Wall clock time and date at job start Fri Apr 10 2020 17:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.50700 * 109.47412 * 164.99847 * 18 17 14 20 20 N 1.31699 * 126.18055 * 274.68827 * 19 18 17 21 21 C 1.34348 * 105.81789 * 179.85368 * 20 19 18 22 22 O 1.21893 * 126.56744 * 180.18474 * 21 20 19 23 23 O 1.34147 * 106.86342 * 0.40560 * 21 20 19 24 24 N 1.21337 * 109.54873 * 359.74513 * 23 21 20 25 25 H 0.97002 * 124.93541 * 179.97438 * 24 23 21 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 31 31 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 32 32 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 33 33 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 34 34 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 35 35 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6167 0.7951 5.4204 20 7 1.2431 1.0639 6.5473 21 6 0.4013 1.8305 7.2604 22 8 0.6053 2.2969 8.3679 23 8 -0.7087 1.9803 6.5221 24 7 -0.5808 1.3868 5.4716 25 1 -1.2503 1.3471 4.7708 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7088 1.1611 -3.4845 30 1 2.4158 -2.7376 0.9718 31 1 1.6238 -2.2851 2.5003 32 1 0.6905 -2.3002 0.9847 33 1 1.9053 1.7753 3.4681 34 1 0.3187 -0.4565 3.7178 35 1 1.7669 -0.8422 4.6782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647201818.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:27 Heat of formation + Delta-G solvation = -55.636163 kcal Electronic energy + Delta-G solvation = -23769.081723 eV Core-core repulsion = 19932.787087 eV Total energy + Delta-G solvation = -3836.294637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.79193 -39.37276 -38.40260 -38.02583 -37.77767 -36.86057 -35.57201 -34.46295 -33.48001 -30.81905 -28.52758 -27.18646 -26.88639 -25.20502 -23.48664 -22.54093 -21.14082 -20.46777 -19.65605 -18.92041 -18.51029 -18.39856 -17.69040 -17.47475 -17.05988 -16.72620 -16.03277 -15.21150 -15.09148 -14.99709 -14.83370 -14.64172 -14.36587 -13.70278 -13.42093 -13.29416 -13.13349 -13.07179 -12.94399 -12.91244 -12.80951 -12.72047 -12.50520 -12.18996 -12.06161 -11.91658 -11.81981 -11.06687 -10.74966 -10.43697 -10.38400 -9.61859 -8.07265 -6.18844 -0.58791 -0.11700 0.68783 1.46224 1.49165 1.52652 1.54616 1.87113 2.11946 2.47168 2.62057 2.76752 3.22391 3.41609 3.52834 4.08446 4.21735 4.29791 4.49796 4.50640 4.80898 4.96990 5.11184 5.17552 5.24865 5.35573 5.44743 5.69688 5.71713 5.93269 5.98473 6.23788 6.24399 6.40005 6.71815 6.89314 7.50231 8.95736 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.028145 B = 0.003772 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.620304 B = 7421.335760 C = 7840.141078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.270 3.730 3 H 0.027 0.973 4 C -0.537 4.537 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.946 3.054 9 H -0.286 1.286 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.990 5.990 13 C 0.094 3.906 14 S 2.803 3.197 15 O -1.000 7.000 16 O -1.012 7.012 17 N -1.119 6.119 18 C 0.182 3.818 19 C 0.365 3.635 20 N -0.569 5.569 21 C 0.551 3.449 22 O -0.521 6.521 23 O -0.070 6.070 24 N -0.461 5.461 25 H 0.496 0.504 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.262 0.738 30 H 0.036 0.964 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.426 0.574 34 H 0.156 0.844 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.685 -3.799 10.097 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.045 0.955 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.772 3.228 9 H -0.212 1.212 10 H -0.209 1.209 11 H -0.191 1.191 12 N -0.833 5.833 13 C -0.051 4.051 14 S 2.811 3.189 15 O -0.983 6.983 16 O -0.996 6.996 17 N -0.882 5.882 18 C 0.055 3.945 19 C 0.093 3.907 20 N -0.333 5.333 21 C 0.301 3.699 22 O -0.405 6.405 23 O -0.092 6.092 24 N -0.129 5.129 25 H 0.356 0.644 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.261 0.739 34 H 0.173 0.827 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.320 -3.556 11.015 13.695 hybrid contribution -0.738 0.634 -1.302 1.625 sum -8.058 -2.921 9.713 12.954 Atomic orbital electron populations 1.21922 0.96037 1.00662 1.01024 1.18445 0.92788 0.91310 0.80845 0.95504 1.21677 1.31395 1.12968 0.91646 0.92641 1.25516 0.95362 0.95686 1.01330 1.69943 1.37344 1.23571 1.24192 0.85805 0.78359 0.79213 0.79391 1.21162 1.20887 1.19147 1.57546 1.70033 1.21086 1.34644 1.21512 1.02058 0.79833 1.01683 1.01152 0.73285 0.72284 0.72175 1.93553 1.69214 1.60976 1.74541 1.93585 1.75232 1.57791 1.72984 1.55883 1.62528 1.18354 1.51408 1.20429 0.98640 0.90558 0.84884 1.25419 0.82150 0.88564 0.94545 1.73437 1.28365 1.24883 1.06613 1.21961 0.78006 0.82616 0.87339 1.91136 1.75941 1.56116 1.17272 1.85266 1.43469 1.60613 1.19876 1.42788 1.18411 1.41787 1.09866 0.64383 0.93020 0.92134 0.93385 0.92829 0.94532 0.88839 0.89636 0.73873 0.82694 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 8.95 71.98 0.64 -4.17 16 2 C 0.27 11.16 2.62 44.24 0.12 11.28 16 3 H 0.03 1.30 6.91 -2.38 -0.02 1.28 16 4 C -0.54 -26.24 8.37 25.60 0.21 -26.02 16 5 H 0.06 2.71 7.65 -2.91 -0.02 2.69 16 6 C 0.02 1.06 5.30 84.66 0.45 1.51 16 7 N -0.91 -47.35 11.32 21.45 0.24 -47.10 16 8 Si 0.95 40.68 29.54 68.60 2.03 42.70 16 9 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 12 N -0.99 -31.33 3.12 -520.46 -1.62 -32.96 16 13 C 0.09 2.31 9.53 127.77 1.22 3.52 16 14 S 2.80 85.97 6.09 -56.49 -0.34 85.63 16 15 O -1.00 -33.37 16.68 -128.00 -2.14 -35.50 16 16 O -1.01 -41.77 16.70 -128.00 -2.14 -43.91 16 17 N -1.12 -20.70 6.05 -190.78 -1.15 -21.85 16 18 C 0.18 1.92 6.87 85.63 0.59 2.51 16 19 C 0.36 4.86 7.62 138.21 1.05 5.91 16 20 N -0.57 -13.52 11.55 -431.18 -4.98 -18.50 16 21 C 0.55 14.68 9.62 130.00 1.25 15.93 16 22 O -0.52 -18.49 18.07 18.15 0.33 -18.16 16 23 O -0.07 -1.19 11.35 93.22 1.06 -0.13 16 24 N -0.46 -3.85 6.79 -53.62 -0.36 -4.21 16 25 H 0.50 -0.77 8.96 -92.71 -0.83 -1.60 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 2.59 6.07 -2.39 -0.01 2.57 16 28 H 0.05 1.54 6.66 -2.39 -0.02 1.52 16 29 H 0.26 13.18 8.31 -92.71 -0.77 12.41 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.44 7.79 -2.38 -0.02 1.42 16 32 H 0.09 1.92 6.43 -2.39 -0.02 1.90 16 33 H 0.43 7.04 8.64 -96.74 -0.84 6.21 16 34 H 0.16 0.17 8.14 -2.38 -0.02 0.15 16 35 H 0.14 1.43 7.75 -2.38 -0.02 1.41 16 Total: -1.00 -80.56 317.06 -4.05 -84.61 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -0.50 Total: -1.10 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 5.53 Total: 10.49 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -7.88 Total: -124.63 kcal Atomic # 8 Polarization: -94.82 SS G_CDS: -2.89 Total: -97.70 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.70 kcal Atomic # 16 Polarization: 85.97 SS G_CDS: -0.34 Total: 85.63 kcal Total: -80.56 -4.05 -84.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647201818.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.977 kcal (2) G-P(sol) polarization free energy of solvation -80.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds