Wall clock time and date at job start Fri Apr 10 2020 17:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86802 * 120.00469 * 2 1 4 4 H 1.48498 * 109.47094 * 269.99915 * 3 2 1 5 5 H 1.48500 * 109.46723 * 30.00253 * 3 2 1 6 6 H 1.48502 * 109.46828 * 149.99828 * 3 2 1 7 7 C 1.38953 * 119.99427 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00574 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99840 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00137 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00017 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00002 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47018 * 179.97438 * 12 10 9 14 14 C 1.34781 * 119.99990 * 179.97438 * 13 12 10 15 15 O 1.21554 * 119.99943 * 0.02562 * 14 13 12 16 16 C 1.47845 * 119.99794 * 179.97438 * 14 13 12 17 17 C 1.39589 * 120.14559 * 359.97438 * 16 14 13 18 18 C 1.37937 * 119.85392 * 180.02562 * 17 16 14 19 19 C 1.38386 * 120.14118 * 359.72970 * 18 17 16 20 20 C 1.38342 * 120.29404 * 0.54582 * 19 18 17 21 21 C 1.50694 * 119.92637 * 179.72480 * 20 19 18 22 22 C 1.50706 * 109.47327 * 269.72779 * 21 20 19 23 23 O 1.20825 * 119.99859 * 359.97438 * 22 21 20 24 24 O 1.34224 * 120.00295 * 180.02562 * 22 21 20 25 25 C 1.37979 * 120.14191 * 359.45057 * 20 19 18 26 26 H 0.97001 * 119.99618 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00091 * 359.97438 * 9 7 2 28 28 H 1.08998 * 109.47218 * 60.00005 * 12 10 9 29 29 H 1.09003 * 109.47096 * 299.99596 * 12 10 9 30 30 H 0.96997 * 120.00130 * 0.02562 * 13 12 10 31 31 H 1.07997 * 120.07444 * 359.97438 * 17 16 14 32 32 H 1.07994 * 119.93037 * 179.97438 * 18 17 16 33 33 H 1.08001 * 119.85330 * 180.28830 * 19 18 17 34 34 H 1.08997 * 109.46894 * 149.72979 * 21 20 19 35 35 H 1.09000 * 109.47644 * 29.73127 * 21 20 19 36 36 H 0.96700 * 117.00196 * 179.97438 * 24 22 21 37 37 H 1.08001 * 120.07151 * 180.24874 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4399 0.7001 7 6 2.0087 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3797 -1.2035 0.0000 10 6 4.0535 -2.3708 0.0000 11 8 3.4470 -3.4211 -0.0009 12 6 5.5605 -2.3708 0.0000 13 7 6.0488 -3.7521 0.0006 14 6 7.3739 -3.9985 0.0002 15 8 8.1638 -3.0746 -0.0002 16 6 7.8666 -5.3924 0.0014 17 6 6.9621 -6.4556 0.0035 18 6 7.4283 -7.7538 0.0051 19 6 8.7895 -8.0032 -0.0009 20 6 9.6913 -6.9541 0.0027 21 6 11.1717 -7.2353 0.0023 22 6 11.6661 -7.3269 1.4230 23 8 10.8953 -7.1785 2.3416 24 8 12.9628 -7.5722 1.6679 25 6 9.2380 -5.6509 0.0010 26 1 -0.4850 0.8401 -0.0004 27 1 3.8648 -0.3635 0.0004 28 1 5.9239 -1.8570 0.8900 29 1 5.9239 -1.8571 -0.8901 30 1 5.4184 -4.4893 0.0006 31 1 5.8996 -6.2622 0.0047 32 1 6.7297 -8.5773 0.0072 33 1 9.1495 -9.0215 -0.0043 34 1 11.6944 -6.4295 -0.5130 35 1 11.3625 -8.1781 -0.5103 36 1 13.2328 -7.6216 2.5952 37 1 9.9430 -4.8327 -0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:55 Heat of formation + Delta-G solvation = -164.803831 kcal Electronic energy + Delta-G solvation = -23384.887623 eV Core-core repulsion = 19511.955513 eV Total energy + Delta-G solvation = -3872.932110 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61289 -41.13382 -40.29733 -39.28052 -37.05353 -36.35146 -35.49884 -34.10380 -33.83913 -32.23436 -29.83641 -28.82291 -26.48885 -24.58505 -23.72057 -22.30345 -21.52401 -21.15254 -20.54361 -19.08765 -18.88451 -17.75472 -17.44216 -17.28091 -17.05198 -16.84137 -16.80626 -16.55294 -15.79399 -15.64107 -15.60496 -15.08440 -14.75413 -14.44898 -14.25924 -14.13137 -13.95486 -13.76189 -13.24957 -13.22550 -12.97789 -12.66787 -12.47991 -12.46535 -12.12720 -12.01691 -11.65016 -11.60328 -11.19411 -10.69839 -10.39224 -10.31660 -9.93674 -9.86532 -8.47286 -6.09459 -0.19979 0.27732 1.26153 1.29914 1.32674 1.42778 1.69649 1.77217 1.90554 2.19086 2.25701 2.81914 2.90390 3.08761 3.50236 3.58725 3.87528 3.96058 4.07910 4.23815 4.26815 4.34849 4.36107 4.47200 4.57307 4.62861 4.83633 4.99316 5.13757 5.28044 5.37396 5.42139 5.46414 5.66775 5.85792 5.87592 6.38529 6.46126 6.75606 7.01366 7.03008 7.26442 7.74571 8.69018 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.032506 B = 0.002416 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.172454 B =11588.614398 C =12140.711119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.959 3.041 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.234 1.234 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.576 5.576 10 C 0.445 3.555 11 O -0.614 6.614 12 C 0.116 3.884 13 N -0.706 5.706 14 C 0.558 3.442 15 O -0.575 6.575 16 C -0.153 4.153 17 C -0.088 4.088 18 C -0.125 4.125 19 C -0.072 4.072 20 C -0.095 4.095 21 C -0.068 4.068 22 C 0.482 3.518 23 O -0.553 6.553 24 O -0.512 6.512 25 C -0.057 4.057 26 H 0.282 0.718 27 H 0.392 0.608 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.413 0.587 31 H 0.131 0.869 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.427 0.573 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.648 -14.839 -1.123 30.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.208 4.208 3 Si 0.779 3.221 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.157 1.157 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.216 5.216 10 C 0.232 3.768 11 O -0.500 6.500 12 C -0.011 4.011 13 N -0.360 5.360 14 C 0.347 3.653 15 O -0.456 6.456 16 C -0.156 4.156 17 C -0.107 4.107 18 C -0.143 4.143 19 C -0.090 4.090 20 C -0.095 4.095 21 C -0.105 4.105 22 C 0.326 3.674 23 O -0.443 6.443 24 O -0.326 6.326 25 C -0.076 4.076 26 H 0.091 0.909 27 H 0.228 0.772 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.252 0.748 31 H 0.149 0.851 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.288 0.712 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 26.233 -14.684 -1.278 30.090 hybrid contribution -0.648 0.959 0.832 1.426 sum 25.584 -13.725 -0.445 29.037 Atomic orbital electron populations 1.69777 1.08006 1.29498 1.49091 1.26076 0.96457 1.02611 0.95670 0.85441 0.79532 0.77013 0.80116 1.17982 1.19769 1.15708 1.19032 0.80878 0.95323 1.50857 0.91772 1.41922 1.06197 1.07384 1.66112 1.20438 0.89899 0.83950 0.82507 1.90521 1.70703 1.32298 1.56479 1.20942 0.89818 0.84988 1.05385 1.45654 1.07238 1.08922 1.74144 1.18624 0.81501 0.89628 0.75549 1.90717 1.55939 1.46729 1.52237 1.19787 0.95326 0.91615 1.08871 1.21602 0.99629 0.93095 0.96352 1.21437 0.96642 0.96442 0.99778 1.21644 0.92722 1.00082 0.94566 1.19467 0.95412 0.92505 1.02164 1.20381 0.90876 1.09111 0.90121 1.23739 0.79737 0.70971 0.92980 1.90784 1.57712 1.47408 1.48408 1.84482 1.27057 1.82974 1.38105 1.21170 0.93905 0.97433 0.95056 0.90870 0.77184 0.87747 0.87344 0.74761 0.85088 0.82473 0.82125 0.84571 0.82803 0.71173 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.33 13.96 21.66 0.30 -54.03 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 3 Si 0.96 38.23 27.74 68.60 1.90 40.13 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 7 C -0.33 -18.91 10.16 84.04 0.85 -18.06 16 8 H 0.06 4.31 7.39 -2.92 -0.02 4.29 16 9 N -0.58 -26.72 5.09 -306.99 -1.56 -28.28 16 10 C 0.44 19.65 7.85 87.66 0.69 20.34 16 11 O -0.61 -31.87 15.24 -3.06 -0.05 -31.91 16 12 C 0.12 3.94 6.15 85.63 0.53 4.47 16 13 N -0.71 -23.14 5.48 -469.69 -2.57 -25.71 16 14 C 0.56 17.99 7.77 86.79 0.67 18.67 16 15 O -0.57 -21.21 16.35 -3.88 -0.06 -21.27 16 16 C -0.15 -4.07 5.87 -20.09 -0.12 -4.19 16 17 C -0.09 -1.98 9.54 22.52 0.21 -1.76 16 18 C -0.13 -2.09 10.03 22.23 0.22 -1.87 16 19 C -0.07 -1.03 9.69 22.33 0.22 -0.81 16 20 C -0.10 -1.56 4.37 -19.90 -0.09 -1.65 16 21 C -0.07 -0.62 5.94 29.10 0.17 -0.45 16 22 C 0.48 6.83 8.32 71.24 0.59 7.42 16 23 O -0.55 -13.11 16.79 21.97 0.37 -12.74 16 24 O -0.51 -4.52 13.42 -51.35 -0.69 -5.21 16 25 C -0.06 -1.30 9.24 22.53 0.21 -1.09 16 26 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.39 15.26 5.76 -92.71 -0.53 14.73 16 28 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 29 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.41 13.46 5.47 -92.71 -0.51 12.96 16 31 H 0.13 2.89 6.41 -2.91 -0.02 2.88 16 32 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 34 H 0.14 0.80 8.08 -2.39 -0.02 0.79 16 35 H 0.15 0.31 8.08 -2.39 -0.02 0.29 16 36 H 0.43 0.88 9.10 -74.06 -0.67 0.21 16 37 H 0.13 3.01 7.65 -2.91 -0.02 2.99 16 Total: -1.00 -83.23 333.90 1.66 -81.57 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -0.61 Total: 36.41 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 4.63 Total: 21.05 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -3.83 Total: -108.02 kcal Atomic # 8 Polarization: -70.71 SS G_CDS: -0.43 Total: -71.14 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.13 kcal Total: -83.23 1.66 -81.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.237 kcal (2) G-P(sol) polarization free energy of solvation -83.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds