Wall clock time and date at job start Fri Apr 10 2020 17:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86800 * 120.00203 * 2 1 4 4 H 1.48494 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47078 * 300.00019 * 3 2 1 6 6 H 1.48506 * 109.47272 * 59.99554 * 3 2 1 7 7 C 1.38945 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99956 * 219.10772 * 7 2 1 9 9 N 1.36997 * 119.99786 * 38.82618 * 7 2 1 10 10 C 1.46507 * 120.00399 * 352.78455 * 9 7 2 11 11 C 1.50694 * 109.46941 * 266.85461 * 10 9 7 12 12 O 1.20823 * 120.00393 * 359.97438 * 11 10 9 13 13 O 1.34231 * 119.99840 * 179.97438 * 11 10 9 14 14 C 1.34782 * 119.99949 * 172.78295 * 9 7 2 15 15 O 1.21708 * 119.99772 * 355.65835 * 14 9 7 16 16 C 1.46752 * 120.00089 * 175.65658 * 14 9 7 17 17 C 1.41326 * 126.51149 * 355.93393 * 16 14 9 18 18 N 1.30360 * 108.46808 * 179.97438 * 17 16 14 19 19 N 1.39977 * 109.32626 * 0.02562 * 18 17 16 20 20 C 1.36001 * 108.17445 * 359.76597 * 19 18 17 21 21 N 1.37160 * 120.55337 * 179.67048 * 20 19 18 22 22 H 0.97006 * 119.87872 * 180.26002 * 21 20 19 23 23 C 1.36344 * 120.24607 * 0.51528 * 21 20 19 24 24 C 1.35251 * 119.83183 * 359.74495 * 23 21 20 25 25 C 1.34860 * 131.92242 * 179.97438 * 19 18 17 26 26 O 1.21819 * 120.11485 * 0.02562 * 25 19 18 27 27 H 0.97008 * 119.99876 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46586 * 26.85562 * 10 9 7 29 29 H 1.08996 * 109.46920 * 146.85191 * 10 9 7 30 30 H 0.96702 * 117.00667 * 179.97438 * 13 11 10 31 31 H 1.08011 * 125.76253 * 359.94275 * 17 16 14 32 32 H 1.08003 * 120.08605 * 179.76476 * 23 21 20 33 33 H 1.07998 * 120.14817 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3463 0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0091 -1.2033 0.0005 8 1 2.9076 -1.3078 0.5905 9 7 1.5511 -2.2590 -0.7429 10 6 0.2500 -2.1747 -1.4111 11 6 -0.8131 -2.7574 -0.5160 12 8 -0.5146 -3.1983 0.5686 13 8 -2.0916 -2.7865 -0.9236 14 6 2.2975 -3.3752 -0.8595 15 8 3.4115 -3.4161 -0.3710 16 6 1.7669 -4.5411 -1.5755 17 6 0.4707 -4.6735 -2.1230 18 7 0.3755 -5.8485 -2.6794 19 7 1.5865 -6.5335 -2.5256 20 6 2.4473 -5.7266 -1.8491 21 7 3.7165 -6.1539 -1.5527 22 1 4.3212 -5.5717 -1.0664 23 6 4.1331 -7.3919 -1.9433 24 6 3.2893 -8.2029 -2.6212 25 6 1.9837 -7.7608 -2.9187 26 8 1.2174 -8.4850 -3.5289 27 1 -0.4850 0.8401 -0.0004 28 1 0.0164 -1.1309 -1.6209 29 1 0.2848 -2.7342 -2.3458 30 1 -2.7379 -3.1703 -0.3151 31 1 -0.3093 -3.9274 -2.0860 32 1 5.1343 -7.7243 -1.7118 33 1 3.6142 -9.1844 -2.9335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071603.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:46 Heat of formation + Delta-G solvation = -2.264364 kcal Electronic energy + Delta-G solvation = -25562.905167 eV Core-core repulsion = 21593.480954 eV Total energy + Delta-G solvation = -3969.424213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.53934 -39.96053 -38.78372 -37.96201 -37.84707 -35.46662 -34.79706 -32.89730 -32.03860 -31.29764 -29.37097 -28.20331 -25.47898 -24.32203 -23.49181 -22.04880 -21.33299 -19.82703 -18.64855 -18.29419 -17.45042 -17.20183 -17.00754 -16.52399 -16.49856 -15.85803 -15.29201 -15.14718 -14.66424 -14.25226 -13.84108 -13.70882 -13.43518 -13.31229 -13.28746 -12.96872 -12.82151 -12.22677 -11.93278 -11.56189 -11.00547 -10.91153 -10.70496 -10.56410 -10.39812 -10.31369 -9.91467 -9.87880 -9.39330 -9.02800 -8.84279 -8.27425 -7.86944 -6.80575 -3.92826 0.85175 1.10053 2.04723 2.35590 2.63441 3.02383 3.10054 3.17419 3.25570 3.34699 3.61221 3.93154 4.11623 4.13589 4.36985 4.67692 4.78756 4.89130 4.89852 5.21672 5.39340 5.46429 5.55875 5.64498 6.11833 6.19055 6.37516 6.48270 6.79281 7.03212 7.15957 7.23299 7.31819 7.78460 7.92963 8.15171 8.70921 8.85937 9.08036 9.64068 10.27201 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.005158 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.733173 B = 5426.772398 C = 6442.195155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.041 3.959 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.312 4.312 8 H 0.118 0.882 9 N -0.407 5.407 10 C 0.095 3.905 11 C 0.473 3.527 12 O -0.498 6.498 13 O -0.529 6.529 14 C 0.523 3.477 15 O -0.594 6.594 16 C -0.259 4.259 17 C 0.083 3.917 18 N -0.264 5.264 19 N -0.359 5.359 20 C 0.338 3.662 21 N -0.582 5.582 22 H 0.448 0.552 23 C 0.194 3.806 24 C -0.322 4.322 25 C 0.566 3.434 26 O -0.502 6.502 27 H 0.276 0.724 28 H 0.152 0.848 29 H 0.099 0.901 30 H 0.398 0.602 31 H 0.216 0.784 32 H 0.188 0.812 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.327 -6.907 -4.411 9.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.165 4.165 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.208 1.208 7 C -0.438 4.438 8 H 0.136 0.864 9 N -0.122 5.122 10 C -0.031 4.031 11 C 0.313 3.687 12 O -0.384 6.384 13 O -0.340 6.340 14 C 0.315 3.685 15 O -0.481 6.481 16 C -0.276 4.276 17 C -0.105 4.105 18 N -0.082 5.082 19 N -0.160 5.160 20 C 0.116 3.884 21 N -0.199 5.199 22 H 0.290 0.710 23 C 0.064 3.936 24 C -0.352 4.352 25 C 0.365 3.635 26 O -0.374 6.374 27 H 0.087 0.913 28 H 0.169 0.831 29 H 0.116 0.884 30 H 0.255 0.745 31 H 0.231 0.769 32 H 0.205 0.795 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.846 -8.077 -5.168 10.332 hybrid contribution 0.307 1.376 1.271 1.898 sum 4.153 -6.701 -3.898 8.794 Atomic orbital electron populations 1.70180 1.06657 1.28902 1.42570 1.25264 0.94909 1.00172 0.96133 0.86130 0.81109 0.81044 0.78065 1.18708 1.20125 1.20804 1.19721 1.10252 0.86868 1.26999 0.86407 1.43352 1.12389 1.13534 1.42970 1.22202 0.81828 1.06573 0.92502 1.24117 0.82188 0.74659 0.87688 1.90662 1.82043 1.43207 1.22460 1.84554 1.19647 1.77819 1.52025 1.16326 0.86397 0.81096 0.84717 1.90555 1.20588 1.82355 1.54626 1.19926 0.94939 0.96644 1.16121 1.25404 0.96965 0.94700 0.93475 1.77516 0.98969 1.06697 1.24988 1.47961 1.10489 1.14347 1.43171 1.18574 0.83353 0.91495 0.94964 1.41078 1.11017 1.15848 1.52004 0.70959 1.22391 0.99668 0.82479 0.89110 1.21541 0.93153 1.05027 1.15526 1.17104 0.88885 0.78043 0.79451 1.90875 1.55400 1.52526 1.38612 0.91330 0.83118 0.88405 0.74486 0.76851 0.79546 0.80773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.21 10.17 55.50 0.56 -19.64 16 2 C 0.04 0.99 4.81 -17.46 -0.08 0.90 16 3 Si 0.91 18.61 29.68 -169.99 -5.05 13.56 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.31 -7.99 9.33 -14.98 -0.14 -8.12 16 8 H 0.12 3.19 7.42 -52.49 -0.39 2.80 16 9 N -0.41 -9.64 2.14 -117.54 -0.25 -9.89 16 10 C 0.10 1.95 4.73 -5.19 -0.02 1.93 16 11 C 0.47 9.83 5.11 36.00 0.18 10.01 16 12 O -0.50 -12.23 17.13 -18.75 -0.32 -12.55 16 13 O -0.53 -8.75 13.26 -39.26 -0.52 -9.27 16 14 C 0.52 12.06 7.51 -12.82 -0.10 11.96 16 15 O -0.59 -14.45 15.43 5.18 0.08 -14.37 16 16 C -0.26 -5.17 6.01 -104.85 -0.63 -5.80 16 17 C 0.08 1.56 9.27 -17.00 -0.16 1.41 16 18 N -0.26 -5.20 12.54 30.86 0.39 -4.81 16 19 N -0.36 -6.62 3.79 -13.81 -0.05 -6.67 16 20 C 0.34 5.90 7.79 -153.51 -1.20 4.71 16 21 N -0.58 -7.37 5.39 -11.71 -0.06 -7.43 16 22 H 0.45 5.37 7.79 -40.82 -0.32 5.06 16 23 C 0.19 1.66 11.25 -16.61 -0.19 1.47 16 24 C -0.32 -3.60 9.95 -39.59 -0.39 -3.99 16 25 C 0.57 9.65 7.70 -15.17 -0.12 9.53 16 26 O -0.50 -10.10 17.90 5.08 0.09 -10.01 16 27 H 0.28 6.16 8.31 -40.82 -0.34 5.82 16 28 H 0.15 3.20 5.47 -51.93 -0.28 2.92 16 29 H 0.10 1.71 4.65 -51.93 -0.24 1.47 16 30 H 0.40 4.95 9.10 45.56 0.41 5.37 16 31 H 0.22 3.74 3.18 -52.48 -0.17 3.58 16 32 H 0.19 0.51 8.06 -52.48 -0.42 0.08 16 33 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 294.25 15.07 4.43 4.43 Total: -1.00 -35.60 294.25 -4.50 -40.10 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -0.97 Total: 12.54 kcal Atomic # 6 Polarization: 26.85 SS G_CDS: -2.84 Total: 24.01 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.58 Total: -48.45 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.67 Total: -46.19 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.05 Total: 13.56 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -35.60 -4.50 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071603.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.838 kcal (2) G-P(sol) polarization free energy of solvation -35.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds