Wall clock time and date at job start Fri Apr 10 2020 17:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.51101 * 2 1 4 4 C 1.53299 * 109.51268 * 120.10499 * 2 1 3 5 5 N 1.47150 * 108.38180 * 172.22436 * 4 2 1 6 6 S 1.65602 * 120.97861 * 129.44161 * 5 4 2 7 7 O 1.42106 * 104.27845 * 333.92806 * 6 5 4 8 8 O 1.42099 * 104.27801 * 206.06923 * 6 5 4 9 9 C 1.81407 * 104.44834 * 90.00003 * 6 5 4 10 10 C 1.53005 * 109.47018 * 180.02562 * 9 6 5 11 11 C 1.50694 * 109.46958 * 179.97438 * 10 9 6 12 12 H 1.08003 * 120.00237 * 359.72376 * 11 10 9 13 13 C 1.37879 * 119.99932 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00183 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00116 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47239 * 89.99730 * 15 13 11 17 17 H 1.48501 * 109.47037 * 209.99941 * 15 13 11 18 18 H 1.48503 * 109.47156 * 329.99825 * 15 13 11 19 19 C 1.47151 * 118.04004 * 309.71309 * 5 4 2 20 20 C 1.52884 * 108.60338 * 50.22748 * 19 5 4 21 21 H 1.08999 * 109.57783 * 187.91807 * 20 19 5 22 22 C 1.50704 * 109.40508 * 67.84245 * 20 19 5 23 23 N 1.34780 * 120.00260 * 58.50161 * 22 20 19 24 24 O 1.21281 * 119.99776 * 238.49323 * 22 20 19 25 25 O 1.42959 * 109.51135 * 239.85101 * 2 1 3 26 26 H 1.08992 * 109.47139 * 299.89427 * 1 2 3 27 27 H 1.09002 * 109.47317 * 59.89797 * 1 2 3 28 28 H 1.09002 * 109.46718 * 179.89359 * 1 2 3 29 29 H 1.08996 * 109.68094 * 52.50234 * 4 2 1 30 30 H 1.08995 * 109.67925 * 291.94729 * 4 2 1 31 31 H 1.08996 * 109.46749 * 59.99938 * 9 6 5 32 32 H 1.08996 * 109.47132 * 299.99731 * 9 6 5 33 33 H 1.08999 * 109.47189 * 59.99866 * 10 9 6 34 34 H 1.09000 * 109.46664 * 300.00271 * 10 9 6 35 35 H 0.96994 * 120.00297 * 180.02562 * 14 13 11 36 36 H 1.08995 * 109.68255 * 170.00792 * 19 5 4 37 37 H 1.08996 * 109.68243 * 290.56719 * 19 5 4 38 38 H 0.97002 * 119.99518 * 359.97438 * 23 22 20 39 39 H 0.96995 * 120.00461 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7248 1.2500 5 7 3.5012 -0.8758 1.1339 6 16 4.5065 -0.4172 2.3673 7 8 3.7779 0.5889 3.0576 8 8 5.7376 -0.1187 1.7235 9 6 4.6694 -1.9033 3.3948 10 6 5.5857 -1.6039 4.5830 11 6 5.7205 -2.8383 5.4368 12 1 5.2008 -3.7443 5.1622 13 6 6.5024 -2.8092 6.5721 14 7 7.1309 -1.7044 6.9096 15 14 6.6701 -4.3395 7.6302 16 1 7.8244 -5.1448 7.1564 17 1 6.8908 -3.9421 9.0439 18 1 5.4285 -5.1482 7.5313 19 6 4.0411 -1.4407 -0.1131 20 6 3.4312 -0.6860 -1.2946 21 1 3.7091 -1.1795 -2.2258 22 6 3.9451 0.7307 -1.3028 23 7 5.2697 0.9667 -1.3812 24 8 3.1666 1.6585 -1.2390 25 8 2.0075 -0.6768 -1.1652 26 1 -0.3633 0.5122 0.8909 27 1 -0.3634 0.5154 -0.8891 28 1 -0.3633 -1.0277 -0.0019 29 1 1.5758 -1.7074 1.3215 30 1 1.8031 -0.1391 2.1376 31 1 5.0968 -2.7108 2.8004 32 1 3.6869 -2.2019 3.7603 33 1 5.1579 -0.7965 5.1773 34 1 6.5682 -1.3051 4.2178 35 1 7.6813 -1.6840 7.7080 36 1 5.1252 -1.3288 -0.1276 37 1 3.7795 -2.4966 -0.1812 38 1 5.8924 0.2246 -1.4320 39 1 5.6005 1.8785 -1.3869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347841605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:30 Heat of formation + Delta-G solvation = -153.704838 kcal Electronic energy + Delta-G solvation = -24655.861537 eV Core-core repulsion = 20918.854667 eV Total energy + Delta-G solvation = -3737.006870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.73849 -38.08286 -36.78920 -35.59299 -35.03466 -34.01070 -33.95284 -32.76725 -31.22425 -28.93338 -26.28417 -25.63051 -24.09014 -22.08378 -21.62789 -20.28328 -18.75731 -17.98369 -17.59012 -16.83580 -16.64336 -16.40061 -15.96974 -15.80627 -15.28328 -15.01319 -14.60897 -14.52275 -14.19559 -13.91668 -13.48329 -12.91837 -12.66385 -12.55565 -12.39805 -12.15842 -12.01017 -11.83149 -11.78290 -11.69187 -11.40441 -11.12899 -11.04548 -11.02330 -10.48698 -10.44980 -10.39704 -9.92550 -9.78804 -9.61547 -9.25226 -8.67371 -8.55445 -6.17463 -4.23544 0.60592 2.39730 2.82323 3.22573 3.29148 3.31616 3.31839 3.46001 4.19089 4.31128 4.33469 4.50302 4.61732 4.66338 4.84269 4.95567 5.09731 5.17707 5.20851 5.37503 5.43032 5.52991 5.56271 5.63552 5.64921 5.85625 6.06071 6.10666 6.40238 6.40880 6.67291 6.87929 7.20774 7.22580 7.28301 7.75269 8.09492 8.11425 8.79856 9.41670 10.93533 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.025475 B = 0.003950 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.849710 B = 7086.775152 C = 7493.035024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 H 0.102 0.898 4 C 0.088 3.912 5 N -1.010 6.010 6 S 2.586 3.414 7 O -0.959 6.959 8 O -0.960 6.960 9 C -0.587 4.587 10 C 0.028 3.972 11 C -0.521 4.521 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.092 3.908 20 C 0.066 3.934 21 H 0.139 0.861 22 C 0.494 3.506 23 N -0.842 5.842 24 O -0.534 6.534 25 O -0.349 6.349 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.266 0.734 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.404 0.596 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 -0.316 -17.449 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.005 4.005 3 H 0.120 0.880 4 C -0.038 4.038 5 N -0.847 5.847 6 S 2.686 3.314 7 O -0.949 6.949 8 O -0.950 6.950 9 C -0.720 4.720 10 C -0.011 4.011 11 C -0.561 4.561 12 H 0.080 0.920 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.728 3.272 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.034 4.034 20 C 0.002 3.998 21 H 0.156 0.844 22 C 0.278 3.722 23 N -0.407 5.407 24 O -0.411 6.411 25 O -0.266 6.266 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.233 0.767 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -7.960 1.027 -17.317 19.086 hybrid contribution 0.717 -1.403 0.917 1.823 sum -7.243 -0.377 -16.400 17.932 Atomic orbital electron populations 1.21688 0.92315 1.02744 1.02932 1.22920 0.95448 0.98331 0.83804 0.88035 1.22216 0.79342 1.01820 1.00396 1.58125 1.17107 1.80269 1.29167 1.05893 0.73296 0.78027 0.74217 1.93544 1.72048 1.55285 1.74051 1.93505 1.43899 1.83871 1.73763 1.30487 1.10341 1.17868 1.13337 1.18971 0.93141 0.99317 0.89642 1.20989 1.29916 0.96771 1.08414 0.92015 1.25069 0.95302 0.96518 0.97535 1.69950 1.30533 1.26582 1.25755 0.86460 0.78581 0.82639 0.79560 1.20420 1.20957 1.19729 1.21963 0.99889 0.98374 0.83192 1.22383 0.84150 0.92544 1.00699 0.84407 1.21431 0.82994 0.92349 0.75431 1.43863 1.07450 1.12781 1.76583 1.90661 1.55584 1.45765 1.49064 1.87999 1.17294 1.76641 1.44646 0.90647 0.91530 0.91899 0.90637 0.87750 0.86184 0.86201 0.94913 0.94854 0.92469 0.87530 0.89151 0.76684 0.76556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.57 37.16 0.36 -1.04 16 2 C 0.05 0.69 2.94 -26.57 -0.08 0.61 16 3 H 0.10 1.59 5.24 -51.93 -0.27 1.32 16 4 C 0.09 1.10 5.96 -3.53 -0.02 1.08 16 5 N -1.01 -13.63 3.04 -113.30 -0.34 -13.97 16 6 S 2.59 45.36 5.47 -107.50 -0.59 44.77 16 7 O -0.96 -20.00 16.62 -57.54 -0.96 -20.96 16 8 O -0.96 -17.86 16.61 -57.54 -0.96 -18.82 16 9 C -0.59 -10.92 6.12 37.16 0.23 -10.69 16 10 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 11 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 12 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 15 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.09 0.95 5.98 -3.75 -0.02 0.92 16 20 C 0.07 0.68 3.74 -27.94 -0.10 0.58 16 21 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 22 C 0.49 6.30 6.93 -10.98 -0.08 6.22 16 23 N -0.84 -8.24 8.71 31.22 0.27 -7.97 16 24 O -0.53 -8.88 14.63 -14.32 -0.21 -9.09 16 25 O -0.35 -4.33 10.07 -55.11 -0.56 -4.88 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 1.38 6.88 -51.93 -0.36 1.02 16 31 H 0.12 1.96 8.14 -51.93 -0.42 1.53 16 32 H 0.12 2.04 8.14 -51.93 -0.42 1.61 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.11 0.99 5.99 -51.93 -0.31 0.68 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.40 2.85 8.07 -40.82 -0.33 2.52 16 39 H 0.40 3.76 8.93 -40.82 -0.36 3.40 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -36.81 332.66 -8.28 -45.09 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.40 Total: 5.08 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -0.27 Total: -14.71 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.66 Total: -47.34 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -2.68 Total: -53.75 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 45.36 SS G_CDS: -0.59 Total: 44.77 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.81 -8.28 -45.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347841605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.618 kcal (2) G-P(sol) polarization free energy of solvation -36.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds