Wall clock time and date at job start Fri Apr 10 2020 17:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37093 * 120.00221 * 2 1 4 4 H 1.08006 * 119.99937 * 204.39501 * 3 2 1 5 5 C 1.38951 * 120.00069 * 24.38668 * 3 2 1 6 6 N 1.31407 * 119.99645 * 12.65339 * 5 3 2 7 7 Si 1.86803 * 120.00030 * 192.64740 * 5 3 2 8 8 H 1.48503 * 109.46904 * 60.00396 * 7 5 3 9 9 H 1.48502 * 109.46765 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47137 * 300.00501 * 7 5 3 11 11 C 1.34776 * 119.99792 * 179.97438 * 2 1 3 12 12 O 1.21297 * 120.00172 * 179.97438 * 11 2 1 13 13 C 1.50703 * 120.00357 * 359.97438 * 11 2 1 14 14 N 1.46500 * 109.47506 * 180.02562 * 13 11 2 15 15 C 1.34771 * 120.00063 * 179.97438 * 14 13 11 16 16 O 1.21583 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.47613 * 119.99824 * 179.97438 * 15 14 13 18 18 C 1.39700 * 120.08435 * 0.02562 * 17 15 14 19 19 C 1.37767 * 120.00477 * 179.73027 * 18 17 15 20 20 C 1.38857 * 120.21741 * 0.49266 * 19 18 17 21 21 C 1.39543 * 120.05511 * 359.51197 * 20 19 18 22 22 C 1.38124 * 119.98146 * 0.24162 * 21 20 19 23 23 O 1.36535 * 108.59498 * 180.24340 * 21 20 19 24 24 C 1.43979 * 105.45221 * 342.69040 * 23 21 20 25 25 O 1.36358 * 131.35566 * 179.82835 * 20 19 18 26 26 H 1.09000 * 109.47125 * 265.87148 * 1 2 3 27 27 H 1.09004 * 109.46964 * 25.87017 * 1 2 3 28 28 H 1.08997 * 109.47328 * 145.86861 * 1 2 3 29 29 H 0.97002 * 119.99457 * 179.97438 * 6 5 3 30 30 H 1.08995 * 109.46878 * 59.99831 * 13 11 2 31 31 H 1.09005 * 109.46953 * 300.00272 * 13 11 2 32 32 H 0.97005 * 119.99481 * 359.97438 * 14 13 11 33 33 H 1.08001 * 119.99397 * 359.97438 * 18 17 15 34 34 H 1.07995 * 119.88782 * 180.30869 * 19 18 17 35 35 H 1.07999 * 120.04924 * 180.02562 * 22 21 20 36 36 H 1.09001 * 110.56590 * 268.61783 * 24 23 21 37 37 H 1.08996 * 110.56764 * 145.75886 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1582 1.2289 -0.3863 5 6 1.5488 2.3369 0.4969 6 7 0.4346 2.2491 1.1881 7 14 2.3237 4.0073 0.1823 8 1 2.4040 4.2481 -1.2808 9 1 1.4939 5.0647 0.8137 10 1 3.6895 4.0368 0.7645 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4724 0.0017 14 7 2.3373 -3.5859 0.0027 15 6 1.8880 -4.8565 0.0043 16 8 0.6926 -5.0787 0.0045 17 6 2.8472 -5.9785 0.0048 18 6 4.2211 -5.7253 0.0040 19 6 5.1149 -6.7736 0.0100 20 6 4.6552 -8.0839 0.0066 21 6 3.2842 -8.3435 0.0072 22 6 2.3834 -7.2965 0.0063 23 8 3.0972 -9.6960 0.0088 24 6 4.3569 -10.2579 -0.4038 25 8 5.3228 -9.2729 0.0079 26 1 -0.3633 -0.0740 1.0250 27 1 -0.3633 0.9247 -0.4484 28 1 -0.3634 -0.8506 -0.5766 29 1 0.0148 3.0517 1.5352 30 1 0.7583 -2.5307 -0.8880 31 1 0.7590 -2.5295 0.8920 32 1 3.2910 -3.4086 0.0022 33 1 4.5825 -4.7075 0.0027 34 1 6.1765 -6.5757 0.0145 35 1 1.3220 -7.4962 0.0072 36 1 4.3815 -10.3896 -1.4855 37 1 4.5375 -11.2061 0.1025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354155276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:43 Heat of formation + Delta-G solvation = -109.738492 kcal Electronic energy + Delta-G solvation = -23954.720976 eV Core-core repulsion = 20084.176678 eV Total energy + Delta-G solvation = -3870.544298 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.26240 -41.26829 -40.19078 -38.38447 -37.40403 -36.85661 -35.49919 -33.71263 -31.94033 -31.55780 -29.34563 -27.93292 -26.87546 -26.05641 -24.72162 -23.96282 -21.91998 -21.13554 -19.71366 -19.02983 -18.89083 -18.44304 -17.92309 -17.68878 -17.01861 -16.77544 -16.74019 -16.21807 -15.80970 -15.73241 -15.56329 -15.03661 -14.97479 -14.72222 -14.23180 -14.13335 -14.01011 -13.90804 -13.71264 -13.37813 -13.20473 -13.13477 -12.63425 -12.35858 -12.31410 -12.13616 -11.94324 -11.26878 -11.00860 -10.51762 -10.30019 -10.05732 -9.72211 -9.25064 -8.35958 -6.01989 -0.47548 0.06558 1.39867 1.43733 1.47608 1.54133 1.70577 1.90120 1.97048 2.29557 2.47847 2.58302 3.02726 3.07455 3.27979 3.57266 3.76393 3.85769 3.93699 3.95722 4.04508 4.22212 4.33384 4.41942 4.43906 4.65503 4.83251 4.87383 5.00432 5.03150 5.07809 5.11868 5.23071 5.35541 5.44522 5.96110 6.06067 6.38603 6.44744 7.03290 7.10273 7.39494 7.90604 8.66914 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.039095 B = 0.002535 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.033785 B =11042.045432 C =11669.277647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.452 5.452 3 C -0.345 4.345 4 H 0.079 0.921 5 C -0.002 4.002 6 N -0.894 5.894 7 Si 0.992 3.008 8 H -0.266 1.266 9 H -0.273 1.273 10 H -0.275 1.275 11 C 0.432 3.568 12 O -0.620 6.620 13 C 0.122 3.878 14 N -0.700 5.700 15 C 0.564 3.436 16 O -0.573 6.573 17 C -0.135 4.135 18 C -0.061 4.061 19 C -0.101 4.101 20 C 0.057 3.943 21 C 0.011 3.989 22 C -0.050 4.050 23 O -0.322 6.322 24 C 0.203 3.797 25 O -0.314 6.314 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.275 0.725 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.415 0.585 33 H 0.160 0.840 34 H 0.171 0.829 35 H 0.142 0.858 36 H 0.109 0.891 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.938 -19.969 -3.648 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.170 5.170 3 C -0.473 4.473 4 H 0.097 0.903 5 C -0.204 4.204 6 N -0.532 5.532 7 Si 0.815 3.185 8 H -0.191 1.191 9 H -0.198 1.198 10 H -0.200 1.200 11 C 0.221 3.779 12 O -0.508 6.508 13 C -0.005 4.005 14 N -0.354 5.354 15 C 0.353 3.647 16 O -0.454 6.454 17 C -0.138 4.138 18 C -0.080 4.080 19 C -0.120 4.120 20 C 0.011 3.989 21 C -0.033 4.033 22 C -0.069 4.069 23 O -0.238 6.238 24 C 0.093 3.907 25 O -0.230 6.230 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.255 0.745 33 H 0.178 0.822 34 H 0.189 0.811 35 H 0.160 0.840 36 H 0.126 0.874 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.544 -20.138 -3.449 21.170 hybrid contribution 0.373 0.844 0.057 0.925 sum 5.918 -19.294 -3.392 20.464 Atomic orbital electron populations 1.21542 0.79254 1.01197 1.00969 1.43743 1.06836 1.04561 1.61845 1.19621 1.00694 0.85628 1.41334 0.90333 1.26147 0.96959 1.03147 0.94158 1.70059 1.19614 1.31060 1.32480 0.85015 0.78009 0.76545 0.78903 1.19075 1.19776 1.20009 1.20552 0.88026 0.85897 0.83414 1.90454 1.15124 1.87376 1.57801 1.20904 0.91593 0.83727 1.04322 1.45606 1.11709 1.04305 1.73810 1.18219 0.87917 0.82661 0.75916 1.90757 1.17394 1.85200 1.52030 1.19382 0.93842 0.91869 1.08694 1.21369 0.90566 1.00560 0.95522 1.20276 1.02518 0.86444 1.02719 1.20295 0.89133 0.88912 1.00524 1.19593 0.93384 0.84498 1.05821 1.19969 1.00078 0.88332 0.98543 1.87380 1.36385 1.14797 1.85274 1.26240 0.69651 0.92558 1.02279 1.87329 1.36496 1.14683 1.84445 0.93484 0.91894 0.91454 0.91555 0.88192 0.88885 0.74541 0.82246 0.81110 0.84018 0.87378 0.81646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.87 8.44 127.77 1.08 5.95 16 2 N -0.45 -22.47 3.01 -658.89 -1.98 -24.45 16 3 C -0.34 -18.82 9.24 84.04 0.78 -18.04 16 4 H 0.08 4.51 7.45 -2.91 -0.02 4.49 16 5 C 0.00 -0.09 5.04 84.93 0.43 0.34 16 6 N -0.89 -46.32 10.83 21.66 0.23 -46.09 16 7 Si 0.99 41.01 29.57 68.60 2.03 43.04 16 8 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 9 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 11 C 0.43 19.97 7.70 87.66 0.67 20.64 16 12 O -0.62 -31.71 15.38 -3.08 -0.05 -31.76 16 13 C 0.12 4.44 4.76 85.63 0.41 4.85 16 14 N -0.70 -22.82 5.48 -469.93 -2.57 -25.40 16 15 C 0.56 17.90 7.76 86.72 0.67 18.57 16 16 O -0.57 -21.40 16.34 -3.98 -0.06 -21.46 16 17 C -0.13 -3.47 5.87 -20.09 -0.12 -3.59 16 18 C -0.06 -1.26 9.53 22.51 0.21 -1.05 16 19 C -0.10 -1.81 10.04 22.31 0.22 -1.59 16 20 C 0.06 1.16 7.16 22.73 0.16 1.32 16 21 C 0.01 0.26 7.14 22.56 0.16 0.42 16 22 C -0.05 -1.25 9.60 22.60 0.22 -1.03 16 23 O -0.32 -6.52 11.41 -76.47 -0.87 -7.40 16 24 C 0.20 2.44 8.88 113.37 1.01 3.45 16 25 O -0.31 -5.58 11.39 -74.39 -0.85 -6.43 16 26 H 0.05 2.08 7.83 -2.39 -0.02 2.06 16 27 H 0.06 2.86 6.80 -2.38 -0.02 2.84 16 28 H 0.07 2.34 6.61 -2.39 -0.02 2.32 16 29 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 30 H 0.10 3.37 7.41 -2.39 -0.02 3.35 16 31 H 0.09 3.33 8.11 -2.38 -0.02 3.31 16 32 H 0.41 12.87 5.46 -92.70 -0.51 12.36 16 33 H 0.16 2.88 6.39 -2.91 -0.02 2.86 16 34 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.14 3.69 7.64 -2.91 -0.02 3.66 16 36 H 0.11 0.81 8.14 -2.39 -0.02 0.80 16 37 H 0.17 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -69.29 322.24 2.41 -66.87 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.63 Total: 22.83 kcal Atomic # 6 Polarization: 24.33 SS G_CDS: 5.91 Total: 30.24 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -4.32 Total: -95.94 kcal Atomic # 8 Polarization: -65.21 SS G_CDS: -1.83 Total: -67.05 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -69.29 2.41 -66.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354155276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.864 kcal (2) G-P(sol) polarization free energy of solvation -69.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds