Wall clock time and date at job start Fri Apr 10 2020 17:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47594 * 2 1 4 4 C 1.50699 * 109.47215 * 120.00083 * 2 1 3 5 5 H 1.07994 * 120.00234 * 119.99661 * 4 2 1 6 6 C 1.37879 * 119.99687 * 299.99677 * 4 2 1 7 7 N 1.31521 * 120.00275 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99964 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46708 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47008 * 120.00339 * 8 6 4 11 11 H 1.48498 * 109.47077 * 240.00397 * 8 6 4 12 12 N 1.46500 * 109.46958 * 240.00034 * 2 1 3 13 13 C 1.46506 * 119.99856 * 299.99647 * 12 2 1 14 14 S 1.65597 * 120.00155 * 120.00271 * 12 2 1 15 15 O 1.42098 * 106.40482 * 336.45778 * 14 12 2 16 16 O 1.42101 * 106.40267 * 203.53542 * 14 12 2 17 17 N 1.65602 * 107.21817 * 89.99944 * 14 12 2 18 18 C 1.46503 * 120.00436 * 64.99882 * 17 14 12 19 19 C 1.50699 * 109.47248 * 164.99812 * 18 17 14 20 20 N 1.31700 * 126.18263 * 275.18945 * 19 18 17 21 21 C 1.34346 * 105.81682 * 180.22685 * 20 19 18 22 22 O 1.21897 * 126.56514 * 179.77935 * 21 20 19 23 23 O 1.34146 * 106.86491 * 359.75336 * 21 20 19 24 24 N 1.21340 * 109.54848 * 359.97438 * 23 21 20 25 25 H 0.97001 * 124.93126 * 179.97438 * 24 23 21 26 26 H 1.09002 * 109.46716 * 300.00515 * 1 2 3 27 27 H 1.08999 * 109.46641 * 59.99755 * 1 2 3 28 28 H 1.08995 * 109.47145 * 180.02562 * 1 2 3 29 29 H 0.96999 * 119.99986 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47590 * 270.00008 * 13 12 2 31 31 H 1.08998 * 109.46584 * 30.00565 * 13 12 2 32 32 H 1.09005 * 109.46740 * 150.00275 * 13 12 2 33 33 H 0.97004 * 119.99532 * 244.99659 * 17 14 12 34 34 H 1.09000 * 109.46889 * 45.00038 * 18 17 14 35 35 H 1.08993 * 109.47134 * 285.00619 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.1454 -2.2876 3.6038 10 1 3.1466 -0.1873 4.8165 11 1 1.1661 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9704 0.1141 -2.2862 15 8 2.6905 1.4972 -2.1194 16 8 2.8228 -0.5647 -3.5259 17 7 4.5438 -0.1044 -1.8180 18 6 5.1358 -1.4443 -1.8415 19 6 6.6349 -1.3330 -1.7351 20 7 7.4721 -1.1300 -2.7313 21 6 8.6973 -1.1061 -2.1808 22 8 9.7538 -0.9450 -2.7671 23 8 8.5354 -1.2930 -0.8624 24 7 7.3547 -1.4186 -0.6121 25 1 6.9872 -1.5648 0.2736 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7082 1.1610 3.4844 30 1 2.4157 -2.7378 -0.9717 31 1 0.6904 -2.3002 -0.9846 32 1 1.6238 -2.2853 -2.5002 33 1 5.0734 0.6549 -1.5282 34 1 4.8737 -1.9409 -2.7756 35 1 4.7540 -2.0249 -1.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647201817.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:25 Heat of formation + Delta-G solvation = -25.653809 kcal Electronic energy + Delta-G solvation = -23945.529136 eV Core-core repulsion = 20110.534632 eV Total energy + Delta-G solvation = -3834.994504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.89648 -38.23664 -37.25154 -36.82003 -36.34922 -35.47989 -34.54854 -32.78928 -32.54730 -29.24826 -27.63471 -25.75187 -25.32186 -24.27463 -22.54808 -20.98057 -20.32056 -19.34074 -18.67795 -17.67093 -17.22939 -16.67747 -16.54694 -16.42799 -15.93518 -15.29811 -14.60298 -14.25695 -13.92664 -13.84831 -13.65323 -13.36962 -12.97683 -12.36824 -12.14455 -11.97995 -11.93339 -11.72769 -11.67526 -11.53096 -11.33302 -11.19074 -11.00176 -10.82842 -10.61021 -10.42309 -10.24848 -9.81368 -9.39983 -9.39171 -8.66175 -8.18806 -6.26641 -4.36670 0.46503 1.03838 1.50018 2.58379 2.85129 3.08336 3.14808 3.19106 3.24697 3.56472 3.90888 4.17622 4.27732 4.71358 4.94198 4.97047 5.04101 5.36177 5.40575 5.56008 5.95896 6.06816 6.15180 6.46051 6.66478 6.69913 6.81177 6.95362 7.29803 7.29991 7.44526 7.61432 7.65287 7.87253 8.07795 8.66017 9.30486 10.78216 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.005316 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.776976 B = 5265.513809 C = 6692.745610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.060 0.940 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.987 5.987 13 C 0.094 3.906 14 S 2.784 3.216 15 O -0.969 6.969 16 O -0.988 6.988 17 N -1.124 6.124 18 C 0.192 3.808 19 C 0.350 3.650 20 N -0.536 5.536 21 C 0.556 3.444 22 O -0.471 6.471 23 O -0.080 6.080 24 N -0.490 5.490 25 H 0.476 0.524 26 H 0.093 0.907 27 H 0.014 0.986 28 H 0.034 0.966 29 H 0.265 0.735 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.418 0.582 34 H 0.128 0.872 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.961 -6.798 -2.505 8.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.078 0.922 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.209 1.209 12 N -0.831 5.831 13 C -0.052 4.052 14 S 2.792 3.208 15 O -0.953 6.953 16 O -0.971 6.971 17 N -0.883 5.883 18 C 0.064 3.936 19 C 0.078 3.922 20 N -0.298 5.298 21 C 0.305 3.695 22 O -0.351 6.351 23 O -0.102 6.102 24 N -0.157 5.157 25 H 0.330 0.670 26 H 0.112 0.888 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.252 0.748 34 H 0.146 0.854 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.360 -6.150 -4.103 9.131 hybrid contribution 0.842 -0.479 2.626 2.798 sum 6.201 -6.628 -1.478 9.196 Atomic orbital electron populations 1.22072 0.97857 0.99734 1.00981 1.18786 0.92039 0.92783 0.80058 0.92196 1.21354 1.32322 1.13071 0.90072 0.91930 1.24945 0.94952 0.94928 0.99036 1.69881 1.35840 1.22469 1.23892 0.86497 0.78736 0.79362 0.82989 1.19937 1.21051 1.20908 1.57732 1.63772 1.21668 1.39925 1.21354 1.02217 0.81444 1.00201 1.01923 0.72154 0.73434 0.73293 1.93632 1.82904 1.32032 1.86707 1.93565 1.85501 1.76285 1.41748 1.56247 1.32938 1.13115 1.86002 1.19913 0.80291 0.86843 1.06601 1.25448 0.98081 0.86653 0.81981 1.73455 0.99208 1.31930 1.25218 1.21966 0.90689 0.80044 0.76801 1.91178 1.29470 1.53711 1.60721 1.85271 1.09796 1.79960 1.35220 1.42644 0.96089 1.64718 1.12275 0.66983 0.88838 0.96688 0.94710 0.92531 0.93813 0.90304 0.91691 0.74819 0.85422 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.95 37.16 0.33 -2.79 16 2 C 0.27 5.62 2.62 -69.08 -0.18 5.43 16 3 H 0.06 1.43 6.91 -51.93 -0.36 1.07 16 4 C -0.53 -11.61 8.37 -34.44 -0.29 -11.90 16 5 H 0.06 1.28 7.65 -52.49 -0.40 0.87 16 6 C 0.06 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.88 -22.20 11.32 55.43 0.63 -21.57 16 8 Si 0.90 18.08 29.54 -169.99 -5.02 13.06 16 9 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 N -0.99 -16.64 3.12 -115.85 -0.36 -17.00 16 13 C 0.09 1.30 9.90 59.85 0.59 1.89 16 14 S 2.78 44.89 6.14 -107.50 -0.66 44.23 16 15 O -0.97 -19.38 16.70 -57.17 -0.95 -20.33 16 16 O -0.99 -16.99 16.21 -57.17 -0.93 -17.92 16 17 N -1.12 -13.41 6.05 -11.66 -0.07 -13.48 16 18 C 0.19 1.72 6.87 -5.19 -0.04 1.68 16 19 C 0.35 3.40 7.62 -155.65 -1.19 2.22 16 20 N -0.54 -7.32 11.55 -14.52 -0.17 -7.49 16 21 C 0.56 8.19 9.62 53.45 0.51 8.71 16 22 O -0.47 -8.59 18.07 -19.16 -0.35 -8.94 16 23 O -0.08 -0.88 11.35 -7.39 -0.08 -0.97 16 24 N -0.49 -3.81 6.79 32.13 0.22 -3.59 16 25 H 0.48 1.88 8.96 -40.82 -0.37 1.51 16 26 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 29 H 0.26 6.39 8.31 -40.82 -0.34 6.05 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.14 6.43 -51.93 -0.33 0.80 16 32 H 0.06 0.81 7.02 -51.93 -0.36 0.45 16 33 H 0.42 4.57 8.65 -34.47 -0.30 4.28 16 34 H 0.13 1.08 7.75 -51.93 -0.40 0.68 16 35 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 316.24 15.07 4.77 4.77 Total: -1.00 -33.33 316.24 -6.92 -40.25 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.59 Total: 2.32 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -0.35 Total: 6.66 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: 0.25 Total: -63.13 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -2.31 Total: -48.15 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.06 kcal Atomic # 16 Polarization: 44.89 SS G_CDS: -0.66 Total: 44.23 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.33 -6.92 -40.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647201817.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.596 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds