Wall clock time and date at job start Fri Apr 10 2020 17:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46967 * 2 1 4 4 C 1.50696 * 109.46975 * 239.99624 * 2 1 3 5 5 H 1.08002 * 119.99732 * 245.61990 * 4 2 1 6 6 C 1.37871 * 120.00357 * 65.62157 * 4 2 1 7 7 N 1.31509 * 120.00259 * 197.39279 * 6 4 2 8 8 Si 1.86803 * 119.99926 * 17.67260 * 6 4 2 9 9 H 1.48496 * 109.47150 * 179.72502 * 8 6 4 10 10 H 1.48503 * 109.46851 * 299.72388 * 8 6 4 11 11 H 1.48501 * 109.47039 * 59.72060 * 8 6 4 12 12 N 1.46503 * 109.47011 * 119.99299 * 2 1 3 13 13 C 1.46496 * 119.99888 * 60.00250 * 12 2 1 14 14 S 1.65592 * 120.00057 * 239.99958 * 12 2 1 15 15 O 1.42098 * 106.40453 * 203.54174 * 14 12 2 16 16 O 1.42101 * 106.40383 * 336.46192 * 14 12 2 17 17 N 1.65597 * 107.22065 * 90.00426 * 14 12 2 18 18 C 1.46498 * 120.00231 * 64.99631 * 17 14 12 19 19 C 1.52996 * 109.47534 * 160.62740 * 18 17 14 20 20 C 1.50710 * 115.54897 * 279.36422 * 19 18 17 21 21 O 1.20826 * 119.99888 * 125.06850 * 20 19 18 22 22 O 1.34225 * 119.99873 * 305.07672 * 20 19 18 23 23 C 1.52999 * 117.50538 * 133.65837 * 19 18 17 24 24 C 1.52996 * 117.50007 * 65.03125 * 19 18 17 25 25 H 1.08993 * 109.47544 * 54.31802 * 1 2 3 26 26 H 1.09003 * 109.47333 * 174.32506 * 1 2 3 27 27 H 1.09003 * 109.47361 * 294.31838 * 1 2 3 28 28 H 0.96997 * 120.00373 * 355.23486 * 7 6 4 29 29 H 1.09002 * 109.47184 * 89.99928 * 13 12 2 30 30 H 1.08996 * 109.47386 * 209.99829 * 13 12 2 31 31 H 1.09001 * 109.47392 * 330.00214 * 13 12 2 32 32 H 0.97001 * 120.00227 * 245.00342 * 17 14 12 33 33 H 1.09005 * 109.47232 * 280.62740 * 18 17 14 34 34 H 1.09004 * 109.47222 * 40.62415 * 18 17 14 35 35 H 0.96699 * 117.00119 * 179.97438 * 22 20 19 36 36 H 1.09003 * 117.49059 * 0.02562 * 23 19 18 37 37 H 1.08996 * 117.50429 * 145.01669 * 23 19 18 38 38 H 1.09004 * 117.50095 * 214.98110 * 24 19 18 39 39 H 1.08998 * 117.50388 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5763 -1.6385 -1.1338 6 6 1.7974 -0.1759 -2.4793 7 7 1.9183 -0.9293 -3.5505 8 14 1.3152 1.6207 -2.6507 9 1 1.1272 1.9479 -4.0869 10 1 0.0472 1.8649 -1.9173 11 1 2.3877 2.4773 -2.0840 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0930 1.4282 14 16 2.9703 0.1144 2.2862 15 8 3.7117 -0.8786 2.9816 16 8 3.5794 1.1831 1.5747 17 7 1.9607 0.8093 3.3998 18 6 1.1509 -0.0348 4.2817 19 6 0.6989 0.7808 5.4947 20 6 1.7203 0.9337 6.5923 21 8 2.0302 2.0354 6.9798 22 8 2.2857 -0.1539 7.1392 23 6 -0.7712 0.6794 5.9063 24 6 -0.2487 1.9553 5.2429 25 1 -0.3634 0.5994 -0.8347 26 1 -0.3634 -1.0226 -0.1016 27 1 -0.3634 0.4232 0.9365 28 1 2.2391 -1.8410 -3.4685 29 1 2.4157 -2.7376 0.9720 30 1 1.6238 -2.2850 2.5004 31 1 0.6904 -2.3001 0.9848 32 1 1.9053 1.7753 3.4680 33 1 0.2764 -0.3937 3.7389 34 1 1.7448 -0.8853 4.6166 35 1 2.9356 -0.0056 7.8397 36 1 -1.4162 0.0312 5.3131 37 1 -0.9999 0.7231 6.9711 38 1 -0.1337 2.8385 5.8713 39 1 -0.5498 2.1472 4.2131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566740162.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:00 Heat of formation + Delta-G solvation = -136.661292 kcal Electronic energy + Delta-G solvation = -24545.884375 eV Core-core repulsion = 20809.616568 eV Total energy + Delta-G solvation = -3736.267807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82352 -37.97726 -36.81432 -36.40935 -36.29459 -35.36726 -34.11095 -32.57792 -29.87405 -27.27534 -25.80850 -24.65896 -24.57854 -22.94531 -20.75403 -20.29209 -18.91393 -18.28634 -17.65106 -17.57202 -17.14946 -16.68716 -16.05191 -15.75483 -15.05054 -14.71276 -14.32663 -14.07919 -13.71437 -13.45317 -13.28810 -12.98981 -12.80580 -12.16428 -12.13905 -11.97684 -11.88491 -11.81098 -11.79189 -11.64873 -11.59778 -11.28970 -11.01820 -10.90999 -10.81546 -10.63936 -10.47789 -9.97832 -9.78535 -9.52768 -9.16303 -8.42570 -8.09983 -6.49515 -4.12691 1.01595 1.83312 2.62794 3.09035 3.31246 3.45453 3.47105 3.59279 3.96231 4.07262 4.31636 4.41392 4.44331 4.81122 4.84078 5.10275 5.19157 5.20946 5.34600 5.39866 5.48751 5.52831 5.68308 5.78687 5.96588 6.18115 6.20537 6.30488 6.34378 6.49941 6.53824 6.88103 7.00278 7.27907 7.46301 7.62150 7.94467 8.34636 8.86923 9.55835 10.89076 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.004577 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.331301 B = 6115.475239 C = 6420.727021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.245 3.755 3 H 0.048 0.952 4 C -0.605 4.605 5 H 0.064 0.936 6 C 0.035 3.965 7 N -0.901 5.901 8 Si 1.034 2.966 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.276 1.276 12 N -0.983 5.983 13 C 0.110 3.890 14 S 2.778 3.222 15 O -0.990 6.990 16 O -0.972 6.972 17 N -1.135 6.135 18 C 0.163 3.837 19 C -0.151 4.151 20 C 0.519 3.481 21 O -0.511 6.511 22 O -0.507 6.507 23 C -0.139 4.139 24 C -0.139 4.139 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.026 0.974 28 H 0.268 0.732 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.414 0.586 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.412 0.588 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 1.838 19.825 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.140 3.860 3 H 0.065 0.935 4 C -0.644 4.644 5 H 0.082 0.918 6 C -0.171 4.171 7 N -0.535 5.535 8 Si 0.862 3.138 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.202 1.202 12 N -0.825 5.825 13 C -0.036 4.036 14 S 2.786 3.214 15 O -0.973 6.973 16 O -0.956 6.956 17 N -0.894 5.894 18 C 0.036 3.964 19 C -0.154 4.154 20 C 0.361 3.639 21 O -0.399 6.399 22 O -0.318 6.318 23 C -0.176 4.176 24 C -0.176 4.176 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.248 0.752 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.967 3.047 18.492 19.995 hybrid contribution 0.589 -0.790 1.616 1.893 sum -6.378 2.257 20.108 21.216 Atomic orbital electron populations 1.22563 0.98684 1.01583 0.99407 1.18992 0.90803 0.93083 0.83105 0.93480 1.22153 1.40935 1.10614 0.90716 0.91791 1.25678 0.94616 1.04896 0.91934 1.70858 1.41454 1.09834 1.31346 0.84232 0.77369 0.75736 0.76457 1.20846 1.19843 1.20167 1.57491 1.70105 1.19875 1.35068 1.21176 1.01867 0.81825 0.98764 1.02056 0.73616 0.73239 0.72447 1.93553 1.68764 1.60612 1.74360 1.93619 1.74066 1.56034 1.71842 1.56335 1.62697 1.17620 1.52779 1.20676 0.96220 0.92148 0.87365 1.21112 0.90995 1.07455 0.95787 1.22084 0.79549 0.81639 0.80595 1.90723 1.60666 1.27474 1.61050 1.84515 1.56015 1.38164 1.53107 1.23187 0.91001 1.00961 1.02486 1.23199 0.98192 0.92392 1.03803 0.91796 0.92811 0.95507 0.92141 0.93060 0.93144 0.90917 0.75234 0.90103 0.88875 0.72869 0.86575 0.87784 0.87127 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 8.72 37.16 0.32 -2.85 16 2 C 0.24 5.53 2.21 -69.08 -0.15 5.37 16 3 H 0.05 1.12 5.56 -51.93 -0.29 0.83 16 4 C -0.60 -16.38 8.67 -34.44 -0.30 -16.68 16 5 H 0.06 1.87 7.75 -52.49 -0.41 1.46 16 6 C 0.04 0.98 5.34 -17.82 -0.10 0.89 16 7 N -0.90 -26.94 13.70 55.43 0.76 -26.19 16 8 Si 1.03 24.50 26.44 -169.99 -4.49 20.00 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.27 -5.69 5.48 56.52 0.31 -5.38 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 N -0.98 -19.15 3.12 -115.86 -0.36 -19.51 16 13 C 0.11 1.85 9.47 59.84 0.57 2.41 16 14 S 2.78 51.95 6.09 -107.50 -0.66 51.30 16 15 O -0.99 -19.97 16.63 -57.17 -0.95 -20.93 16 16 O -0.97 -21.87 16.70 -57.17 -0.95 -22.82 16 17 N -1.14 -15.46 6.02 -10.61 -0.06 -15.52 16 18 C 0.16 1.78 6.17 -4.04 -0.02 1.75 16 19 C -0.15 -1.44 2.12 -155.66 -0.33 -1.77 16 20 C 0.52 5.84 7.65 36.01 0.28 6.11 16 21 O -0.51 -7.02 17.22 -18.75 -0.32 -7.34 16 22 O -0.51 -4.69 13.31 -39.24 -0.52 -5.21 16 23 C -0.14 -0.92 9.88 -26.73 -0.26 -1.19 16 24 C -0.14 -1.11 9.48 -26.73 -0.25 -1.36 16 25 H 0.06 1.30 4.80 -51.93 -0.25 1.05 16 26 H 0.05 1.02 6.91 -51.93 -0.36 0.66 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.27 8.00 8.73 -40.82 -0.36 7.64 16 29 H 0.05 0.93 8.09 -51.93 -0.42 0.50 16 30 H 0.05 0.68 7.79 -51.93 -0.40 0.27 16 31 H 0.07 1.16 6.55 -51.93 -0.34 0.82 16 32 H 0.41 5.09 8.46 -34.47 -0.29 4.80 16 33 H 0.08 0.73 7.94 -51.93 -0.41 0.32 16 34 H 0.09 1.07 7.54 -51.93 -0.39 0.68 16 35 H 0.41 2.06 9.10 45.56 0.41 2.48 16 36 H 0.12 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.11 0.92 7.82 -51.93 -0.41 0.51 16 39 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -36.21 338.17 -7.21 -43.42 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.49 Total: 5.01 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -0.25 Total: -7.31 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.33 Total: -61.22 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -2.75 Total: -56.30 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.49 Total: 20.00 kcal Atomic # 16 Polarization: 51.95 SS G_CDS: -0.66 Total: 51.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.21 -7.21 -43.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566740162.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.242 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds