Wall clock time and date at job start Fri Apr 10 2020 17:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00383 * 2 1 4 4 H 1.48495 * 109.47239 * 270.00418 * 3 2 1 5 5 H 1.48504 * 109.47063 * 30.00250 * 3 2 1 6 6 H 1.48507 * 109.47280 * 149.99847 * 3 2 1 7 7 C 1.38957 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00072 * 359.97438 * 7 2 1 9 9 N 1.37105 * 119.99638 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99678 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00146 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47185 * 179.97438 * 12 10 9 14 14 S 1.65599 * 119.99773 * 165.00160 * 13 12 10 15 15 O 1.42107 * 104.27741 * 308.93231 * 14 13 12 16 16 O 1.42092 * 104.27779 * 181.07350 * 14 13 12 17 17 C 1.81404 * 104.45115 * 65.00206 * 14 13 12 18 18 C 1.52992 * 109.47352 * 180.02562 * 17 14 13 19 19 H 1.09001 * 109.48919 * 304.97157 * 18 17 14 20 20 C 1.53087 * 109.48164 * 184.94192 * 18 17 14 21 21 C 1.53186 * 109.16665 * 182.40507 * 20 18 17 22 22 C 1.53181 * 109.02951 * 56.98173 * 21 20 18 23 23 C 1.53090 * 109.16481 * 303.01710 * 22 21 20 24 24 O 1.42905 * 109.48279 * 64.99726 * 18 17 14 25 25 H 0.96999 * 119.99837 * 359.97438 * 1 2 3 26 26 H 0.96991 * 120.00021 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.46601 * 59.99950 * 12 10 9 28 28 H 1.08991 * 109.47256 * 300.00072 * 12 10 9 29 29 H 0.96992 * 119.99979 * 345.00378 * 13 12 10 30 30 H 1.09003 * 109.47028 * 59.99324 * 17 14 13 31 31 H 1.08999 * 109.46824 * 300.00222 * 17 14 13 32 32 H 1.09001 * 109.52122 * 62.50272 * 20 18 17 33 33 H 1.08996 * 109.52817 * 302.31359 * 20 18 17 34 34 H 1.08997 * 109.53990 * 297.12206 * 21 20 18 35 35 H 1.08993 * 109.61724 * 176.88942 * 21 20 18 36 36 H 1.09007 * 109.52008 * 183.11801 * 22 21 20 37 37 H 1.08997 * 109.57581 * 62.96132 * 22 21 20 38 38 H 1.08998 * 109.48371 * 297.63244 * 23 22 21 39 39 H 1.09005 * 109.49161 * 177.59641 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5607 -2.3707 0.0000 13 7 6.0489 -3.7520 0.0006 14 16 7.6310 -4.0711 -0.3704 15 8 7.8487 -3.3856 -1.5960 16 8 7.7300 -5.4865 -0.2951 17 6 8.5757 -3.2947 0.9696 18 6 10.0707 -3.5220 0.7377 19 1 10.2642 -4.5894 0.6322 20 6 10.8611 -2.9752 1.9293 21 6 12.3592 -3.1519 1.6629 22 6 12.7202 -2.4456 0.3524 23 6 11.8581 -3.0129 -0.7783 24 8 10.4768 -2.8441 -0.4530 25 1 -0.4850 0.8400 0.0004 26 1 3.8648 -0.3634 0.0004 27 1 5.9239 -1.8569 0.8900 28 1 5.9240 -1.8569 -0.8899 29 1 5.4456 -4.4796 0.2183 30 1 8.2841 -3.7360 1.9227 31 1 8.3695 -2.2245 0.9867 32 1 10.5847 -3.5213 2.8312 33 1 10.6369 -1.9166 2.0603 34 1 12.5922 -4.2136 1.5810 35 1 12.9306 -2.7152 2.4819 36 1 13.7734 -2.6131 0.1265 37 1 12.5344 -1.3761 0.4508 38 1 12.0749 -4.0737 -0.9036 39 1 12.0803 -2.4844 -1.7054 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352507044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:40 Heat of formation + Delta-G solvation = -190.615742 kcal Electronic energy + Delta-G solvation = -23435.421823 eV Core-core repulsion = 19696.814376 eV Total energy + Delta-G solvation = -3738.607447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.45529 -40.39872 -38.16873 -37.00264 -36.34570 -35.40142 -34.61113 -34.01693 -33.79034 -29.14381 -28.90412 -25.95064 -25.31210 -23.64637 -21.48009 -21.27561 -20.55054 -20.33495 -18.86509 -17.79046 -17.59816 -17.31940 -17.28421 -16.81785 -16.59097 -16.14605 -15.85029 -15.56453 -15.43250 -14.96963 -14.45549 -14.38766 -14.23105 -13.99555 -13.80866 -13.59705 -13.46072 -13.17377 -13.12356 -12.99725 -12.94526 -12.40997 -12.36521 -12.04976 -11.96239 -11.94298 -11.60940 -11.54358 -11.27281 -10.71885 -10.52937 -10.33966 -10.27430 -8.42334 -6.04817 -0.77374 1.32586 1.38555 1.47486 1.69747 1.86317 2.24433 2.54378 2.76233 2.90425 3.13852 3.28324 3.47758 3.80525 3.86716 3.90872 3.97889 4.06310 4.16889 4.26722 4.34546 4.45097 4.48178 4.68281 4.69619 4.74384 4.86085 4.92027 5.07007 5.15447 5.19528 5.39942 5.52745 5.86706 5.99582 6.12757 6.54425 6.83167 7.33579 7.86585 8.74722 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.003292 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.652206 B = 8504.128478 C = 9219.879204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.962 3.038 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.221 1.221 7 C -0.333 4.333 8 H 0.057 0.943 9 N -0.581 5.581 10 C 0.444 3.556 11 O -0.619 6.619 12 C 0.105 3.895 13 N -1.112 6.112 14 S 2.618 3.382 15 O -0.980 6.980 16 O -0.995 6.995 17 C -0.604 4.604 18 C 0.085 3.915 19 H 0.074 0.926 20 C -0.139 4.139 21 C -0.128 4.128 22 C -0.154 4.154 23 C 0.046 3.954 24 O -0.401 6.401 25 H 0.280 0.720 26 H 0.394 0.606 27 H 0.138 0.862 28 H 0.116 0.884 29 H 0.420 0.580 30 H 0.183 0.817 31 H 0.169 0.831 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.986 0.372 6.268 30.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.212 4.212 3 Si 0.782 3.218 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.144 1.144 7 C -0.462 4.462 8 H 0.075 0.925 9 N -0.222 5.222 10 C 0.231 3.769 11 O -0.504 6.504 12 C -0.024 4.024 13 N -0.873 5.873 14 S 2.715 3.285 15 O -0.970 6.970 16 O -0.986 6.986 17 C -0.736 4.736 18 C 0.025 3.975 19 H 0.092 0.908 20 C -0.178 4.178 21 C -0.165 4.165 22 C -0.192 4.192 23 C -0.030 4.030 24 O -0.321 6.321 25 H 0.090 0.910 26 H 0.231 0.769 27 H 0.155 0.845 28 H 0.134 0.866 29 H 0.257 0.743 30 H 0.201 0.799 31 H 0.187 0.813 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 29.632 -0.453 5.323 30.109 hybrid contribution -0.660 0.582 0.474 0.999 sum 28.972 0.129 5.797 29.547 Atomic orbital electron populations 1.69800 1.08280 1.29445 1.49596 1.26161 0.96469 1.02887 0.95691 0.85404 0.79914 0.76482 0.80022 1.18408 1.20009 1.14411 1.19023 0.81331 0.95089 1.50784 0.92489 1.41942 1.05951 1.07543 1.66719 1.20744 0.90672 0.83634 0.81889 1.90541 1.70921 1.32839 1.56108 1.21171 0.90769 0.84011 1.06487 1.55319 1.28889 1.14136 1.88939 1.04608 0.73139 0.73824 0.76957 1.93554 1.84732 1.76154 1.42549 1.93545 1.85968 1.30781 1.88274 1.30526 1.05672 1.17364 1.20077 1.21903 0.90750 0.96982 0.87835 0.90843 1.22167 0.95284 1.03213 0.97101 1.21683 0.95383 1.01421 0.98060 1.22193 1.00768 1.01095 0.95131 1.22887 0.79880 1.01123 0.99088 1.88029 1.27715 1.73892 1.42486 0.91017 0.76940 0.84454 0.86602 0.74342 0.79934 0.81295 0.88600 0.90000 0.91223 0.89661 0.89127 0.91014 0.92416 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.96 21.66 0.30 -54.82 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 3 Si 0.96 37.05 27.74 68.60 1.90 38.95 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 5 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.22 -6.81 6.52 99.48 0.65 -6.16 16 7 C -0.33 -18.98 10.16 84.04 0.85 -18.13 16 8 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 9 N -0.58 -26.07 5.09 -306.98 -1.56 -27.63 16 10 C 0.44 19.10 7.85 87.66 0.69 19.79 16 11 O -0.62 -33.04 15.30 -3.08 -0.05 -33.09 16 12 C 0.11 2.96 6.61 85.63 0.57 3.52 16 13 N -1.11 -31.83 5.82 -190.79 -1.11 -32.94 16 14 S 2.62 67.46 5.32 -56.49 -0.30 67.16 16 15 O -0.98 -32.30 17.02 -125.38 -2.13 -34.44 16 16 O -1.00 -31.85 18.08 -127.65 -2.31 -34.16 16 17 C -0.60 -8.53 5.77 71.98 0.42 -8.11 16 18 C 0.08 1.32 2.64 30.62 0.08 1.40 16 19 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 20 C -0.14 -1.39 5.42 30.69 0.17 -1.23 16 21 C -0.13 -1.11 6.03 30.72 0.19 -0.92 16 22 C -0.15 -1.51 6.14 30.68 0.19 -1.33 16 23 C 0.05 0.67 6.84 72.01 0.49 1.16 16 24 O -0.40 -8.07 9.74 -148.04 -1.44 -9.51 16 25 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.39 14.16 5.76 -92.72 -0.53 13.63 16 27 H 0.14 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.12 2.90 7.69 -2.39 -0.02 2.88 16 29 H 0.42 13.60 7.66 -96.75 -0.74 12.86 16 30 H 0.18 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.17 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -86.88 336.26 -2.85 -89.73 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: -0.26 Total: 34.83 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 4.10 Total: -4.07 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -2.37 Total: -115.40 kcal Atomic # 8 Polarization: -105.27 SS G_CDS: -5.93 Total: -111.20 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 1.90 Total: 38.95 kcal Atomic # 16 Polarization: 67.46 SS G_CDS: -0.30 Total: 67.16 kcal Total: -86.88 -2.85 -89.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352507044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.889 kcal (2) G-P(sol) polarization free energy of solvation -86.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds