Wall clock time and date at job start Fri Apr 10 2020 17:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86797 * 120.00219 * 2 1 4 4 H 1.48501 * 109.47554 * 270.00274 * 3 2 1 5 5 H 1.48503 * 109.47252 * 30.00238 * 3 2 1 6 6 H 1.48500 * 109.47210 * 150.00113 * 3 2 1 7 7 C 1.38958 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99634 * 359.97438 * 7 2 1 9 9 N 1.37089 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.34783 * 120.00000 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99505 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00248 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47074 * 179.97438 * 12 10 9 14 14 S 1.65600 * 119.99935 * 165.00151 * 13 12 10 15 15 O 1.42098 * 104.27846 * 308.93074 * 14 13 12 16 16 O 1.42102 * 104.27794 * 181.07123 * 14 13 12 17 17 C 1.81396 * 104.44933 * 65.00015 * 14 13 12 18 18 H 1.09000 * 112.90991 * 53.75087 * 17 14 13 19 19 C 1.53786 * 113.61571 * 184.99895 * 17 14 13 20 20 C 1.53781 * 87.17350 * 140.02404 * 19 17 14 21 21 H 1.08999 * 113.61567 * 89.07405 * 20 19 17 22 22 C 1.50698 * 113.61793 * 219.97800 * 20 19 17 23 23 O 1.20832 * 119.99673 * 0.02562 * 22 20 19 24 24 O 1.34224 * 120.00535 * 179.97438 * 22 20 19 25 25 C 1.53781 * 87.08070 * 334.52830 * 20 19 17 26 26 H 0.97008 * 120.00073 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00478 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.46952 * 60.00269 * 12 10 9 29 29 H 1.09002 * 109.47423 * 300.00259 * 12 10 9 30 30 H 0.97001 * 120.00099 * 345.00268 * 13 12 10 31 31 H 1.09002 * 113.61357 * 25.43320 * 19 17 14 32 32 H 1.09002 * 113.61608 * 254.61482 * 19 17 14 33 33 H 0.96694 * 117.00268 * 179.97438 * 24 22 20 34 34 H 1.09005 * 113.61471 * 139.98321 * 25 20 19 35 35 H 1.08996 * 113.61178 * 270.79663 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3797 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4471 -3.4210 -0.0011 12 6 5.5606 -2.3707 -0.0022 13 7 6.0489 -3.7519 -0.0014 14 16 7.6307 -4.0711 -0.3735 15 8 7.8474 -3.3863 -1.5995 16 8 7.7297 -5.4867 -0.2975 17 6 8.5763 -3.2942 0.9654 18 1 8.2532 -3.6161 1.9553 19 6 10.0993 -3.3604 0.7628 20 6 10.1577 -1.9236 1.3076 21 1 10.2661 -1.8714 2.3910 22 6 11.1360 -1.0402 0.5772 23 8 11.7815 -1.4849 -0.3424 24 8 11.2896 0.2409 0.9473 25 6 8.7060 -1.7655 0.8255 26 1 -0.4850 0.8401 0.0004 27 1 3.8648 -0.3634 -0.0014 28 1 5.9247 -1.8565 0.8873 29 1 5.9234 -1.8572 -0.8927 30 1 5.4457 -4.4794 0.2171 31 1 10.3976 -3.4436 -0.2823 32 1 10.5937 -4.0907 1.4034 33 1 11.9290 0.7681 0.4492 34 1 8.0743 -1.2084 1.5174 35 1 8.6234 -1.4112 -0.2019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:58 Heat of formation + Delta-G solvation = -170.339224 kcal Electronic energy + Delta-G solvation = -23135.850321 eV Core-core repulsion = 19262.289035 eV Total energy + Delta-G solvation = -3873.561286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.081 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07873 -38.72947 -38.57933 -37.13476 -36.42911 -36.01740 -34.78855 -33.83085 -31.81479 -28.27084 -27.41987 -26.48892 -24.20085 -23.11999 -20.23997 -19.75580 -19.42021 -18.72195 -18.62890 -17.99430 -17.43380 -16.59304 -16.29084 -15.86750 -15.56025 -15.50035 -15.01571 -14.76341 -14.47113 -13.80230 -13.28377 -13.26236 -13.08624 -12.73729 -12.69115 -12.48292 -12.44055 -12.16517 -12.06841 -12.02108 -11.91523 -11.81333 -11.28716 -11.27130 -10.96179 -10.68941 -10.56022 -10.08549 -9.72746 -9.46792 -8.77196 -8.32820 -6.42425 -3.95202 0.12900 1.73779 2.57993 2.61861 2.93541 2.99973 3.08901 3.34639 3.51334 3.58588 3.81204 3.84302 4.00340 4.24073 4.33854 4.51078 4.84787 4.87681 5.01633 5.06120 5.10037 5.15414 5.23522 5.27859 5.51629 5.58882 5.63032 5.94897 6.08152 7.14608 7.42976 7.47092 7.99673 8.43493 8.80680 9.27524 9.62044 10.69942 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.004056 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.631287 B = 6902.286631 C = 8330.825433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.579 5.579 10 C 0.443 3.557 11 O -0.570 6.570 12 C 0.101 3.899 13 N -1.097 6.097 14 S 2.623 3.377 15 O -0.949 6.949 16 O -0.954 6.954 17 C -0.631 4.631 18 H 0.163 0.837 19 C -0.091 4.091 20 C -0.097 4.097 21 H 0.135 0.865 22 C 0.486 3.514 23 O -0.509 6.509 24 O -0.513 6.513 25 C -0.097 4.097 26 H 0.275 0.725 27 H 0.373 0.627 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.428 0.572 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.411 0.589 34 H 0.105 0.895 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.569 1.413 5.514 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.218 5.218 10 C 0.228 3.772 11 O -0.453 6.453 12 C -0.029 4.029 13 N -0.861 5.861 14 S 2.713 3.287 15 O -0.939 6.939 16 O -0.944 6.944 17 C -0.739 4.739 18 H 0.181 0.819 19 C -0.130 4.130 20 C -0.117 4.117 21 H 0.153 0.847 22 C 0.328 3.672 23 O -0.397 6.397 24 O -0.325 6.325 25 C -0.135 4.135 26 H 0.086 0.914 27 H 0.206 0.794 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.267 0.733 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.271 0.729 34 H 0.124 0.876 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 22.234 0.133 4.690 22.724 hybrid contribution 0.711 1.858 0.523 2.057 sum 22.944 1.991 5.213 23.613 Atomic orbital electron populations 1.69617 1.05728 1.27782 1.48223 1.25067 0.95519 0.98126 0.97227 0.86675 0.79786 0.83847 0.79125 1.19377 1.20035 1.19325 1.19450 0.78990 0.96819 1.48649 0.86083 1.42143 1.07715 1.06036 1.65878 1.19505 0.87831 0.84866 0.85032 1.90561 1.68831 1.30971 1.54912 1.21010 0.96347 0.82900 1.02690 1.55161 1.28025 1.14601 1.88334 1.04665 0.73662 0.74369 0.76005 1.93614 1.84943 1.76389 1.38917 1.93606 1.85463 1.27956 1.87390 1.32165 1.10323 1.09010 1.22410 0.81950 1.22635 0.90369 0.95558 1.04405 1.22413 0.93466 0.93696 1.02093 0.84694 1.23263 0.81302 0.80895 0.81724 1.90752 1.45321 1.74791 1.28806 1.84539 1.62132 1.24035 1.61804 1.22771 0.94499 0.91529 1.04750 0.91387 0.79379 0.90165 0.88645 0.73275 0.87412 0.88092 0.72944 0.87615 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.60 13.96 55.50 0.77 -23.82 16 2 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 18.23 27.73 -169.99 -4.71 13.52 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -4.89 6.52 56.52 0.37 -4.52 16 7 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 16 8 H 0.12 3.75 7.39 -52.49 -0.39 3.37 16 9 N -0.58 -12.83 5.09 -10.96 -0.06 -12.88 16 10 C 0.44 9.29 7.85 -10.98 -0.09 9.21 16 11 O -0.57 -14.31 15.30 5.55 0.08 -14.23 16 12 C 0.10 1.46 6.19 -5.20 -0.03 1.43 16 13 N -1.10 -15.40 5.82 -11.66 -0.07 -15.47 16 14 S 2.62 32.63 5.39 -107.50 -0.58 32.05 16 15 O -0.95 -14.52 16.83 -57.54 -0.97 -15.49 16 16 O -0.95 -14.70 18.08 -57.54 -1.04 -15.74 16 17 C -0.63 -4.84 4.42 -25.77 -0.11 -4.96 16 18 H 0.16 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.09 -0.68 6.99 -25.92 -0.18 -0.86 16 20 C -0.10 -0.64 4.26 -90.96 -0.39 -1.03 16 21 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 22 C 0.49 4.13 7.85 36.00 0.28 4.41 16 23 O -0.51 -6.01 16.66 -18.76 -0.31 -6.32 16 24 O -0.51 -3.24 13.42 -39.24 -0.53 -3.77 16 25 C -0.10 -0.69 6.35 -25.78 -0.16 -0.85 16 26 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.37 7.03 5.76 -40.82 -0.24 6.80 16 28 H 0.08 0.82 7.50 -51.93 -0.39 0.43 16 29 H 0.10 1.24 7.70 -51.93 -0.40 0.84 16 30 H 0.43 6.56 7.67 -34.47 -0.26 6.30 16 31 H 0.11 0.96 7.39 -51.93 -0.38 0.58 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.41 1.02 9.10 45.56 0.41 1.43 16 34 H 0.11 0.53 7.93 -51.93 -0.41 0.12 16 35 H 0.11 0.87 7.50 -51.93 -0.39 0.48 16 LS Contribution 319.26 15.07 4.81 4.81 Total: -1.00 -38.23 319.26 -6.41 -44.63 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -2.88 Total: 12.82 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.93 Total: -0.11 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.65 Total: -52.17 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -2.76 Total: -55.55 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -4.71 Total: 13.52 kcal Atomic # 16 Polarization: 32.63 SS G_CDS: -0.58 Total: 32.05 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -38.23 -6.41 -44.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.706 kcal (2) G-P(sol) polarization free energy of solvation -38.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds