Wall clock time and date at job start Fri Apr 10 2020 17:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48499 * 109.47026 * 269.99439 * 3 2 1 5 5 H 1.48496 * 109.47474 * 29.99475 * 3 2 1 6 6 H 1.48504 * 109.47117 * 150.00006 * 3 2 1 7 7 C 1.38949 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99737 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00395 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 7 13 13 O 1.45194 * 109.47090 * 179.97438 * 12 10 9 14 14 C 1.34788 * 116.99627 * 179.97438 * 13 12 10 15 15 O 1.21537 * 120.00083 * 0.02562 * 14 13 12 16 16 C 1.47162 * 119.99634 * 180.02562 * 14 13 12 17 17 C 1.37915 * 126.53922 * 0.02562 * 16 14 13 18 18 N 1.34737 * 108.24289 * 180.02562 * 17 16 14 19 19 H 0.96994 * 125.35065 * 180.02562 * 18 17 16 20 20 C 1.37321 * 109.29103 * 0.02562 * 18 17 16 21 21 C 1.47997 * 125.75466 * 179.97438 * 20 18 17 22 22 N 1.34181 * 126.70107 * 179.70990 * 21 20 18 23 23 N 1.28978 * 107.25499 * 179.83245 * 22 21 20 24 24 N 1.28724 * 108.98866 * 0.44000 * 23 22 21 25 25 H 0.96993 * 125.32395 * 179.72444 * 24 23 22 26 26 N 1.28868 * 109.35367 * 359.71616 * 24 23 22 27 27 C 1.35682 * 108.49227 * 359.72062 * 20 18 17 28 28 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00506 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 31 31 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 32 32 H 1.07999 * 125.87963 * 359.97438 * 17 16 14 33 33 H 1.08004 * 126.47696 * 180.30612 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 8 2.1875 -5.9665 -0.0005 14 6 1.6723 -7.2120 -0.0006 15 8 0.4674 -7.3713 -0.0006 16 6 2.5688 -8.3790 -0.0005 17 6 3.9478 -8.3551 0.0001 18 7 4.3917 -9.6273 -0.0006 19 1 5.3235 -9.8965 0.0000 20 6 3.3174 -10.4826 -0.0022 21 6 3.3890 -11.9609 -0.0040 22 7 2.3532 -12.8139 -0.0001 23 7 2.8409 -14.0079 -0.0071 24 7 4.1261 -13.9354 -0.0056 25 1 4.7306 -14.6939 -0.0060 26 7 4.4840 -12.6974 -0.0038 27 6 2.1792 -9.7440 0.0037 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0005 30 1 0.6170 -4.9209 0.8897 31 1 0.6175 -4.9205 -0.8902 32 1 4.5655 -7.4692 0.0002 33 1 1.1679 -10.1230 0.0088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609496106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:14 Heat of formation + Delta-G solvation = 25.252171 kcal Electronic energy + Delta-G solvation = -22810.323435 eV Core-core repulsion = 18874.385179 eV Total energy + Delta-G solvation = -3935.938256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.51923 -42.49956 -41.11630 -39.86377 -37.29025 -35.96782 -35.46832 -34.47501 -33.36729 -32.63179 -30.78016 -29.68424 -26.67855 -25.68413 -25.20120 -24.35972 -21.95238 -21.36798 -20.97567 -20.35779 -20.01613 -19.20019 -18.27340 -18.22534 -17.65700 -17.57340 -16.90035 -16.25161 -15.83251 -15.72944 -15.62810 -15.24792 -15.08177 -14.67790 -14.40956 -13.82497 -13.71107 -13.51519 -13.37070 -13.30010 -12.90302 -12.48691 -12.42959 -12.26352 -12.09433 -12.09235 -11.75746 -11.70041 -11.52417 -10.44402 -10.28022 -10.07086 -9.32606 -8.48017 -5.98339 -0.12763 0.31319 0.44898 1.30153 1.39419 1.41699 1.49310 1.60629 1.67382 1.82148 1.92343 2.24123 2.33386 2.69096 3.16838 3.17870 3.25262 3.77621 4.00011 4.06902 4.17177 4.25230 4.28407 4.29373 4.35444 4.65247 4.92354 5.33561 5.40705 5.44725 5.52560 5.58289 5.93877 6.28481 6.51392 6.81261 7.04609 7.07364 7.45466 7.98363 8.69056 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.053976 B = 0.002121 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.620099 B =13195.657904 C =13699.131641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.999 3.001 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.441 3.559 11 O -0.614 6.614 12 C 0.072 3.928 13 O -0.336 6.336 14 C 0.536 3.464 15 O -0.544 6.544 16 C -0.245 4.245 17 C 0.137 3.863 18 N -0.503 5.503 19 H 0.445 0.555 20 C 0.059 3.941 21 C 0.242 3.758 22 N -0.288 5.288 23 N -0.051 5.051 24 N -0.195 5.195 25 H 0.496 0.504 26 N -0.297 5.297 27 C -0.068 4.068 28 H 0.280 0.720 29 H 0.399 0.601 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.219 0.781 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.767 -25.600 -0.008 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.464 4.464 8 H 0.104 0.896 9 N -0.198 5.198 10 C 0.227 3.773 11 O -0.501 6.501 12 C -0.005 4.005 13 O -0.252 6.252 14 C 0.383 3.617 15 O -0.435 6.435 16 C -0.253 4.253 17 C -0.006 4.006 18 N -0.098 5.098 19 H 0.287 0.713 20 C -0.053 4.053 21 C -0.038 4.038 22 N -0.160 5.160 23 N -0.046 5.046 24 N -0.046 5.046 25 H 0.356 0.644 26 N -0.151 5.151 27 C -0.095 4.095 28 H 0.089 0.911 29 H 0.234 0.766 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.236 0.764 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.974 -26.219 -0.001 28.052 hybrid contribution 0.258 0.749 -0.009 0.792 sum 10.232 -25.470 -0.009 27.449 Atomic orbital electron populations 1.69681 1.06980 1.29625 1.49411 1.26141 0.96584 1.02646 0.95844 0.84843 0.77900 0.76363 0.78718 1.19533 1.19653 1.19410 1.19729 0.92981 0.83325 1.50403 0.89559 1.41752 1.09578 1.04233 1.64224 1.20063 0.88087 0.85257 0.83864 1.90506 1.15236 1.87696 1.56621 1.22488 0.90267 0.82482 1.05266 1.86569 1.40047 1.14436 1.84101 1.20620 0.86828 0.82556 0.71667 1.90810 1.17123 1.86932 1.48668 1.18552 0.92938 0.90470 1.23296 1.23015 0.93940 0.87894 0.95798 1.41548 1.09545 1.04556 1.54174 0.71303 1.16214 0.87529 0.83492 1.18053 1.22405 0.85068 0.94001 1.02374 1.76187 1.26236 0.94612 1.18965 1.78922 0.93552 1.17212 1.14872 1.47722 1.06186 1.07103 1.43592 0.64410 1.74913 1.25657 0.91551 1.22930 1.20925 0.98403 0.89872 1.00308 0.91074 0.76626 0.87767 0.87773 0.76427 0.82732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.85 13.05 21.66 0.28 -48.56 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 3 Si 1.00 41.86 29.55 68.60 2.03 43.89 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.34 -18.67 9.68 84.04 0.81 -17.86 16 8 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 9 N -0.56 -28.64 5.29 -306.98 -1.62 -30.26 16 10 C 0.44 21.26 7.86 87.66 0.69 21.95 16 11 O -0.61 -33.86 16.08 15.72 0.25 -33.61 16 12 C 0.07 2.75 5.95 71.24 0.42 3.17 16 13 O -0.34 -12.31 9.59 -50.60 -0.49 -12.79 16 14 C 0.54 17.81 7.95 70.17 0.56 18.37 16 15 O -0.54 -20.50 16.72 19.72 0.33 -20.17 16 16 C -0.25 -6.29 6.14 -20.09 -0.12 -6.41 16 17 C 0.14 2.44 11.77 84.17 0.99 3.43 16 18 N -0.50 -6.85 6.01 -182.97 -1.10 -7.95 16 19 H 0.44 3.02 8.96 -92.71 -0.83 2.19 16 20 C 0.06 1.12 7.08 40.28 0.29 1.41 16 21 C 0.24 4.46 8.20 137.15 1.12 5.59 16 22 N -0.29 -6.04 12.52 -52.37 -0.66 -6.70 16 23 N -0.05 -0.80 13.46 37.02 0.50 -0.30 16 24 N -0.19 -1.71 7.90 37.02 0.29 -1.42 16 25 H 0.50 -0.79 8.96 -347.52 -3.11 -3.90 16 26 N -0.30 -3.92 12.41 -52.33 -0.65 -4.57 16 27 C -0.07 -1.61 10.59 22.60 0.24 -1.37 16 28 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 29 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 30 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 31 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 32 H 0.22 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -77.34 318.30 1.20 -76.14 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -3.43 Total: 18.17 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: 5.47 Total: 28.13 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -2.95 Total: -99.75 kcal Atomic # 8 Polarization: -66.67 SS G_CDS: 0.10 Total: -66.57 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -77.34 1.20 -76.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.391 kcal (2) G-P(sol) polarization free energy of solvation -77.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds