Wall clock time and date at job start Fri Apr 10 2020 17:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86797 * 120.00219 * 2 1 4 4 H 1.48501 * 109.47554 * 270.00274 * 3 2 1 5 5 H 1.48503 * 109.47252 * 30.00238 * 3 2 1 6 6 H 1.48500 * 109.47210 * 150.00113 * 3 2 1 7 7 C 1.38958 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99634 * 359.97438 * 7 2 1 9 9 N 1.37089 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.34783 * 120.00000 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99505 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00248 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47074 * 179.97438 * 12 10 9 14 14 S 1.65600 * 119.99935 * 165.00151 * 13 12 10 15 15 O 1.42098 * 104.27846 * 308.93074 * 14 13 12 16 16 O 1.42102 * 104.27794 * 181.07123 * 14 13 12 17 17 C 1.81396 * 104.44933 * 65.00015 * 14 13 12 18 18 H 1.09000 * 112.90991 * 53.75087 * 17 14 13 19 19 C 1.53786 * 113.61571 * 184.99895 * 17 14 13 20 20 C 1.53781 * 87.17350 * 140.02404 * 19 17 14 21 21 H 1.08999 * 113.61567 * 89.07405 * 20 19 17 22 22 C 1.50698 * 113.61793 * 219.97800 * 20 19 17 23 23 O 1.20832 * 119.99673 * 0.02562 * 22 20 19 24 24 O 1.34224 * 120.00535 * 179.97438 * 22 20 19 25 25 C 1.53781 * 87.08070 * 334.52830 * 20 19 17 26 26 H 0.97008 * 120.00073 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00478 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.46952 * 60.00269 * 12 10 9 29 29 H 1.09002 * 109.47423 * 300.00259 * 12 10 9 30 30 H 0.97001 * 120.00099 * 345.00268 * 13 12 10 31 31 H 1.09002 * 113.61357 * 25.43320 * 19 17 14 32 32 H 1.09002 * 113.61608 * 254.61482 * 19 17 14 33 33 H 0.96694 * 117.00268 * 179.97438 * 24 22 20 34 34 H 1.09005 * 113.61471 * 139.98321 * 25 20 19 35 35 H 1.08996 * 113.61178 * 270.79663 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3797 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4471 -3.4210 -0.0011 12 6 5.5606 -2.3707 -0.0022 13 7 6.0489 -3.7519 -0.0014 14 16 7.6307 -4.0711 -0.3735 15 8 7.8474 -3.3863 -1.5995 16 8 7.7297 -5.4867 -0.2975 17 6 8.5763 -3.2942 0.9654 18 1 8.2532 -3.6161 1.9553 19 6 10.0993 -3.3604 0.7628 20 6 10.1577 -1.9236 1.3076 21 1 10.2661 -1.8714 2.3910 22 6 11.1360 -1.0402 0.5772 23 8 11.7815 -1.4849 -0.3424 24 8 11.2896 0.2409 0.9473 25 6 8.7060 -1.7655 0.8255 26 1 -0.4850 0.8401 0.0004 27 1 3.8648 -0.3634 -0.0014 28 1 5.9247 -1.8565 0.8873 29 1 5.9234 -1.8572 -0.8927 30 1 5.4457 -4.4794 0.2171 31 1 10.3976 -3.4436 -0.2823 32 1 10.5937 -4.0907 1.4034 33 1 11.9290 0.7681 0.4492 34 1 8.0743 -1.2084 1.5174 35 1 8.6234 -1.4112 -0.2019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:58 Heat of formation + Delta-G solvation = -205.771822 kcal Electronic energy + Delta-G solvation = -23137.386794 eV Core-core repulsion = 19262.289035 eV Total energy + Delta-G solvation = -3875.097759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.081 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.65849 -40.38396 -39.20988 -38.19108 -37.08707 -37.02042 -36.33096 -35.38421 -33.77432 -28.89371 -28.85781 -27.00296 -25.93604 -23.75250 -21.46310 -20.83366 -20.55386 -20.23083 -19.29509 -18.89324 -18.41761 -17.48862 -17.24629 -17.06358 -16.69063 -16.49453 -16.16513 -16.12864 -15.73241 -14.95073 -14.43051 -14.36069 -14.20325 -14.02066 -13.73860 -13.61339 -13.36996 -13.17392 -13.14051 -13.07263 -12.93750 -12.65461 -12.51064 -12.39177 -11.94441 -11.77288 -11.54366 -11.52326 -11.33244 -10.67064 -10.37470 -10.26185 -8.40690 -6.03282 -0.80084 1.15598 1.33580 1.40037 1.49038 1.62478 1.88511 2.14569 2.26132 2.59647 2.89699 2.91599 3.09446 3.15899 3.32224 3.46430 3.84920 3.88690 4.34625 4.38846 4.43327 4.47462 4.50284 4.58344 4.74022 4.76495 4.87572 5.10860 5.54251 5.63536 5.88054 6.00857 6.56136 6.85243 6.99851 7.35514 7.89063 8.76356 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.004056 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.631287 B = 6902.286631 C = 8330.825433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.217 1.217 7 C -0.333 4.333 8 H 0.056 0.944 9 N -0.580 5.580 10 C 0.443 3.557 11 O -0.619 6.619 12 C 0.107 3.893 13 N -1.109 6.109 14 S 2.616 3.384 15 O -0.988 6.988 16 O -0.994 6.994 17 C -0.594 4.594 18 H 0.203 0.797 19 C -0.106 4.106 20 C -0.088 4.088 21 H 0.173 0.827 22 C 0.487 3.513 23 O -0.553 6.553 24 O -0.508 6.508 25 C -0.106 4.106 26 H 0.280 0.720 27 H 0.395 0.605 28 H 0.140 0.860 29 H 0.116 0.884 30 H 0.420 0.580 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.427 0.573 34 H 0.142 0.858 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.869 4.175 7.717 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.212 4.212 3 Si 0.780 3.220 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.139 1.139 7 C -0.463 4.463 8 H 0.074 0.926 9 N -0.221 5.221 10 C 0.230 3.770 11 O -0.505 6.505 12 C -0.023 4.023 13 N -0.869 5.869 14 S 2.714 3.286 15 O -0.978 6.978 16 O -0.985 6.985 17 C -0.708 4.708 18 H 0.220 0.780 19 C -0.145 4.145 20 C -0.108 4.108 21 H 0.190 0.810 22 C 0.331 3.669 23 O -0.444 6.444 24 O -0.321 6.321 25 C -0.144 4.144 26 H 0.089 0.911 27 H 0.231 0.769 28 H 0.158 0.842 29 H 0.133 0.867 30 H 0.257 0.743 31 H 0.104 0.896 32 H 0.144 0.856 33 H 0.288 0.712 34 H 0.160 0.840 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 25.533 2.884 6.852 26.594 hybrid contribution -0.264 0.906 -0.154 0.957 sum 25.269 3.791 6.698 26.415 Atomic orbital electron populations 1.69805 1.08355 1.29422 1.49632 1.26166 0.96444 1.02916 0.95681 0.85424 0.80123 0.76417 0.79987 1.18537 1.20180 1.13916 1.19015 0.81423 0.95038 1.50784 0.92596 1.41923 1.05867 1.07561 1.66738 1.20785 0.90748 0.83603 0.81861 1.90548 1.70956 1.32901 1.56090 1.21195 0.90604 0.83965 1.06506 1.55214 1.28714 1.14196 1.88814 1.04666 0.73402 0.73658 0.76871 1.93559 1.85199 1.76522 1.42507 1.93550 1.85814 1.30801 1.88291 1.31924 1.08882 1.09225 1.20757 0.77983 1.22812 0.90053 0.97581 1.04039 1.22522 0.92453 0.92023 1.03758 0.80969 1.23655 0.80865 0.81418 0.80947 1.90751 1.47232 1.75649 1.30766 1.84504 1.62494 1.23316 1.61786 1.23006 0.95472 0.90576 1.05336 0.91067 0.76896 0.84231 0.86650 0.74290 0.89573 0.85630 0.71151 0.83988 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.44 13.96 21.66 0.30 -54.14 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 3 Si 0.96 35.84 27.73 68.60 1.90 37.74 16 4 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 5 H -0.28 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.22 -6.25 6.52 99.48 0.65 -5.60 16 7 C -0.33 -18.59 10.16 84.04 0.85 -17.73 16 8 H 0.06 3.76 7.39 -2.91 -0.02 3.74 16 9 N -0.58 -25.02 5.09 -306.98 -1.56 -26.59 16 10 C 0.44 18.26 7.85 87.66 0.69 18.95 16 11 O -0.62 -32.21 15.30 -3.07 -0.05 -32.25 16 12 C 0.11 2.74 6.19 85.63 0.53 3.27 16 13 N -1.11 -29.42 5.82 -190.79 -1.11 -30.53 16 14 S 2.62 61.60 5.39 -56.49 -0.30 61.30 16 15 O -0.99 -29.78 16.83 -127.65 -2.15 -31.93 16 16 O -0.99 -30.70 18.08 -127.65 -2.31 -33.01 16 17 C -0.59 -6.49 4.42 31.21 0.14 -6.35 16 18 H 0.20 0.74 8.14 -2.39 -0.02 0.72 16 19 C -0.11 -1.22 6.99 31.12 0.22 -1.00 16 20 C -0.09 -0.73 4.26 -11.01 -0.05 -0.77 16 21 H 0.17 0.20 8.14 -2.39 -0.02 0.18 16 22 C 0.49 6.68 7.85 71.24 0.56 7.24 16 23 O -0.55 -12.23 16.66 21.95 0.37 -11.87 16 24 O -0.51 -4.49 13.42 -51.36 -0.69 -5.18 16 25 C -0.11 -0.92 6.35 31.21 0.20 -0.72 16 26 H 0.28 14.92 8.31 -92.70 -0.77 14.15 16 27 H 0.39 13.38 5.76 -92.71 -0.53 12.84 16 28 H 0.14 1.96 7.50 -2.38 -0.02 1.94 16 29 H 0.12 2.57 7.70 -2.39 -0.02 2.55 16 30 H 0.42 12.91 7.67 -96.74 -0.74 12.16 16 31 H 0.09 1.43 7.39 -2.39 -0.02 1.41 16 32 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.43 0.82 9.10 -74.06 -0.67 0.14 16 34 H 0.14 0.29 7.93 -2.38 -0.02 0.27 16 35 H 0.10 1.16 7.50 -2.39 -0.02 1.15 16 Total: -1.00 -92.85 319.26 -2.82 -95.67 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: -0.83 Total: 28.12 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 3.61 Total: 2.66 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -2.37 Total: -111.25 kcal Atomic # 8 Polarization: -109.41 SS G_CDS: -4.83 Total: -114.24 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 1.90 Total: 37.74 kcal Atomic # 16 Polarization: 61.60 SS G_CDS: -0.30 Total: 61.30 kcal Total: -92.85 -2.82 -95.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.098 kcal (2) G-P(sol) polarization free energy of solvation -92.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds