Wall clock time and date at job start Fri Apr 10 2020 17:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47594 * 2 1 4 4 C 1.50699 * 109.47215 * 120.00083 * 2 1 3 5 5 H 1.07994 * 120.00234 * 119.99661 * 4 2 1 6 6 C 1.37879 * 119.99687 * 299.99677 * 4 2 1 7 7 N 1.31521 * 120.00275 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99964 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46708 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47008 * 120.00339 * 8 6 4 11 11 H 1.48498 * 109.47077 * 240.00397 * 8 6 4 12 12 N 1.46500 * 109.46958 * 240.00034 * 2 1 3 13 13 C 1.46506 * 119.99856 * 299.99647 * 12 2 1 14 14 S 1.65597 * 120.00155 * 120.00271 * 12 2 1 15 15 O 1.42098 * 106.40482 * 336.45778 * 14 12 2 16 16 O 1.42101 * 106.40267 * 203.53542 * 14 12 2 17 17 N 1.65602 * 107.21817 * 89.99944 * 14 12 2 18 18 C 1.46503 * 120.00436 * 64.99882 * 17 14 12 19 19 C 1.50699 * 109.47248 * 164.99812 * 18 17 14 20 20 N 1.31700 * 126.18263 * 275.18945 * 19 18 17 21 21 C 1.34346 * 105.81682 * 180.22685 * 20 19 18 22 22 O 1.21897 * 126.56514 * 179.77935 * 21 20 19 23 23 O 1.34146 * 106.86491 * 359.75336 * 21 20 19 24 24 N 1.21340 * 109.54848 * 359.97438 * 23 21 20 25 25 H 0.97001 * 124.93126 * 179.97438 * 24 23 21 26 26 H 1.09002 * 109.46716 * 300.00515 * 1 2 3 27 27 H 1.08999 * 109.46641 * 59.99755 * 1 2 3 28 28 H 1.08995 * 109.47145 * 180.02562 * 1 2 3 29 29 H 0.96999 * 119.99986 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47590 * 270.00008 * 13 12 2 31 31 H 1.08998 * 109.46584 * 30.00565 * 13 12 2 32 32 H 1.09005 * 109.46740 * 150.00275 * 13 12 2 33 33 H 0.97004 * 119.99532 * 244.99659 * 17 14 12 34 34 H 1.09000 * 109.46889 * 45.00038 * 18 17 14 35 35 H 1.08993 * 109.47134 * 285.00619 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.1454 -2.2876 3.6038 10 1 3.1466 -0.1873 4.8165 11 1 1.1661 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9704 0.1141 -2.2862 15 8 2.6905 1.4972 -2.1194 16 8 2.8228 -0.5647 -3.5259 17 7 4.5438 -0.1044 -1.8180 18 6 5.1358 -1.4443 -1.8415 19 6 6.6349 -1.3330 -1.7351 20 7 7.4721 -1.1300 -2.7313 21 6 8.6973 -1.1061 -2.1808 22 8 9.7538 -0.9450 -2.7671 23 8 8.5354 -1.2930 -0.8624 24 7 7.3547 -1.4186 -0.6121 25 1 6.9872 -1.5648 0.2736 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7082 1.1610 3.4844 30 1 2.4157 -2.7378 -0.9717 31 1 0.6904 -2.3002 -0.9846 32 1 1.6238 -2.2853 -2.5002 33 1 5.0734 0.6549 -1.5282 34 1 4.8737 -1.9409 -2.7756 35 1 4.7540 -2.0249 -1.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647201817.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:24 Heat of formation + Delta-G solvation = -55.370063 kcal Electronic energy + Delta-G solvation = -23946.817730 eV Core-core repulsion = 20110.534632 eV Total energy + Delta-G solvation = -3836.283098 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.80114 -39.36991 -38.39913 -38.00289 -37.78161 -36.87399 -35.54089 -34.42167 -33.47046 -30.82495 -28.51402 -27.20980 -26.84987 -25.20525 -23.47596 -22.53914 -21.14139 -20.50655 -19.65811 -18.87232 -18.51100 -18.18951 -17.82875 -17.49161 -17.05816 -16.69689 -16.00097 -15.20853 -15.07034 -14.97964 -14.85259 -14.54607 -14.46502 -13.58301 -13.43037 -13.34824 -13.15917 -13.11760 -12.94471 -12.85434 -12.80364 -12.68272 -12.52058 -12.15196 -12.04639 -11.91797 -11.78508 -11.08984 -10.68255 -10.43141 -10.38480 -9.58702 -8.00867 -6.15517 -0.55307 -0.10076 0.68408 1.51237 1.52077 1.56095 1.63935 1.88661 2.09757 2.52398 2.61046 2.76672 3.29561 3.42546 3.53756 4.14992 4.22689 4.30080 4.50703 4.53527 4.86612 4.96947 5.04853 5.15868 5.27356 5.32504 5.42346 5.68508 5.74072 5.90786 5.98067 6.17944 6.23391 6.37581 6.71846 6.95849 7.55102 9.03772 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.005316 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.776976 B = 5265.513809 C = 6692.745610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.271 3.729 3 H 0.027 0.973 4 C -0.519 4.519 5 H 0.086 0.914 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.248 1.248 10 H -0.294 1.294 11 H -0.296 1.296 12 N -0.991 5.991 13 C 0.084 3.916 14 S 2.806 3.194 15 O -1.013 7.013 16 O -0.998 6.998 17 N -1.119 6.119 18 C 0.185 3.815 19 C 0.365 3.635 20 N -0.567 5.567 21 C 0.551 3.449 22 O -0.520 6.520 23 O -0.071 6.071 24 N -0.463 5.463 25 H 0.495 0.505 26 H 0.065 0.935 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.259 0.741 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.424 0.576 34 H 0.139 0.861 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.466 -9.136 -1.853 10.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.167 3.833 3 H 0.044 0.956 4 C -0.558 4.558 5 H 0.104 0.896 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.171 1.171 10 H -0.220 1.220 11 H -0.223 1.223 12 N -0.833 5.833 13 C -0.061 4.061 14 S 2.814 3.186 15 O -0.998 6.998 16 O -0.981 6.981 17 N -0.881 5.881 18 C 0.058 3.942 19 C 0.094 3.906 20 N -0.331 5.331 21 C 0.301 3.699 22 O -0.404 6.404 23 O -0.092 6.092 24 N -0.130 5.130 25 H 0.355 0.645 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.259 0.741 34 H 0.156 0.844 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.831 -8.538 -3.405 10.885 hybrid contribution 0.627 0.214 2.418 2.507 sum 6.458 -8.324 -0.987 10.582 Atomic orbital electron populations 1.21987 0.98466 1.00160 0.99749 1.18427 0.91625 0.91648 0.81627 0.95568 1.21724 1.31217 1.13018 0.89853 0.89571 1.25716 0.95417 0.95546 1.01999 1.70046 1.37828 1.24407 1.23973 0.85547 0.77815 0.78882 0.79476 1.17095 1.22037 1.22293 1.57536 1.64486 1.22882 1.38409 1.21637 1.02970 0.79953 1.01535 1.01028 0.72625 0.72075 0.72861 1.93573 1.84072 1.34919 1.87186 1.93551 1.86096 1.76210 1.42205 1.55822 1.31568 1.14881 1.85811 1.20355 0.79254 0.85462 1.09160 1.25441 0.98061 0.85521 0.81555 1.73426 0.99306 1.33556 1.26779 1.21976 0.90457 0.80101 0.77411 1.91130 1.30995 1.56284 1.62034 1.85262 1.11123 1.79099 1.33764 1.42829 0.94891 1.62462 1.12848 0.64524 0.91589 0.96476 0.93366 0.93161 0.90471 0.91069 0.90285 0.74072 0.84376 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.10 8.95 71.98 0.64 -5.46 16 2 C 0.27 11.16 2.62 44.25 0.12 11.27 16 3 H 0.03 1.27 6.91 -2.39 -0.02 1.26 16 4 C -0.52 -21.51 8.37 25.60 0.21 -21.30 16 5 H 0.09 3.09 7.65 -2.91 -0.02 3.07 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -46.87 11.32 21.45 0.24 -46.62 16 8 Si 0.96 35.59 29.54 68.60 2.03 37.62 16 9 H -0.25 -8.06 7.11 99.48 0.71 -7.35 16 10 H -0.29 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.30 -11.58 7.11 99.48 0.71 -10.87 16 12 N -0.99 -31.02 3.12 -520.43 -1.62 -32.64 16 13 C 0.08 2.00 9.90 127.77 1.27 3.27 16 14 S 2.81 85.54 6.14 -56.49 -0.35 85.19 16 15 O -1.01 -40.51 16.70 -128.00 -2.14 -42.64 16 16 O -1.00 -32.07 16.21 -128.00 -2.07 -34.14 16 17 N -1.12 -23.56 6.05 -190.79 -1.15 -24.71 16 18 C 0.18 2.52 6.87 85.63 0.59 3.11 16 19 C 0.37 5.91 7.62 138.21 1.05 6.97 16 20 N -0.57 -14.52 11.55 -431.18 -4.98 -19.50 16 21 C 0.55 15.73 9.62 130.00 1.25 16.98 16 22 O -0.52 -19.23 18.07 18.13 0.33 -18.90 16 23 O -0.07 -1.38 11.35 93.22 1.06 -0.33 16 24 N -0.46 -5.52 6.79 -53.62 -0.36 -5.88 16 25 H 0.50 1.59 8.96 -92.71 -0.83 0.76 16 26 H 0.07 3.18 6.07 -2.39 -0.01 3.17 16 27 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 1.85 6.66 -2.39 -0.02 1.83 16 29 H 0.26 12.78 8.31 -92.71 -0.77 12.01 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.83 6.43 -2.39 -0.02 1.81 16 32 H 0.08 1.68 7.02 -2.38 -0.02 1.66 16 33 H 0.42 8.32 8.65 -96.74 -0.84 7.49 16 34 H 0.14 1.74 7.75 -2.39 -0.02 1.72 16 35 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -73.96 316.24 -3.94 -77.90 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -0.50 Total: 8.79 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 5.58 Total: 15.87 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -7.88 Total: -129.36 kcal Atomic # 8 Polarization: -93.19 SS G_CDS: -2.83 Total: -96.01 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Atomic # 16 Polarization: 85.54 SS G_CDS: -0.35 Total: 85.19 kcal Total: -73.96 -3.94 -77.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647201817.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.532 kcal (2) G-P(sol) polarization free energy of solvation -73.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds