Wall clock time and date at job start Fri Apr 10 2020 17:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86800 * 120.00203 * 2 1 4 4 H 1.48494 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47078 * 300.00019 * 3 2 1 6 6 H 1.48506 * 109.47272 * 59.99554 * 3 2 1 7 7 C 1.38945 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99956 * 219.10772 * 7 2 1 9 9 N 1.36997 * 119.99786 * 38.82618 * 7 2 1 10 10 C 1.46507 * 120.00399 * 352.78455 * 9 7 2 11 11 C 1.50694 * 109.46941 * 266.85461 * 10 9 7 12 12 O 1.20823 * 120.00393 * 359.97438 * 11 10 9 13 13 O 1.34231 * 119.99840 * 179.97438 * 11 10 9 14 14 C 1.34782 * 119.99949 * 172.78295 * 9 7 2 15 15 O 1.21708 * 119.99772 * 355.65835 * 14 9 7 16 16 C 1.46752 * 120.00089 * 175.65658 * 14 9 7 17 17 C 1.41326 * 126.51149 * 355.93393 * 16 14 9 18 18 N 1.30360 * 108.46808 * 179.97438 * 17 16 14 19 19 N 1.39977 * 109.32626 * 0.02562 * 18 17 16 20 20 C 1.36001 * 108.17445 * 359.76597 * 19 18 17 21 21 N 1.37160 * 120.55337 * 179.67048 * 20 19 18 22 22 H 0.97006 * 119.87872 * 180.26002 * 21 20 19 23 23 C 1.36344 * 120.24607 * 0.51528 * 21 20 19 24 24 C 1.35251 * 119.83183 * 359.74495 * 23 21 20 25 25 C 1.34860 * 131.92242 * 179.97438 * 19 18 17 26 26 O 1.21819 * 120.11485 * 0.02562 * 25 19 18 27 27 H 0.97008 * 119.99876 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46586 * 26.85562 * 10 9 7 29 29 H 1.08996 * 109.46920 * 146.85191 * 10 9 7 30 30 H 0.96702 * 117.00667 * 179.97438 * 13 11 10 31 31 H 1.08011 * 125.76253 * 359.94275 * 17 16 14 32 32 H 1.08003 * 120.08605 * 179.76476 * 23 21 20 33 33 H 1.07998 * 120.14817 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3463 0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0091 -1.2033 0.0005 8 1 2.9076 -1.3078 0.5905 9 7 1.5511 -2.2590 -0.7429 10 6 0.2500 -2.1747 -1.4111 11 6 -0.8131 -2.7574 -0.5160 12 8 -0.5146 -3.1983 0.5686 13 8 -2.0916 -2.7865 -0.9236 14 6 2.2975 -3.3752 -0.8595 15 8 3.4115 -3.4161 -0.3710 16 6 1.7669 -4.5411 -1.5755 17 6 0.4707 -4.6735 -2.1230 18 7 0.3755 -5.8485 -2.6794 19 7 1.5865 -6.5335 -2.5256 20 6 2.4473 -5.7266 -1.8491 21 7 3.7165 -6.1539 -1.5527 22 1 4.3212 -5.5717 -1.0664 23 6 4.1331 -7.3919 -1.9433 24 6 3.2893 -8.2029 -2.6212 25 6 1.9837 -7.7608 -2.9187 26 8 1.2174 -8.4850 -3.5289 27 1 -0.4850 0.8401 -0.0004 28 1 0.0164 -1.1309 -1.6209 29 1 0.2848 -2.7342 -2.3458 30 1 -2.7379 -3.1703 -0.3151 31 1 -0.3093 -3.9274 -2.0860 32 1 5.1343 -7.7243 -1.7118 33 1 3.6142 -9.1844 -2.9335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071603.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:45 Heat of formation + Delta-G solvation = -30.110038 kcal Electronic energy + Delta-G solvation = -25564.112646 eV Core-core repulsion = 21593.480954 eV Total energy + Delta-G solvation = -3970.631692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.084 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.88693 -41.55274 -40.24195 -39.54492 -39.06515 -37.08958 -36.52184 -34.41505 -33.63878 -32.49131 -30.80458 -29.82991 -27.17091 -25.53951 -24.88047 -23.49450 -22.91646 -21.33018 -19.99374 -19.46981 -19.13984 -18.85711 -18.26142 -17.92613 -17.88838 -17.41703 -16.87539 -16.79049 -16.19212 -15.92469 -15.39357 -15.09565 -14.71654 -14.61452 -14.48690 -14.25353 -14.20881 -13.85100 -13.68652 -13.24459 -12.56169 -12.39627 -12.34595 -12.22867 -12.05187 -11.69186 -11.64357 -11.22190 -10.81063 -10.69152 -10.59557 -10.05171 -9.15437 -8.60084 -5.80516 -0.26669 -0.12688 0.75181 0.86993 1.37972 1.45098 1.50498 1.54670 1.64126 2.03005 2.16740 2.31113 2.43661 2.73405 3.07040 3.15466 3.35804 3.67954 3.80227 3.90118 3.94445 4.09834 4.46916 4.55012 4.68829 4.79979 4.87089 5.24464 5.48752 5.66547 5.78429 5.80537 5.85101 5.97944 6.33725 6.61510 7.04033 7.17163 7.32195 7.87391 8.48252 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.005158 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.733173 B = 5426.772398 C = 6442.195155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.018 3.982 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.261 1.261 6 H -0.281 1.281 7 C -0.353 4.353 8 H 0.090 0.910 9 N -0.421 5.421 10 C 0.095 3.905 11 C 0.482 3.518 12 O -0.542 6.542 13 O -0.513 6.513 14 C 0.522 3.478 15 O -0.618 6.618 16 C -0.298 4.298 17 C 0.093 3.907 18 N -0.296 5.296 19 N -0.364 5.364 20 C 0.358 3.642 21 N -0.573 5.573 22 H 0.454 0.546 23 C 0.228 3.772 24 C -0.325 4.325 25 C 0.544 3.456 26 O -0.549 6.549 27 H 0.283 0.717 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.419 0.581 31 H 0.222 0.778 32 H 0.263 0.737 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -7.672 -4.931 10.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.188 4.188 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.186 1.186 6 H -0.207 1.207 7 C -0.479 4.479 8 H 0.108 0.892 9 N -0.137 5.137 10 C -0.031 4.031 11 C 0.324 3.676 12 O -0.431 6.431 13 O -0.325 6.325 14 C 0.314 3.686 15 O -0.507 6.507 16 C -0.316 4.316 17 C -0.094 4.094 18 N -0.114 5.114 19 N -0.165 5.165 20 C 0.133 3.867 21 N -0.191 5.191 22 H 0.298 0.702 23 C 0.099 3.901 24 C -0.353 4.353 25 C 0.347 3.653 26 O -0.425 6.425 27 H 0.094 0.906 28 H 0.163 0.837 29 H 0.144 0.856 30 H 0.279 0.721 31 H 0.237 0.763 32 H 0.279 0.721 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.417 -8.857 -5.705 11.847 hybrid contribution -0.150 1.457 1.425 2.043 sum 5.267 -7.400 -4.281 10.041 Atomic orbital electron populations 1.70198 1.07370 1.29888 1.42314 1.25889 0.95544 1.02127 0.95191 0.85196 0.79207 0.77329 0.78370 1.19639 1.18572 1.20731 1.19550 1.10444 0.88838 1.29074 0.89234 1.43380 1.13585 1.13552 1.43190 1.22245 0.80888 1.06649 0.93286 1.24064 0.83204 0.73576 0.86788 1.90644 1.82934 1.45314 1.24205 1.84487 1.18530 1.77340 1.52192 1.16737 0.86064 0.81608 0.84215 1.90500 1.21481 1.83066 1.55648 1.19654 0.96149 0.96970 1.18818 1.25390 0.96748 0.94613 0.92694 1.77454 1.00525 1.07142 1.26294 1.48256 1.10234 1.14928 1.43055 1.18697 0.84757 0.90412 0.92880 1.41459 1.09097 1.17425 1.51098 0.70196 1.23528 1.01640 0.79427 0.85484 1.21910 0.90414 1.06936 1.16073 1.18336 0.90666 0.77158 0.79143 1.90852 1.56959 1.53374 1.41342 0.90645 0.83734 0.85641 0.72065 0.76285 0.72138 0.77222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -41.26 10.17 21.66 0.22 -41.04 16 2 C 0.02 0.86 4.81 84.92 0.41 1.27 16 3 Si 0.98 38.44 29.68 68.60 2.04 40.48 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.35 -18.67 9.33 84.06 0.78 -17.89 16 8 H 0.09 5.11 7.42 -2.91 -0.02 5.09 16 9 N -0.42 -20.55 2.14 -644.00 -1.38 -21.93 16 10 C 0.09 3.95 4.73 85.63 0.41 4.36 16 11 C 0.48 20.17 5.11 71.23 0.36 20.54 16 12 O -0.54 -27.20 17.13 21.97 0.38 -26.82 16 13 O -0.51 -16.56 13.26 -51.42 -0.68 -17.24 16 14 C 0.52 24.61 7.51 86.47 0.65 25.26 16 15 O -0.62 -30.72 15.43 -4.37 -0.07 -30.78 16 16 C -0.30 -11.99 6.01 -20.01 -0.12 -12.11 16 17 C 0.09 3.57 9.27 85.67 0.79 4.36 16 18 N -0.30 -11.78 12.54 -56.29 -0.71 -12.49 16 19 N -0.36 -13.24 3.79 -315.71 -1.20 -14.43 16 20 C 0.36 12.11 7.79 132.63 1.03 13.14 16 21 N -0.57 -12.72 5.39 -190.98 -1.03 -13.75 16 22 H 0.45 9.57 7.79 -92.70 -0.72 8.84 16 23 C 0.23 2.66 11.25 83.30 0.94 3.60 16 24 C -0.33 -5.96 9.95 22.26 0.22 -5.74 16 25 C 0.54 17.85 7.70 84.91 0.65 18.51 16 26 O -0.55 -22.11 17.90 -4.73 -0.08 -22.20 16 27 H 0.28 12.49 8.31 -92.70 -0.77 11.72 16 28 H 0.15 6.21 5.47 -2.39 -0.01 6.20 16 29 H 0.13 4.43 4.65 -2.39 -0.01 4.42 16 30 H 0.42 9.94 9.10 -74.06 -0.67 9.26 16 31 H 0.22 7.77 3.18 -2.90 -0.01 7.76 16 32 H 0.26 -0.80 8.06 -2.91 -0.02 -0.82 16 33 H 0.21 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -83.07 294.25 3.48 -79.60 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.15 Total: 25.32 kcal Atomic # 6 Polarization: 49.15 SS G_CDS: 6.13 Total: 55.28 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -4.09 Total: -103.63 kcal Atomic # 8 Polarization: -96.58 SS G_CDS: -0.46 Total: -97.04 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.04 Total: 40.48 kcal Total: -83.07 3.48 -79.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071603.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.485 kcal (2) G-P(sol) polarization free energy of solvation -83.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds