Wall clock time and date at job start Fri Apr 10 2020 17:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.50700 * 109.47412 * 164.99847 * 18 17 14 20 20 N 1.31699 * 126.18055 * 274.68827 * 19 18 17 21 21 C 1.34348 * 105.81789 * 179.85368 * 20 19 18 22 22 O 1.21893 * 126.56744 * 180.18474 * 21 20 19 23 23 O 1.34147 * 106.86342 * 0.40560 * 21 20 19 24 24 N 1.21337 * 109.54873 * 359.74513 * 23 21 20 25 25 H 0.97002 * 124.93541 * 179.97438 * 24 23 21 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 31 31 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 32 32 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 33 33 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 34 34 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 35 35 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6167 0.7951 5.4204 20 7 1.2431 1.0639 6.5473 21 6 0.4013 1.8305 7.2604 22 8 0.6053 2.2969 8.3679 23 8 -0.7087 1.9803 6.5221 24 7 -0.5808 1.3868 5.4716 25 1 -1.2503 1.3471 4.7708 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7088 1.1611 -3.4845 30 1 2.4158 -2.7376 0.9718 31 1 1.6238 -2.2851 2.5003 32 1 0.6905 -2.3002 0.9847 33 1 1.9053 1.7753 3.4681 34 1 0.3187 -0.4565 3.7178 35 1 1.7669 -0.8422 4.6782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647201818.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:28 Heat of formation + Delta-G solvation = -23.354783 kcal Electronic energy + Delta-G solvation = -23767.681898 eV Core-core repulsion = 19932.787087 eV Total energy + Delta-G solvation = -3834.894811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.99111 -38.32728 -37.34204 -36.82234 -36.36119 -35.44579 -34.65735 -32.72303 -32.65691 -29.28187 -27.73866 -25.79260 -25.27013 -24.37350 -22.65686 -21.01841 -20.42894 -19.34132 -18.75118 -17.73802 -17.25231 -16.93914 -16.50978 -16.33261 -15.94872 -15.28555 -14.58627 -14.34741 -14.01121 -13.93815 -13.63899 -13.35639 -12.98514 -12.45433 -12.16388 -12.03219 -11.93034 -11.72270 -11.67534 -11.52031 -11.40609 -11.09640 -10.92522 -10.91533 -10.65310 -10.43719 -10.17756 -9.87204 -9.49575 -9.42131 -8.56934 -8.19201 -6.19170 -4.25997 0.36773 0.97697 1.38872 2.50212 2.74014 3.21861 3.23261 3.28453 3.32094 3.45755 3.89325 4.15616 4.31002 4.69198 4.77577 4.87749 5.12920 5.25666 5.30451 5.44993 5.92718 5.95751 6.18437 6.43473 6.52169 6.58660 6.67734 6.82797 7.21141 7.25695 7.46873 7.55166 7.63954 7.89250 8.12995 8.76185 9.40758 10.86468 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.028145 B = 0.003772 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.620304 B = 7421.335760 C = 7840.141078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.267 3.733 3 H 0.060 0.940 4 C -0.523 4.523 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.275 1.275 11 H -0.277 1.277 12 N -0.988 5.988 13 C 0.104 3.896 14 S 2.779 3.221 15 O -0.984 6.984 16 O -0.961 6.961 17 N -1.130 6.130 18 C 0.191 3.809 19 C 0.348 3.652 20 N -0.534 5.534 21 C 0.556 3.444 22 O -0.468 6.468 23 O -0.081 6.081 24 N -0.492 5.492 25 H 0.474 0.526 26 H 0.008 0.992 27 H 0.094 0.906 28 H 0.035 0.965 29 H 0.265 0.735 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.418 0.582 34 H 0.104 0.896 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 -2.523 9.883 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.164 3.836 3 H 0.078 0.922 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.831 5.831 13 C -0.042 4.042 14 S 2.787 3.213 15 O -0.967 6.967 16 O -0.945 6.945 17 N -0.888 5.888 18 C 0.062 3.938 19 C 0.077 3.923 20 N -0.296 5.296 21 C 0.306 3.694 22 O -0.348 6.348 23 O -0.103 6.103 24 N -0.159 5.159 25 H 0.328 0.672 26 H 0.028 0.972 27 H 0.112 0.888 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.251 0.749 34 H 0.122 0.878 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.667 -2.243 10.868 12.460 hybrid contribution -1.210 0.282 -1.234 1.751 sum -6.876 -1.962 9.633 11.997 Atomic orbital electron populations 1.22137 0.98249 0.99773 1.00602 1.18779 0.91255 0.93097 0.80467 0.92196 1.21273 1.31864 1.13160 0.89933 0.91872 1.24900 0.94863 0.94963 0.99059 1.69829 1.36383 1.22632 1.24049 0.86541 0.79441 0.79551 0.81796 1.21224 1.20092 1.20208 1.57757 1.70131 1.19782 1.35469 1.21235 1.02159 0.82023 0.98770 1.02166 0.73459 0.73354 0.72321 1.93574 1.68382 1.60374 1.74386 1.93653 1.73464 1.56060 1.71301 1.56476 1.62562 1.17671 1.52137 1.19925 0.97170 0.91405 0.85273 1.25442 0.82129 0.89248 0.95505 1.73469 1.27420 1.23795 1.04870 1.21956 0.77374 0.82576 0.87540 1.91187 1.74660 1.53867 1.15051 1.85276 1.44808 1.60942 1.19253 1.42590 1.18536 1.44036 1.10753 0.67166 0.97248 0.88778 0.94600 0.92557 0.92837 0.93235 0.90709 0.74884 0.87803 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.95 37.16 0.33 -2.46 16 2 C 0.27 5.65 2.62 -69.09 -0.18 5.47 16 3 H 0.06 1.43 6.91 -51.92 -0.36 1.07 16 4 C -0.52 -12.84 8.37 -34.44 -0.29 -13.13 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -23.03 11.32 55.43 0.63 -22.40 16 8 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 9 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 N -0.99 -16.72 3.12 -115.86 -0.36 -17.08 16 13 C 0.10 1.45 9.53 59.85 0.57 2.02 16 14 S 2.78 44.99 6.09 -107.50 -0.66 44.34 16 15 O -0.98 -17.40 16.68 -57.17 -0.95 -18.35 16 16 O -0.96 -19.80 16.70 -57.17 -0.95 -20.75 16 17 N -1.13 -12.20 6.05 -11.65 -0.07 -12.27 16 18 C 0.19 1.44 6.87 -5.19 -0.04 1.41 16 19 C 0.35 2.93 7.62 -155.64 -1.19 1.74 16 20 N -0.53 -6.80 11.55 -14.52 -0.17 -6.97 16 21 C 0.56 7.65 9.62 53.45 0.51 8.17 16 22 O -0.47 -8.16 18.07 -19.16 -0.35 -8.50 16 23 O -0.08 -0.78 11.35 -7.39 -0.08 -0.86 16 24 N -0.49 -3.01 6.79 32.13 0.22 -2.79 16 25 H 0.47 0.83 8.96 -40.82 -0.37 0.47 16 26 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 28 H 0.03 0.63 6.66 -51.93 -0.35 0.28 16 29 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.50 7.79 -51.93 -0.40 0.10 16 32 H 0.07 0.98 6.43 -51.93 -0.33 0.65 16 33 H 0.42 4.02 8.64 -34.47 -0.30 3.72 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.13 0.97 7.75 -51.93 -0.40 0.57 16 LS Contribution 317.06 15.07 4.78 4.78 Total: -1.00 -35.44 317.06 -6.99 -42.42 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -3.63 Total: -1.21 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -0.37 Total: 4.77 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.25 Total: -61.51 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -2.34 Total: -48.47 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 44.99 SS G_CDS: -0.66 Total: 44.34 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.44 -6.99 -42.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647201818.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.070 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds