Wall clock time and date at job start Fri Apr 10 2020 17:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48499 * 109.47026 * 269.99439 * 3 2 1 5 5 H 1.48496 * 109.47474 * 29.99475 * 3 2 1 6 6 H 1.48504 * 109.47117 * 150.00006 * 3 2 1 7 7 C 1.38949 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99737 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00395 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 7 13 13 O 1.45194 * 109.47090 * 179.97438 * 12 10 9 14 14 C 1.34788 * 116.99627 * 179.97438 * 13 12 10 15 15 O 1.21537 * 120.00083 * 0.02562 * 14 13 12 16 16 C 1.47162 * 119.99634 * 180.02562 * 14 13 12 17 17 C 1.37915 * 126.53922 * 0.02562 * 16 14 13 18 18 N 1.34737 * 108.24289 * 180.02562 * 17 16 14 19 19 H 0.96994 * 125.35065 * 180.02562 * 18 17 16 20 20 C 1.37321 * 109.29103 * 0.02562 * 18 17 16 21 21 C 1.47997 * 125.75466 * 179.97438 * 20 18 17 22 22 N 1.34181 * 126.70107 * 179.70990 * 21 20 18 23 23 N 1.28978 * 107.25499 * 179.83245 * 22 21 20 24 24 N 1.28724 * 108.98866 * 0.44000 * 23 22 21 25 25 H 0.96993 * 125.32395 * 179.72444 * 24 23 22 26 26 N 1.28868 * 109.35367 * 359.71616 * 24 23 22 27 27 C 1.35682 * 108.49227 * 359.72062 * 20 18 17 28 28 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00506 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 31 31 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 32 32 H 1.07999 * 125.87963 * 359.97438 * 17 16 14 33 33 H 1.08004 * 126.47696 * 180.30612 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 8 2.1875 -5.9665 -0.0005 14 6 1.6723 -7.2120 -0.0006 15 8 0.4674 -7.3713 -0.0006 16 6 2.5688 -8.3790 -0.0005 17 6 3.9478 -8.3551 0.0001 18 7 4.3917 -9.6273 -0.0006 19 1 5.3235 -9.8965 0.0000 20 6 3.3174 -10.4826 -0.0022 21 6 3.3890 -11.9609 -0.0040 22 7 2.3532 -12.8139 -0.0001 23 7 2.8409 -14.0079 -0.0071 24 7 4.1261 -13.9354 -0.0056 25 1 4.7306 -14.6939 -0.0060 26 7 4.4840 -12.6974 -0.0038 27 6 2.1792 -9.7440 0.0037 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0005 30 1 0.6170 -4.9209 0.8897 31 1 0.6175 -4.9205 -0.8902 32 1 4.5655 -7.4692 0.0002 33 1 1.1679 -10.1230 0.0088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609496106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:15 Heat of formation + Delta-G solvation = 52.364347 kcal Electronic energy + Delta-G solvation = -22809.147763 eV Core-core repulsion = 18874.385179 eV Total energy + Delta-G solvation = -3934.762583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.85644 -41.62931 -39.72794 -38.00493 -35.84527 -34.79323 -33.95606 -33.77850 -31.74847 -31.33071 -29.82399 -28.17792 -25.04666 -24.86097 -24.24736 -23.26305 -21.13828 -19.87642 -19.66923 -19.50515 -18.40710 -18.00263 -17.57198 -16.96864 -16.14947 -15.97809 -15.32629 -14.90793 -14.77286 -14.46365 -14.32543 -13.91563 -13.76841 -13.69635 -12.87804 -12.71147 -12.59919 -12.20307 -11.87572 -11.80678 -11.59258 -11.56806 -11.41394 -11.10876 -10.42085 -10.37179 -10.27602 -10.25425 -9.57041 -9.39105 -8.50346 -8.47224 -8.04538 -6.46520 -3.88450 0.53113 1.05879 1.49620 1.78321 2.47734 2.50015 2.83845 3.15531 3.25415 3.31095 3.35044 3.44321 3.79152 3.93463 4.15741 4.71094 4.79276 4.86574 4.98016 5.03987 5.19308 5.20868 5.48902 5.74036 5.78688 5.79692 5.92239 6.12090 6.26731 6.40132 6.76829 6.92458 7.50814 7.72002 7.95273 8.11700 8.52797 9.10595 9.43804 9.93734 10.70734 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.053976 B = 0.002121 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.620099 B =13195.657904 C =13699.131641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.554 5.554 10 C 0.440 3.560 11 O -0.578 6.578 12 C 0.063 3.937 13 O -0.326 6.326 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.212 4.212 17 C 0.112 3.888 18 N -0.525 5.525 19 H 0.427 0.573 20 C 0.050 3.950 21 C 0.256 3.744 22 N -0.256 5.256 23 N -0.043 5.043 24 N -0.226 5.226 25 H 0.476 0.524 26 N -0.310 5.310 27 C -0.053 4.053 28 H 0.273 0.727 29 H 0.395 0.605 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.200 0.800 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.306 -24.752 0.007 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.225 3.775 11 O -0.462 6.462 12 C -0.015 4.015 13 O -0.241 6.241 14 C 0.379 3.621 15 O -0.405 6.405 16 C -0.220 4.220 17 C -0.030 4.030 18 N -0.119 5.119 19 H 0.266 0.734 20 C -0.061 4.061 21 C -0.024 4.024 22 N -0.130 5.130 23 N -0.039 5.039 24 N -0.072 5.072 25 H 0.330 0.670 26 N -0.162 5.162 27 C -0.081 4.081 28 H 0.083 0.917 29 H 0.229 0.771 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.217 0.783 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.510 -25.314 0.016 26.706 hybrid contribution 0.626 0.667 -0.013 0.915 sum 9.136 -24.647 0.003 26.285 Atomic orbital electron populations 1.69615 1.05972 1.28431 1.49734 1.25310 0.95686 0.99843 0.97000 0.85803 0.79202 0.80511 0.78443 1.20315 1.20858 1.19329 1.19711 0.93445 0.81793 1.48128 0.87647 1.41706 1.09408 1.04100 1.63886 1.19351 0.88315 0.84113 0.85707 1.90542 1.13462 1.86880 1.55350 1.22711 0.90837 0.84336 1.03599 1.86575 1.39974 1.13901 1.83614 1.20117 0.86574 0.82727 0.72697 1.90834 1.15870 1.86853 1.46974 1.18668 0.91889 0.91497 1.19948 1.22848 0.95069 0.86875 0.98197 1.41602 1.08974 1.05506 1.55852 0.73438 1.16299 0.87574 0.83098 1.19174 1.22457 0.84680 0.94074 1.01175 1.76197 1.25149 0.93860 1.17783 1.78966 0.92594 1.17937 1.14383 1.47628 1.06496 1.06916 1.46160 0.66955 1.74946 1.26517 0.91060 1.23665 1.20969 0.97916 0.90011 0.99165 0.91660 0.77118 0.89495 0.89498 0.78348 0.81923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.61 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 8 H 0.11 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.55 -13.94 5.29 -10.96 -0.06 -14.00 16 10 C 0.44 10.50 7.86 -10.98 -0.09 10.41 16 11 O -0.58 -15.69 16.08 -14.12 -0.23 -15.92 16 12 C 0.06 1.20 5.95 36.01 0.21 1.41 16 13 O -0.33 -5.99 9.59 -47.42 -0.45 -6.45 16 14 C 0.53 8.85 7.95 34.35 0.27 9.12 16 15 O -0.52 -9.59 16.72 -19.29 -0.32 -9.91 16 16 C -0.21 -2.77 6.14 -104.97 -0.64 -3.42 16 17 C 0.11 1.09 11.77 -16.39 -0.19 0.90 16 18 N -0.53 -4.17 6.01 -9.18 -0.06 -4.23 16 19 H 0.43 2.11 8.96 -40.82 -0.37 1.74 16 20 C 0.05 0.51 7.08 -82.32 -0.58 -0.08 16 21 C 0.26 2.55 8.20 -156.25 -1.28 1.27 16 22 N -0.26 -2.80 12.52 32.09 0.40 -2.40 16 23 N -0.04 -0.37 13.46 60.35 0.81 0.44 16 24 N -0.23 -1.26 7.90 60.35 0.48 -0.79 16 25 H 0.48 0.30 8.96 -340.35 -3.05 -2.75 16 26 N -0.31 -2.42 12.41 32.11 0.40 -2.02 16 27 C -0.05 -0.64 10.59 -39.07 -0.41 -1.05 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.40 9.47 7.90 -40.82 -0.32 9.14 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.16 1.92 8.06 -52.48 -0.42 1.49 16 LS Contribution 318.30 15.07 4.80 4.80 Total: -1.00 -35.73 318.30 -6.43 -42.16 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.94 Total: 5.35 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: -2.96 Total: 10.70 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 2.70 Total: -46.34 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.00 Total: -32.27 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.73 -6.43 -42.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.519 kcal (2) G-P(sol) polarization free energy of solvation -35.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds