Wall clock time and date at job start Fri Apr 10 2020 17:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00383 * 2 1 4 4 H 1.48495 * 109.47239 * 270.00418 * 3 2 1 5 5 H 1.48504 * 109.47063 * 30.00250 * 3 2 1 6 6 H 1.48507 * 109.47280 * 149.99847 * 3 2 1 7 7 C 1.38957 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00072 * 359.97438 * 7 2 1 9 9 N 1.37105 * 119.99638 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99678 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00146 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47185 * 179.97438 * 12 10 9 14 14 S 1.65599 * 119.99773 * 165.00160 * 13 12 10 15 15 O 1.42107 * 104.27741 * 308.93231 * 14 13 12 16 16 O 1.42092 * 104.27779 * 181.07350 * 14 13 12 17 17 C 1.81404 * 104.45115 * 65.00206 * 14 13 12 18 18 C 1.52992 * 109.47352 * 180.02562 * 17 14 13 19 19 H 1.09001 * 109.48919 * 304.97157 * 18 17 14 20 20 C 1.53087 * 109.48164 * 184.94192 * 18 17 14 21 21 C 1.53186 * 109.16665 * 182.40507 * 20 18 17 22 22 C 1.53181 * 109.02951 * 56.98173 * 21 20 18 23 23 C 1.53090 * 109.16481 * 303.01710 * 22 21 20 24 24 O 1.42905 * 109.48279 * 64.99726 * 18 17 14 25 25 H 0.96999 * 119.99837 * 359.97438 * 1 2 3 26 26 H 0.96991 * 120.00021 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.46601 * 59.99950 * 12 10 9 28 28 H 1.08991 * 109.47256 * 300.00072 * 12 10 9 29 29 H 0.96992 * 119.99979 * 345.00378 * 13 12 10 30 30 H 1.09003 * 109.47028 * 59.99324 * 17 14 13 31 31 H 1.08999 * 109.46824 * 300.00222 * 17 14 13 32 32 H 1.09001 * 109.52122 * 62.50272 * 20 18 17 33 33 H 1.08996 * 109.52817 * 302.31359 * 20 18 17 34 34 H 1.08997 * 109.53990 * 297.12206 * 21 20 18 35 35 H 1.08993 * 109.61724 * 176.88942 * 21 20 18 36 36 H 1.09007 * 109.52008 * 183.11801 * 22 21 20 37 37 H 1.08997 * 109.57581 * 62.96132 * 22 21 20 38 38 H 1.08998 * 109.48371 * 297.63244 * 23 22 21 39 39 H 1.09005 * 109.49161 * 177.59641 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5607 -2.3707 0.0000 13 7 6.0489 -3.7520 0.0006 14 16 7.6310 -4.0711 -0.3704 15 8 7.8487 -3.3856 -1.5960 16 8 7.7300 -5.4865 -0.2951 17 6 8.5757 -3.2947 0.9696 18 6 10.0707 -3.5220 0.7377 19 1 10.2642 -4.5894 0.6322 20 6 10.8611 -2.9752 1.9293 21 6 12.3592 -3.1519 1.6629 22 6 12.7202 -2.4456 0.3524 23 6 11.8581 -3.0129 -0.7783 24 8 10.4768 -2.8441 -0.4530 25 1 -0.4850 0.8400 0.0004 26 1 3.8648 -0.3634 0.0004 27 1 5.9239 -1.8569 0.8900 28 1 5.9240 -1.8569 -0.8899 29 1 5.4456 -4.4796 0.2183 30 1 8.2841 -3.7360 1.9227 31 1 8.3695 -2.2245 0.9867 32 1 10.5847 -3.5213 2.8312 33 1 10.6369 -1.9166 2.0603 34 1 12.5922 -4.2136 1.5810 35 1 12.9306 -2.7152 2.4819 36 1 13.7734 -2.6131 0.1265 37 1 12.5344 -1.3761 0.4508 38 1 12.0749 -4.0737 -0.9036 39 1 12.0803 -2.4844 -1.7054 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352507044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:41 Heat of formation + Delta-G solvation = -158.699410 kcal Electronic energy + Delta-G solvation = -23434.037827 eV Core-core repulsion = 19696.814376 eV Total energy + Delta-G solvation = -3737.223451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.84775 -38.62468 -37.00438 -35.84255 -34.73093 -34.07520 -33.78256 -33.37293 -31.77861 -28.52440 -27.35735 -24.76379 -24.15240 -23.02009 -20.76166 -19.68548 -19.27675 -18.68431 -17.62970 -16.96771 -16.63960 -16.38450 -16.01814 -15.50210 -15.06686 -14.95117 -14.90933 -14.68297 -14.41847 -13.86016 -13.31824 -13.20707 -13.03115 -12.87376 -12.64796 -12.43998 -12.38882 -11.98452 -11.90210 -11.81538 -11.70017 -11.53983 -11.34897 -11.25036 -10.95865 -10.66030 -10.64942 -10.05315 -9.87238 -9.68951 -9.39414 -8.73120 -8.29286 -6.39319 -3.91901 0.24896 2.77623 2.97389 3.03472 3.11835 3.18799 3.56368 3.75254 4.03669 4.10759 4.24893 4.36012 4.40220 4.46702 4.53050 4.63597 4.66827 4.92664 5.00687 5.13143 5.16128 5.25471 5.26188 5.34170 5.41294 5.48648 5.57914 5.59245 5.66677 5.69593 5.84348 6.00884 6.74311 7.21513 7.46628 8.03197 8.47167 8.83930 9.31139 9.65996 10.73117 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.003292 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.652206 B = 8504.128478 C = 9219.879204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.580 5.580 10 C 0.444 3.556 11 O -0.570 6.570 12 C 0.100 3.900 13 N -1.102 6.102 14 S 2.620 3.380 15 O -0.939 6.939 16 O -0.960 6.960 17 C -0.633 4.633 18 C 0.100 3.900 19 H 0.073 0.927 20 C -0.142 4.142 21 C -0.126 4.126 22 C -0.158 4.158 23 C 0.058 3.942 24 O -0.373 6.373 25 H 0.275 0.725 26 H 0.373 0.627 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.427 0.573 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.244 -1.988 4.544 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.219 5.219 10 C 0.229 3.771 11 O -0.453 6.453 12 C -0.030 4.030 13 N -0.865 5.865 14 S 2.710 3.290 15 O -0.928 6.928 16 O -0.951 6.951 17 C -0.761 4.761 18 C 0.040 3.960 19 H 0.091 0.909 20 C -0.181 4.181 21 C -0.163 4.163 22 C -0.196 4.196 23 C -0.018 4.018 24 O -0.293 6.293 25 H 0.086 0.914 26 H 0.207 0.793 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.266 0.734 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 25.887 -2.785 3.641 26.290 hybrid contribution 0.472 1.460 1.011 1.838 sum 26.360 -1.324 4.652 26.800 Atomic orbital electron populations 1.69618 1.05719 1.27752 1.48377 1.25068 0.95527 0.98139 0.97258 0.86666 0.79772 0.83810 0.79141 1.19356 1.20064 1.19339 1.19453 0.78998 0.96805 1.48559 0.86093 1.42150 1.07714 1.06068 1.65930 1.19513 0.87857 0.84845 0.84897 1.90556 1.68870 1.30979 1.54920 1.20995 0.96287 0.82947 1.02807 1.55272 1.28245 1.14533 1.88487 1.04735 0.73466 0.74496 0.76269 1.93610 1.84424 1.75904 1.38911 1.93594 1.85700 1.28317 1.87461 1.30730 1.07022 1.16371 1.21957 1.21625 0.90617 0.96648 0.87088 0.90874 1.22154 0.95165 1.02936 0.97805 1.21632 0.95743 1.01072 0.97869 1.22221 1.00328 1.01425 0.95637 1.22668 0.80574 1.00560 0.98014 1.88069 1.26177 1.73478 1.41544 0.91420 0.79343 0.90251 0.88444 0.73431 0.83455 0.83880 0.90328 0.90358 0.91548 0.91053 0.90633 0.90741 0.92771 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.00 13.96 55.50 0.77 -24.23 16 2 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 3 Si 0.88 18.69 27.74 -169.99 -4.71 13.98 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.08 6.52 56.52 0.37 -4.71 16 7 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 9 N -0.58 -13.28 5.09 -10.96 -0.06 -13.33 16 10 C 0.44 9.68 7.85 -10.99 -0.09 9.59 16 11 O -0.57 -14.70 15.30 5.54 0.08 -14.62 16 12 C 0.10 1.56 6.61 -5.19 -0.03 1.53 16 13 N -1.10 -16.57 5.82 -11.65 -0.07 -16.64 16 14 S 2.62 35.67 5.32 -107.50 -0.57 35.10 16 15 O -0.94 -15.84 17.02 -59.92 -1.02 -16.86 16 16 O -0.96 -15.44 18.08 -57.54 -1.04 -16.48 16 17 C -0.63 -5.78 5.77 37.15 0.21 -5.56 16 18 C 0.10 0.93 2.64 -26.69 -0.07 0.86 16 19 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 20 C -0.14 -1.01 5.42 -26.59 -0.14 -1.15 16 21 C -0.13 -0.76 6.03 -26.54 -0.16 -0.92 16 22 C -0.16 -0.99 6.14 -26.59 -0.16 -1.16 16 23 C 0.06 0.47 6.84 37.20 0.25 0.73 16 24 O -0.37 -4.16 9.74 -36.21 -0.35 -4.51 16 25 H 0.28 7.23 8.31 -40.82 -0.34 6.90 16 26 H 0.37 7.34 5.76 -40.82 -0.24 7.11 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.39 7.69 -51.93 -0.40 0.99 16 29 H 0.43 6.90 7.66 -34.47 -0.26 6.64 16 30 H 0.15 0.95 8.14 -51.92 -0.42 0.52 16 31 H 0.14 1.10 8.14 -51.92 -0.42 0.68 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.36 8.14 -51.92 -0.42 -0.07 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -36.48 336.26 -7.86 -44.34 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -5.53 Total: 11.85 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.44 Total: -3.67 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.65 Total: -54.20 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -2.33 Total: -52.47 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.71 Total: 13.98 kcal Atomic # 16 Polarization: 35.67 SS G_CDS: -0.57 Total: 35.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.48 -7.86 -44.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352507044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.358 kcal (2) G-P(sol) polarization free energy of solvation -36.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds