Wall clock time and date at job start Fri Apr 10 2020 17:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50703 * 109.47225 * 275.27579 * 3 2 1 5 5 H 1.07996 * 120.00066 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99842 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99597 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00371 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47175 * 89.99893 * 8 6 4 10 10 H 1.48496 * 109.47237 * 209.99970 * 8 6 4 11 11 H 1.48502 * 109.46952 * 330.00114 * 8 6 4 12 12 S 1.65608 * 119.99916 * 180.27320 * 2 1 3 13 13 O 1.42100 * 106.40059 * 23.26834 * 12 2 1 14 14 O 1.42096 * 106.40050 * 156.18867 * 12 2 1 15 15 N 1.65599 * 107.21718 * 269.72928 * 12 2 1 16 16 C 1.46501 * 120.00418 * 64.99891 * 15 12 2 17 17 H 1.09001 * 109.46745 * 24.99749 * 16 15 12 18 18 C 1.50699 * 109.47055 * 265.00031 * 16 15 12 19 19 O 1.20831 * 120.00009 * 359.97438 * 18 16 15 20 20 O 1.34229 * 120.00110 * 179.97438 * 18 16 15 21 21 C 1.52996 * 109.47178 * 144.99978 * 16 15 12 22 22 C 1.53783 * 113.61583 * 277.49649 * 21 16 15 23 23 C 1.53777 * 87.08351 * 220.02165 * 22 21 16 24 24 C 1.53783 * 87.08189 * 25.43163 * 23 22 21 25 25 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 26 26 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 27 27 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 28 28 H 1.09005 * 109.47101 * 35.27701 * 3 2 1 29 29 H 1.09001 * 109.47746 * 155.26944 * 3 2 1 30 30 H 0.97008 * 119.99656 * 179.97438 * 7 6 4 31 31 H 0.97001 * 119.99869 * 244.99685 * 15 12 2 32 32 H 0.96696 * 117.00043 * 180.02562 * 20 18 16 33 33 H 1.09000 * 112.85377 * 48.80456 * 21 16 15 34 34 H 1.09004 * 113.61261 * 334.57203 * 22 21 16 35 35 H 1.08996 * 113.61278 * 105.46493 * 22 21 16 36 36 H 1.08997 * 113.61535 * 270.88805 * 23 22 21 37 37 H 1.08996 * 113.68981 * 139.98859 * 23 22 21 38 38 H 1.08993 * 113.61722 * 220.02007 * 24 23 22 39 39 H 1.09007 * 113.61316 * 89.11432 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3356 1.7690 -1.4148 5 1 1.9196 1.1988 -2.2322 6 6 2.9929 2.9548 -1.6656 7 7 3.1139 3.3911 -2.9003 8 14 3.7118 3.9414 -0.2517 9 1 5.1100 3.5063 -0.0049 10 1 3.6965 5.3854 -0.5976 11 1 2.9003 3.7168 0.9716 12 16 2.2930 -1.4342 -0.0068 13 8 1.4090 -2.4052 -0.5500 14 8 3.5736 -1.1555 -0.5559 15 7 2.5445 -1.8625 1.5729 16 6 1.4046 -2.1837 2.4353 17 1 0.5686 -2.5202 1.8221 18 6 0.9981 -0.9558 3.2086 19 8 1.5992 0.0811 3.0555 20 8 -0.0318 -1.0140 4.0676 21 6 1.8003 -3.2934 3.4114 22 6 1.7028 -4.7058 2.8109 23 6 1.1355 -5.1579 4.1668 24 6 0.6679 -3.7066 4.3663 25 1 -0.3634 -0.0049 1.0276 26 1 -0.3634 0.8924 -0.5096 27 1 -0.3634 -0.8874 -0.5181 28 1 1.6526 2.0028 0.5935 29 1 3.1875 1.1166 0.4299 30 1 3.5760 4.2256 -3.0767 31 1 3.4467 -1.9007 1.9273 32 1 -0.2555 -0.2008 4.5404 33 1 2.7464 -3.0963 3.9155 34 1 0.9887 -4.7833 1.9910 35 1 2.6708 -5.1470 2.5734 36 1 1.9001 -5.4718 4.8773 37 1 0.3169 -5.8727 4.0826 38 1 0.8003 -3.3412 5.3846 39 1 -0.3292 -3.5109 3.9717 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548563672.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:34 Heat of formation + Delta-G solvation = -168.693926 kcal Electronic energy + Delta-G solvation = -25005.522851 eV Core-core repulsion = 21267.866005 eV Total energy + Delta-G solvation = -3737.656846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.54759 -39.53575 -38.38800 -37.36626 -37.12449 -36.95449 -35.64530 -34.53468 -30.32240 -29.63189 -26.86132 -26.42757 -25.10953 -23.86070 -22.40114 -21.04618 -20.03819 -19.20281 -19.08055 -18.67666 -18.33578 -17.99046 -17.37313 -16.83361 -16.62963 -16.14972 -15.83175 -15.35594 -15.03842 -14.68949 -14.52555 -14.31060 -14.09733 -13.50691 -13.47735 -13.28043 -13.20586 -13.19110 -13.04656 -12.93828 -12.77200 -12.43947 -12.42156 -12.33172 -12.07553 -11.86450 -11.73193 -11.68215 -11.29146 -11.11857 -10.80835 -10.62710 -9.81236 -8.31877 -6.36840 -0.47497 1.21275 1.33578 1.36450 1.46459 1.70063 2.21697 2.32451 2.49400 3.01743 3.29339 3.48845 3.66825 3.73148 3.94416 3.98424 4.08040 4.19738 4.40522 4.52984 4.58135 4.67375 4.84867 4.88217 4.98483 4.99800 5.00642 5.20413 5.24020 5.30181 5.35473 5.45826 5.63452 5.64995 5.68472 5.92252 6.27830 6.65661 7.04811 7.26191 8.85455 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.022597 B = 0.005109 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.818459 B = 5479.554510 C = 6008.043646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.993 5.993 3 C 0.250 3.750 4 C -0.543 4.543 5 H 0.033 0.967 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.940 3.060 9 H -0.269 1.269 10 H -0.274 1.274 11 H -0.240 1.240 12 S 2.794 3.206 13 O -0.997 6.997 14 O -1.004 7.004 15 N -1.095 6.095 16 C 0.167 3.833 17 H 0.133 0.867 18 C 0.460 3.540 19 O -0.525 6.525 20 O -0.498 6.498 21 C -0.114 4.114 22 C -0.140 4.140 23 C -0.135 4.135 24 C -0.117 4.117 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.026 0.974 30 H 0.268 0.732 31 H 0.428 0.572 32 H 0.425 0.575 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.463 -15.204 21.210 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.834 5.834 3 C 0.125 3.875 4 C -0.583 4.583 5 H 0.051 0.949 6 C -0.186 4.186 7 N -0.585 5.585 8 Si 0.763 3.237 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.164 1.164 12 S 2.802 3.198 13 O -0.980 6.980 14 O -0.988 6.988 15 N -0.856 5.856 16 C 0.057 3.943 17 H 0.150 0.850 18 C 0.300 3.700 19 O -0.414 6.414 20 O -0.311 6.311 21 C -0.134 4.134 22 C -0.178 4.178 23 C -0.173 4.173 24 C -0.155 4.155 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.264 0.736 32 H 0.287 0.713 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.067 -15.606 20.008 26.340 hybrid contribution 0.742 1.718 0.392 1.912 sum -6.325 -13.887 20.400 25.476 Atomic orbital electron populations 1.21569 0.78145 1.04166 1.01750 1.57203 1.15579 1.21552 1.89092 1.18983 0.91427 0.82219 0.94882 1.21735 1.36333 1.06839 0.93366 0.94876 1.25833 0.95768 0.98521 0.98509 1.70057 1.44135 1.22823 1.21476 0.85829 0.79790 0.77965 0.80154 1.19435 1.19926 1.16354 1.01432 0.72363 0.72491 0.73521 1.93526 1.67279 1.59844 1.77331 1.93593 1.42967 1.85260 1.76993 1.55785 1.15178 1.84508 1.30165 1.20664 0.90070 0.90652 0.92923 0.84955 1.24174 0.77493 0.90392 0.77938 1.90818 1.53817 1.33034 1.63693 1.84495 1.47782 1.45547 1.53269 1.22962 1.01967 0.92084 0.96359 1.23050 1.02377 0.94047 0.98287 1.22811 1.01295 0.96760 0.96416 1.22909 0.97743 0.95644 0.99248 0.91818 0.90994 0.90109 0.93839 0.95598 0.92257 0.73569 0.71324 0.87182 0.89837 0.90856 0.89244 0.90272 0.90188 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.98 10.68 127.77 1.36 4.35 16 2 N -0.99 -41.15 3.18 -543.25 -1.73 -42.87 16 3 C 0.25 12.33 4.14 85.64 0.35 12.68 16 4 C -0.54 -32.72 9.94 25.60 0.25 -32.47 16 5 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 6 C 0.01 0.72 5.47 84.66 0.46 1.18 16 7 N -0.94 -60.89 13.96 21.45 0.30 -60.59 16 8 Si 0.94 45.20 27.47 68.60 1.88 47.08 16 9 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 12 S 2.79 108.43 6.08 -56.49 -0.34 108.09 16 13 O -1.00 -38.95 16.07 -128.00 -2.06 -41.00 16 14 O -1.00 -48.73 17.11 -128.00 -2.19 -50.92 16 15 N -1.10 -29.68 5.02 -172.53 -0.87 -30.54 16 16 C 0.17 3.47 2.68 44.24 0.12 3.59 16 17 H 0.13 2.62 7.30 -2.39 -0.02 2.60 16 18 C 0.46 9.93 6.97 71.24 0.50 10.43 16 19 O -0.53 -15.72 17.14 21.95 0.38 -15.35 16 20 O -0.50 -6.68 11.57 -51.41 -0.59 -7.28 16 21 C -0.11 -1.66 3.36 -10.27 -0.03 -1.70 16 22 C -0.14 -1.97 7.63 31.12 0.24 -1.73 16 23 C -0.14 -1.36 8.08 31.12 0.25 -1.11 16 24 C -0.12 -1.28 6.08 31.12 0.19 -1.09 16 25 H 0.06 1.69 7.43 -2.39 -0.02 1.67 16 26 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 27 H 0.08 2.50 7.02 -2.39 -0.02 2.48 16 28 H 0.04 2.06 7.17 -2.38 -0.02 2.04 16 29 H 0.03 1.30 7.04 -2.39 -0.02 1.29 16 30 H 0.27 16.02 8.31 -92.70 -0.77 15.25 16 31 H 0.43 10.06 8.84 -96.74 -0.85 9.20 16 32 H 0.43 2.80 9.10 -74.06 -0.67 2.12 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.30 7.96 -2.39 -0.02 1.28 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 1.02 7.73 -2.38 -0.02 1.00 16 Total: -1.00 -82.85 338.12 -2.02 -84.87 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -0.50 Total: 14.38 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 3.70 Total: -5.87 kcal Atomic # 7 Polarization: -131.72 SS G_CDS: -2.29 Total: -134.01 kcal Atomic # 8 Polarization: -110.08 SS G_CDS: -4.47 Total: -114.54 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Atomic # 16 Polarization: 108.43 SS G_CDS: -0.34 Total: 108.09 kcal Total: -82.85 -2.02 -84.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548563672.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.821 kcal (2) G-P(sol) polarization free energy of solvation -82.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds