Wall clock time and date at job start Fri Apr 10 2020 17:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37093 * 120.00221 * 2 1 4 4 H 1.08006 * 119.99937 * 204.39501 * 3 2 1 5 5 C 1.38951 * 120.00069 * 24.38668 * 3 2 1 6 6 N 1.31407 * 119.99645 * 12.65339 * 5 3 2 7 7 Si 1.86803 * 120.00030 * 192.64740 * 5 3 2 8 8 H 1.48503 * 109.46904 * 60.00396 * 7 5 3 9 9 H 1.48502 * 109.46765 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47137 * 300.00501 * 7 5 3 11 11 C 1.34776 * 119.99792 * 179.97438 * 2 1 3 12 12 O 1.21297 * 120.00172 * 179.97438 * 11 2 1 13 13 C 1.50703 * 120.00357 * 359.97438 * 11 2 1 14 14 N 1.46500 * 109.47506 * 180.02562 * 13 11 2 15 15 C 1.34771 * 120.00063 * 179.97438 * 14 13 11 16 16 O 1.21583 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.47613 * 119.99824 * 179.97438 * 15 14 13 18 18 C 1.39700 * 120.08435 * 0.02562 * 17 15 14 19 19 C 1.37767 * 120.00477 * 179.73027 * 18 17 15 20 20 C 1.38857 * 120.21741 * 0.49266 * 19 18 17 21 21 C 1.39543 * 120.05511 * 359.51197 * 20 19 18 22 22 C 1.38124 * 119.98146 * 0.24162 * 21 20 19 23 23 O 1.36535 * 108.59498 * 180.24340 * 21 20 19 24 24 C 1.43979 * 105.45221 * 342.69040 * 23 21 20 25 25 O 1.36358 * 131.35566 * 179.82835 * 20 19 18 26 26 H 1.09000 * 109.47125 * 265.87148 * 1 2 3 27 27 H 1.09004 * 109.46964 * 25.87017 * 1 2 3 28 28 H 1.08997 * 109.47328 * 145.86861 * 1 2 3 29 29 H 0.97002 * 119.99457 * 179.97438 * 6 5 3 30 30 H 1.08995 * 109.46878 * 59.99831 * 13 11 2 31 31 H 1.09005 * 109.46953 * 300.00272 * 13 11 2 32 32 H 0.97005 * 119.99481 * 359.97438 * 14 13 11 33 33 H 1.08001 * 119.99397 * 359.97438 * 18 17 15 34 34 H 1.07995 * 119.88782 * 180.30869 * 19 18 17 35 35 H 1.07999 * 120.04924 * 180.02562 * 22 21 20 36 36 H 1.09001 * 110.56590 * 268.61783 * 24 23 21 37 37 H 1.08996 * 110.56764 * 145.75886 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1582 1.2289 -0.3863 5 6 1.5488 2.3369 0.4969 6 7 0.4346 2.2491 1.1881 7 14 2.3237 4.0073 0.1823 8 1 2.4040 4.2481 -1.2808 9 1 1.4939 5.0647 0.8137 10 1 3.6895 4.0368 0.7645 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4724 0.0017 14 7 2.3373 -3.5859 0.0027 15 6 1.8880 -4.8565 0.0043 16 8 0.6926 -5.0787 0.0045 17 6 2.8472 -5.9785 0.0048 18 6 4.2211 -5.7253 0.0040 19 6 5.1149 -6.7736 0.0100 20 6 4.6552 -8.0839 0.0066 21 6 3.2842 -8.3435 0.0072 22 6 2.3834 -7.2965 0.0063 23 8 3.0972 -9.6960 0.0088 24 6 4.3569 -10.2579 -0.4038 25 8 5.3228 -9.2729 0.0079 26 1 -0.3633 -0.0740 1.0250 27 1 -0.3633 0.9247 -0.4484 28 1 -0.3634 -0.8506 -0.5766 29 1 0.0148 3.0517 1.5352 30 1 0.7583 -2.5307 -0.8880 31 1 0.7590 -2.5295 0.8920 32 1 3.2910 -3.4086 0.0022 33 1 4.5825 -4.7075 0.0027 34 1 6.1765 -6.5757 0.0145 35 1 1.3220 -7.4962 0.0072 36 1 4.3815 -10.3896 -1.4855 37 1 4.5375 -11.2061 0.1025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354155276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:45 Heat of formation + Delta-G solvation = -87.170672 kcal Electronic energy + Delta-G solvation = -23953.742362 eV Core-core repulsion = 20084.176678 eV Total energy + Delta-G solvation = -3869.565684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.48164 -39.94680 -38.50945 -37.35929 -36.62552 -35.04408 -33.99316 -31.78527 -31.00939 -30.59557 -27.85369 -26.34439 -25.95151 -24.42058 -23.59325 -23.06268 -20.75522 -19.48266 -18.48707 -18.22748 -17.66977 -17.02385 -16.91728 -16.16778 -15.77003 -15.43176 -15.27468 -14.76522 -14.52168 -14.33548 -14.15741 -14.14932 -13.89202 -13.36013 -13.32052 -13.12332 -13.07011 -12.47294 -12.15368 -11.61770 -11.45379 -11.40167 -11.34313 -11.15684 -10.90728 -10.46925 -10.37741 -9.95461 -9.20998 -9.09903 -8.88895 -8.63644 -8.39389 -7.79482 -6.42037 -3.99576 0.47559 0.93519 2.32824 2.75119 2.99040 3.12960 3.20198 3.22812 3.37947 3.59939 3.72550 4.07400 4.12801 4.30948 4.52575 4.65891 4.75704 4.79357 4.82029 4.95646 5.03066 5.21303 5.60105 5.67404 5.76691 5.81160 5.88675 5.94776 5.97089 6.04424 6.28373 6.55792 6.76579 6.77552 7.12995 7.47566 7.70563 7.99605 8.31230 8.36186 9.04356 9.28289 9.79934 10.62400 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.039095 B = 0.002535 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.033785 B =11042.045432 C =11669.277647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.434 5.434 3 C -0.311 4.311 4 H 0.100 0.900 5 C 0.033 3.967 6 N -0.877 5.877 7 Si 0.930 3.070 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.434 3.566 12 O -0.592 6.592 13 C 0.109 3.891 14 N -0.700 5.700 15 C 0.560 3.440 16 O -0.542 6.542 17 C -0.119 4.119 18 C -0.070 4.070 19 C -0.106 4.106 20 C 0.054 3.946 21 C 0.019 3.981 22 C -0.041 4.041 23 O -0.306 6.306 24 C 0.212 3.788 25 O -0.307 6.307 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.030 0.970 29 H 0.270 0.730 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.410 0.590 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.086 0.914 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.979 -19.024 -3.296 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.152 5.152 3 C -0.439 4.439 4 H 0.117 0.883 5 C -0.171 4.171 6 N -0.516 5.516 7 Si 0.756 3.244 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.197 1.197 11 C 0.222 3.778 12 O -0.478 6.478 13 C -0.018 4.018 14 N -0.354 5.354 15 C 0.346 3.654 16 O -0.421 6.421 17 C -0.122 4.122 18 C -0.088 4.088 19 C -0.125 4.125 20 C 0.009 3.991 21 C -0.025 4.025 22 C -0.061 4.061 23 O -0.223 6.223 24 C 0.101 3.899 25 O -0.223 6.223 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.250 0.750 33 H 0.166 0.834 34 H 0.162 0.838 35 H 0.168 0.832 36 H 0.103 0.897 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.591 -19.166 -3.094 19.950 hybrid contribution 0.616 0.707 -0.056 0.940 sum 5.208 -18.459 -3.150 19.436 Atomic orbital electron populations 1.21593 0.80810 1.00398 1.01088 1.43507 1.05714 1.04553 1.61387 1.19611 1.00764 0.83888 1.39597 0.88262 1.25394 0.96547 1.00313 0.94884 1.69984 1.18992 1.30037 1.32550 0.85949 0.79063 0.80629 0.78772 1.19804 1.20876 1.19699 1.19887 0.88101 0.84861 0.84977 1.90486 1.13702 1.86635 1.57019 1.21100 0.91749 0.85530 1.03426 1.45645 1.11830 1.04500 1.73467 1.17875 0.87857 0.82518 0.77135 1.90779 1.15951 1.84839 1.50554 1.19629 0.93542 0.92833 1.06241 1.21252 0.91458 0.99610 0.96525 1.20008 1.01337 0.87173 1.03975 1.20088 0.89362 0.88133 1.01521 1.19566 0.93098 0.84076 1.05744 1.20033 1.00147 0.88025 0.97865 1.87400 1.34463 1.15359 1.85036 1.25666 0.71567 0.92395 1.00297 1.87338 1.35740 1.14742 1.84454 0.92529 0.90371 0.95129 0.91958 0.89674 0.89378 0.75039 0.83359 0.83848 0.83241 0.89678 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.26 8.44 59.84 0.51 2.76 16 2 N -0.43 -10.70 3.01 -122.19 -0.37 -11.07 16 3 C -0.31 -8.34 9.24 -14.93 -0.14 -8.48 16 4 H 0.10 2.76 7.45 -52.48 -0.39 2.37 16 5 C 0.03 0.84 5.04 -17.47 -0.09 0.75 16 6 N -0.88 -22.74 10.83 55.50 0.60 -22.14 16 7 Si 0.93 20.08 29.57 -169.99 -5.03 15.06 16 8 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 11 C 0.43 10.00 7.70 -10.98 -0.08 9.91 16 12 O -0.59 -15.00 15.38 5.54 0.09 -14.92 16 13 C 0.11 2.02 4.76 -5.19 -0.02 2.00 16 14 N -0.70 -11.61 5.48 -62.50 -0.34 -11.95 16 15 C 0.56 8.96 7.76 -12.44 -0.10 8.86 16 16 O -0.54 -10.12 16.34 5.29 0.09 -10.04 16 17 C -0.12 -1.57 5.87 -104.97 -0.62 -2.18 16 18 C -0.07 -0.77 9.53 -39.21 -0.37 -1.14 16 19 C -0.11 -1.07 10.04 -39.52 -0.40 -1.47 16 20 C 0.05 0.60 7.16 -38.87 -0.28 0.33 16 21 C 0.02 0.23 7.14 -39.14 -0.28 -0.05 16 22 C -0.04 -0.52 9.60 -39.07 -0.38 -0.90 16 23 O -0.31 -3.33 11.41 -45.80 -0.52 -3.85 16 24 C 0.21 1.56 8.88 101.05 0.90 2.45 16 25 O -0.31 -3.12 11.39 -45.22 -0.52 -3.63 16 26 H 0.06 1.25 7.83 -51.93 -0.41 0.84 16 27 H 0.08 1.77 6.80 -51.93 -0.35 1.42 16 28 H 0.03 0.55 6.61 -51.93 -0.34 0.20 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.09 1.49 7.41 -51.93 -0.38 1.10 16 31 H 0.09 1.61 8.11 -51.93 -0.42 1.19 16 32 H 0.41 6.48 5.46 -40.82 -0.22 6.26 16 33 H 0.15 1.46 6.39 -52.49 -0.34 1.12 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.15 1.89 7.64 -52.49 -0.40 1.49 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -32.05 322.24 -6.16 -38.21 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -3.66 Total: 6.63 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -1.35 Total: 12.85 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.11 Total: -45.16 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.87 Total: -32.44 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.05 -6.16 -38.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354155276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.962 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds