * 119.99932 * 180.02562 * 8 7 6 10 10 N 1.34772 * 120.00239 * 0.02772 * 8 7 6 11 11 C 1.46498 * 120.00486 * 180.02562 * 10 8 7 12 12 C 1.50692 * 109.47697 * 179.97438 * 11 10 8 13 13 C 1.30997 * 120.00344 * 124.99796 * 12 11 10 14 14 C 1.50699 * 120.00158 * 180.02562 * 13 12 11 15 15 N 1.46495 * 109.47119 * 124.99905 * 14 13 12 16 16 C 1.36943 * 120.00115 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99925 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00404 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99475 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00221 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46968 * 90.00098 * 20 18 16 22 22 H 1.48499 * 109.47042 * 210.00097 * 20 18 16 23 23 H 1.48502 * 109.46922 * 330.00327 * 20 18 16 24 24 C 1.39412 * 119.99377 * 359.73656 * 7 6 5 25 25 N 1.32050 * 119.98540 * 359.97438 * 24 7 6 26 26 H 1.08995 * 109.47304 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46512 * 120.00448 * 1 2 3 28 28 H 1.08998 * 109.47174 * 239.99569 * 1 2 3 29 29 H 1.09003 * 109.47269 * 89.99349 * 3 2 1 30 30 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 31 31 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 32 32 H 1.07999 * 119.99374 * 0.02562 * 5 4 2 33 33 H 0.97003 * 119.99733 * 359.97438 * 10 8 7 34 34 H 1.09005 * 109.46765 * 299.99804 * 11 10 8 35 35 H 1.09006 * 109.47015 * 59.99261 * 11 10 8 36 36 H 1.08003 * 119.99802 * 305.00162 * 12 11 10 37 37 H 1.07995 * 120.00027 * 0.02562 * 13 12 11 38 38 H 1.08997 * 109.47021 * 244.99712 * 14 13 12 39 39 H 1.08999 * 109.47211 * 4.99739 * 14 13 12 40 40 H 0.97000 * 120.00778 * 0.02562 * 15 14 13 41 41 H 0.97001 * 119.99716 * 179.97438 * 19 18 16 42 42 H 1.08001 * 120.00317 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1985 0.0058 5 6 1.4612 -2.4084 -0.0882 6 7 2.1185 -3.5469 -0.0875 7 6 3.4475 -3.5491 0.0131 8 6 4.1860 -4.8296 0.0202 9 8 5.3980 -4.8317 0.1124 10 7 3.5155 -5.9948 -0.0755 11 6 4.2473 -7.2639 -0.0679 12 6 3.2723 -8.4068 -0.1855 13 6 3.4126 -9.2919 -1.1410 14 6 2.4372 -10.4346 -1.2589 15 7 1.8617 -10.4483 -2.6060 16 6 0.9436 -11.4049 -2.9486 17 1 0.6435 -12.1489 -2.2256 18 6 0.3978 -11.4176 -4.2249 19 7 0.7631 -10.5106 -5.1058 20 14 -0.8550 -12.7221 -4.6920 21 1 -2.2212 -12.2297 -4.3819 22 1 -0.7508 -13.0107 -6.1450 23 1 -0.5889 -13.9627 -3.9205 24 6 4.1410 -2.3438 0.1121 25 7 3.4809 -1.2002 0.1056 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3632 -0.5139 -0.8900 28 1 -0.3633 -0.5139 0.8899 29 1 2.3791 1.5835 1.0277 30 1 3.1499 1.1384 -0.5138 31 1 1.6084 2.0284 -0.5138 32 1 0.3840 -2.4071 -0.1656 33 1 2.5483 -5.9932 -0.1488 34 1 4.9401 -7.2888 -0.9091 35 1 4.8045 -7.3564 0.8645 36 1 2.4577 -8.4963 0.5181 37 1 4.2273 -9.2027 -1.8442 38 1 2.9560 -11.3755 -1.0758 39 1 1.6411 -10.3099 -0.5249 40 1 2.1314 -9.7803 -3.2556 41 1 0.3821 -10.5197 -5.9978 42 1 5.2179 -2.3455 0.1940 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497579360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:09 Heat of formation + Delta-G solvation = 56.965144 kcal Electronic energy + Delta-G solvation = -23098.710935 eV Core-core repulsion = 19501.239957 eV Total energy + Delta-G solvation = -3597.470978 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.49097 -39.41870 -37.38284 -36.22788 -34.80541 -34.32506 -32.74628 -31.33062 -30.45002 -28.94951 -27.54690 -26.31320 -24.54488 -24.13464 -22.89155 -21.85919 -20.80169 -19.58377 -18.30416 -18.02544 -17.58738 -17.06371 -16.15689 -15.79486 -15.42888 -15.33687 -14.91144 -14.84964 -14.52781 -14.31040 -13.74516 -13.61564 -13.34484 -13.20991 -13.18963 -12.98736 -12.74074 -12.54363 -11.99019 -11.82860 -11.78241 -11.61446 -11.00836 -10.81711 -10.60728 -10.45185 -10.39582 -10.05920 -9.78485 -9.42991 -9.19258 -8.96026 -8.68014 -8.19420 -6.92660 -5.76132 -3.05556 0.36971 0.84935 2.22681 2.33218 2.67032 3.31274 3.44165 3.49026 3.51072 3.64413 3.89367 3.95104 4.06110 4.48130 4.60909 4.69222 4.75960 4.79687 4.91270 5.04107 5.06775 5.10293 5.23175 5.31714 5.33642 5.56930 5.65336 5.77737 5.85928 6.04422 6.15744 6.16879 6.39109 6.51326 6.56183 6.60580 6.95051 7.02955 7.19151 7.39837 7.62578 7.69860 8.16440 8.42261 9.53409 10.10309 10.45555 11.46641 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.002313 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.120598 B =12103.479083 C =13521.069150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.599 5.599 3 C 0.094 3.906 4 C 0.370 3.630 5 C -0.001 4.001 6 N -0.372 5.372 7 C -0.048 4.048 8 C 0.582 3.418 9 O -0.543 6.543 10 N -0.704 5.704 11 C 0.154 3.846 12 C -0.200 4.200 13 C -0.107 4.107 14 C 0.172 3.828 15 N -0.730 5.730 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.171 3.829 25 N -0.508 5.508 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.171 0.829 33 H 0.413 0.587 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.031 0.969 39 H 0.026 0.974 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 24.636 13.409 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.311 5.311 3 C -0.049 4.049 4 C 0.130 3.870 5 C -0.174 4.174 6 N -0.088 5.088 7 C -0.188 4.188 8 C 0.366 3.634 9 O -0.421 6.421 10 N -0.355 5.355 11 C 0.032 3.968 12 C -0.220 4.220 13 C -0.126 4.126 14 C 0.046 3.954 15 N -0.374 5.374 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.009 3.991 25 N -0.231 5.231 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.188 0.812 33 H 0.249 0.751 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.447 24.604 13.471 28.157 hybrid contribution -1.205 -0.383 -0.603 1.401 sum 1.242 24.221 12.868 27.456 Atomic orbital electron populations 1.21879 0.77388 1.03848 1.02378 1.46235 1.05792 1.03060 1.75998 1.21730 0.97737 0.83503 1.01929 1.19623 0.89830 0.87579 0.89961 1.23168 1.01384 0.86469 1.06375 1.68133 1.07750 1.28969 1.03958 1.21680 0.90696 0.95597 1.10845 1.17488 0.86407 0.82752 0.76719 1.90785 1.12983 1.87174 1.51148 1.45879 1.11839 1.05057 1.72720 1.20374 0.93541 0.80577 1.02324 1.22685 1.01213 0.96614 1.01446 1.23324 0.98118 0.95899 0.95298 1.19823 0.92530 0.93604 0.89486 1.42302 1.50078 1.36264 1.08750 1.19250 1.15457 1.06267 0.96244 0.91069 1.24771 1.00737 0.99127 0.96417 1.69672 1.46871 1.36312 1.05250 0.86157 0.81296 0.81078 0.77464 1.21689 1.21743 1.20716 1.23497 1.01611 0.85899 0.88113 1.68131 1.06270 1.29539 1.19144 0.89644 0.91498 0.91652 0.92771 0.90179 0.91174 0.81185 0.75133 0.90973 0.90868 0.86697 0.87243 0.95152 0.95647 0.78123 0.93476 0.80097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.30 9.40 59.85 0.56 0.86 16 2 N -0.60 -4.00 3.37 -189.51 -0.64 -4.64 16 3 C 0.09 0.49 10.38 59.85 0.62 1.11 16 4 C 0.37 3.54 7.36 -155.02 -1.14 2.40 16 5 C 0.00 -0.01 10.49 -17.09 -0.18 -0.19 16 6 N -0.37 -4.48 9.69 -9.44 -0.09 -4.57 16 7 C -0.05 -0.61 6.74 -82.88 -0.56 -1.16 16 8 C 0.58 8.33 7.80 -12.34 -0.10 8.23 16 9 O -0.54 -8.92 16.33 5.32 0.09 -8.83 16 10 N -0.70 -9.53 5.54 -62.44 -0.35 -9.88 16 11 C 0.15 2.08 6.11 -5.20 -0.03 2.05 16 12 C -0.20 -2.86 9.24 -36.03 -0.33 -3.20 16 13 C -0.11 -1.79 9.24 -36.03 -0.33 -2.12 16 14 C 0.17 3.52 6.70 -5.20 -0.03 3.49 16 15 N -0.73 -18.92 5.59 -61.09 -0.34 -19.26 16 16 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 20 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.17 1.95 10.76 -17.02 -0.18 1.77 16 25 N -0.51 -5.55 9.31 -11.96 -0.11 -5.66 16 26 H 0.08 0.13 7.79 -51.93 -0.40 -0.28 16 27 H 0.07 0.20 7.76 -51.93 -0.40 -0.20 16 28 H 0.06 0.19 8.09 -51.93 -0.42 -0.23 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.52 7.46 -51.93 -0.39 0.14 16 31 H 0.07 0.21 7.92 -51.93 -0.41 -0.20 16 32 H 0.17 1.14 6.71 -52.49 -0.35 0.79 16 33 H 0.41 5.35 7.80 -40.82 -0.32 5.03 16 34 H 0.07 1.02 7.79 -51.93 -0.40 0.61 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.12 1.56 7.84 -52.48 -0.41 1.15 16 37 H 0.11 1.79 7.84 -52.49 -0.41 1.38 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.03 0.52 7.79 -51.93 -0.40 0.11 16 40 H 0.39 10.53 7.66 -40.82 -0.31 10.22 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.18 1.84 7.63 -52.49 -0.40 1.44 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -34.64 364.14 -8.06 -42.71 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.86 Total: 9.30 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -1.95 Total: 5.71 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -0.81 Total: -71.90 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.64 -8.06 -42.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497579360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.671 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds