Wall clock time and date at job start Fri Apr 10 2020 17:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46967 * 2 1 4 4 C 1.50696 * 109.46975 * 239.99624 * 2 1 3 5 5 H 1.08002 * 119.99732 * 245.61990 * 4 2 1 6 6 C 1.37871 * 120.00357 * 65.62157 * 4 2 1 7 7 N 1.31509 * 120.00259 * 197.39279 * 6 4 2 8 8 Si 1.86803 * 119.99926 * 17.67260 * 6 4 2 9 9 H 1.48496 * 109.47150 * 179.72502 * 8 6 4 10 10 H 1.48503 * 109.46851 * 299.72388 * 8 6 4 11 11 H 1.48501 * 109.47039 * 59.72060 * 8 6 4 12 12 N 1.46503 * 109.47011 * 119.99299 * 2 1 3 13 13 C 1.46496 * 119.99888 * 60.00250 * 12 2 1 14 14 S 1.65592 * 120.00057 * 239.99958 * 12 2 1 15 15 O 1.42098 * 106.40453 * 203.54174 * 14 12 2 16 16 O 1.42101 * 106.40383 * 336.46192 * 14 12 2 17 17 N 1.65597 * 107.22065 * 90.00426 * 14 12 2 18 18 C 1.46498 * 120.00231 * 64.99631 * 17 14 12 19 19 C 1.52996 * 109.47534 * 160.62740 * 18 17 14 20 20 C 1.50710 * 115.54897 * 279.36422 * 19 18 17 21 21 O 1.20826 * 119.99888 * 125.06850 * 20 19 18 22 22 O 1.34225 * 119.99873 * 305.07672 * 20 19 18 23 23 C 1.52999 * 117.50538 * 133.65837 * 19 18 17 24 24 C 1.52996 * 117.50007 * 65.03125 * 19 18 17 25 25 H 1.08993 * 109.47544 * 54.31802 * 1 2 3 26 26 H 1.09003 * 109.47333 * 174.32506 * 1 2 3 27 27 H 1.09003 * 109.47361 * 294.31838 * 1 2 3 28 28 H 0.96997 * 120.00373 * 355.23486 * 7 6 4 29 29 H 1.09002 * 109.47184 * 89.99928 * 13 12 2 30 30 H 1.08996 * 109.47386 * 209.99829 * 13 12 2 31 31 H 1.09001 * 109.47392 * 330.00214 * 13 12 2 32 32 H 0.97001 * 120.00227 * 245.00342 * 17 14 12 33 33 H 1.09005 * 109.47232 * 280.62740 * 18 17 14 34 34 H 1.09004 * 109.47222 * 40.62415 * 18 17 14 35 35 H 0.96699 * 117.00119 * 179.97438 * 22 20 19 36 36 H 1.09003 * 117.49059 * 0.02562 * 23 19 18 37 37 H 1.08996 * 117.50429 * 145.01669 * 23 19 18 38 38 H 1.09004 * 117.50095 * 214.98110 * 24 19 18 39 39 H 1.08998 * 117.50388 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5763 -1.6385 -1.1338 6 6 1.7974 -0.1759 -2.4793 7 7 1.9183 -0.9293 -3.5505 8 14 1.3152 1.6207 -2.6507 9 1 1.1272 1.9479 -4.0869 10 1 0.0472 1.8649 -1.9173 11 1 2.3877 2.4773 -2.0840 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0930 1.4282 14 16 2.9703 0.1144 2.2862 15 8 3.7117 -0.8786 2.9816 16 8 3.5794 1.1831 1.5747 17 7 1.9607 0.8093 3.3998 18 6 1.1509 -0.0348 4.2817 19 6 0.6989 0.7808 5.4947 20 6 1.7203 0.9337 6.5923 21 8 2.0302 2.0354 6.9798 22 8 2.2857 -0.1539 7.1392 23 6 -0.7712 0.6794 5.9063 24 6 -0.2487 1.9553 5.2429 25 1 -0.3634 0.5994 -0.8347 26 1 -0.3634 -1.0226 -0.1016 27 1 -0.3634 0.4232 0.9365 28 1 2.2391 -1.8410 -3.4685 29 1 2.4157 -2.7376 0.9720 30 1 1.6238 -2.2850 2.5004 31 1 0.6904 -2.3001 0.9848 32 1 1.9053 1.7753 3.4680 33 1 0.2764 -0.3937 3.7389 34 1 1.7448 -0.8853 4.6166 35 1 2.9356 -0.0056 7.8397 36 1 -1.4162 0.0312 5.3131 37 1 -0.9999 0.7231 6.9711 38 1 -0.1337 2.8385 5.8713 39 1 -0.5498 2.1472 4.2131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566740162.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:00 Heat of formation + Delta-G solvation = -167.217871 kcal Electronic energy + Delta-G solvation = -24547.209408 eV Core-core repulsion = 20809.616568 eV Total energy + Delta-G solvation = -3737.592839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60273 -38.73053 -38.38689 -38.01971 -37.13575 -36.96794 -35.09284 -34.59187 -31.56379 -28.11012 -27.25703 -26.57399 -25.42207 -23.46996 -22.46105 -21.05684 -20.31833 -19.56919 -19.17888 -18.88109 -18.47163 -17.89928 -17.07038 -16.84797 -16.29763 -15.76187 -15.41784 -15.38586 -15.06911 -14.97332 -14.66065 -14.21502 -13.96113 -13.79285 -13.64049 -13.45174 -13.30448 -13.22650 -13.00431 -12.91458 -12.64165 -12.48111 -12.46198 -12.17896 -11.85557 -11.76241 -11.53460 -11.49833 -11.34525 -11.09980 -10.59427 -10.40231 -9.84841 -8.68138 -6.33192 -0.44776 1.03898 1.44690 1.59073 1.72593 1.93369 1.98935 2.49238 2.50814 2.70880 3.10717 3.28837 3.49025 3.62043 3.82943 3.96622 4.16258 4.37264 4.51469 4.57167 4.66610 4.74633 4.76512 4.79684 4.85024 4.90382 4.97949 5.00573 5.11330 5.19429 5.37032 5.51775 5.61952 5.77064 6.02211 6.04101 6.09024 6.64025 6.91696 7.43865 8.67364 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.004577 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.331301 B = 6115.475239 C = 6420.727021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.243 3.757 3 H 0.040 0.960 4 C -0.605 4.605 5 H 0.025 0.975 6 C -0.016 4.016 7 N -0.936 5.936 8 Si 1.064 2.936 9 H -0.288 1.288 10 H -0.219 1.219 11 H -0.277 1.277 12 N -0.989 5.989 13 C 0.105 3.895 14 S 2.795 3.205 15 O -1.009 7.009 16 O -1.015 7.015 17 N -1.119 6.119 18 C 0.155 3.845 19 C -0.171 4.171 20 C 0.516 3.484 21 O -0.546 6.546 22 O -0.507 6.507 23 C -0.112 4.112 24 C -0.140 4.140 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.252 0.748 29 H 0.025 0.975 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.423 0.577 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.428 0.572 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.017 2.670 21.948 24.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.137 3.863 3 H 0.058 0.942 4 C -0.645 4.645 5 H 0.044 0.956 6 C -0.215 4.215 7 N -0.572 5.572 8 Si 0.885 3.115 9 H -0.214 1.214 10 H -0.142 1.142 11 H -0.203 1.203 12 N -0.831 5.831 13 C -0.041 4.041 14 S 2.804 3.196 15 O -0.992 6.992 16 O -0.999 6.999 17 N -0.882 5.882 18 C 0.030 3.970 19 C -0.174 4.174 20 C 0.360 3.640 21 O -0.436 6.436 22 O -0.321 6.321 23 C -0.150 4.150 24 C -0.177 4.177 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.259 0.741 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.289 0.711 36 H 0.158 0.842 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.674 3.837 20.656 23.130 hybrid contribution 1.528 -1.157 1.110 2.215 sum -8.146 2.681 21.765 23.394 Atomic orbital electron populations 1.22395 0.95408 1.02058 1.01575 1.18842 0.93133 0.92109 0.82184 0.94195 1.22415 1.39644 1.09246 0.93155 0.95648 1.27006 0.94562 1.08077 0.91850 1.70986 1.44279 1.09409 1.32545 0.83913 0.79593 0.71102 0.76889 1.21393 1.14239 1.20318 1.57384 1.70062 1.20968 1.34662 1.21352 1.01508 0.80081 1.01157 1.01266 0.73567 0.72344 0.72429 1.93525 1.69714 1.61391 1.74593 1.93554 1.75646 1.57387 1.73333 1.55844 1.62436 1.18266 1.51695 1.20973 0.96682 0.91663 0.87713 1.21119 0.92125 1.09177 0.94990 1.22527 0.79462 0.81338 0.80687 1.90708 1.61856 1.28663 1.62405 1.84491 1.56351 1.37591 1.53624 1.23379 0.88392 0.99792 1.03399 1.23284 0.97510 0.92323 1.04592 0.92456 0.92739 0.90912 0.93882 0.95592 0.89321 0.89792 0.74137 0.87060 0.89519 0.71065 0.84168 0.86937 0.87940 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.43 8.72 71.98 0.63 -4.80 16 2 C 0.24 10.57 2.21 44.24 0.10 10.66 16 3 H 0.04 1.83 5.56 -2.39 -0.01 1.81 16 4 C -0.61 -33.22 8.67 25.60 0.22 -33.00 16 5 H 0.03 1.54 7.75 -2.91 -0.02 1.52 16 6 C -0.02 -0.90 5.34 84.65 0.45 -0.45 16 7 N -0.94 -57.68 13.70 21.44 0.29 -57.39 16 8 Si 1.06 48.29 26.44 68.60 1.81 50.11 16 9 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.22 -8.09 5.48 99.48 0.55 -7.54 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.99 -36.95 3.12 -520.46 -1.62 -38.58 16 13 C 0.10 3.34 9.47 127.77 1.21 4.55 16 14 S 2.79 100.87 6.09 -56.49 -0.34 100.52 16 15 O -1.01 -39.78 16.63 -128.00 -2.13 -41.91 16 16 O -1.02 -45.35 16.70 -128.00 -2.14 -47.48 16 17 N -1.12 -27.36 6.02 -187.49 -1.13 -28.49 16 18 C 0.16 2.81 6.17 86.38 0.53 3.34 16 19 C -0.17 -2.71 2.12 -52.93 -0.11 -2.82 16 20 C 0.52 10.61 7.65 71.24 0.55 11.16 16 21 O -0.55 -14.41 17.22 21.96 0.38 -14.04 16 22 O -0.51 -8.45 13.31 -51.37 -0.68 -9.13 16 23 C -0.11 -0.99 9.88 30.59 0.30 -0.69 16 24 C -0.14 -1.73 9.48 30.59 0.29 -1.44 16 25 H 0.06 2.08 4.80 -2.39 -0.01 2.07 16 26 H 0.05 1.89 6.91 -2.39 -0.02 1.87 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.25 15.79 8.73 -92.71 -0.81 14.98 16 29 H 0.03 0.93 8.09 -2.39 -0.02 0.92 16 30 H 0.09 2.12 7.79 -2.39 -0.02 2.10 16 31 H 0.08 2.48 6.55 -2.39 -0.02 2.46 16 32 H 0.42 9.28 8.46 -96.74 -0.82 8.46 16 33 H 0.11 1.39 7.94 -2.38 -0.02 1.37 16 34 H 0.09 1.72 7.54 -2.38 -0.02 1.70 16 35 H 0.43 3.67 9.10 -74.06 -0.67 3.00 16 36 H 0.14 0.61 8.08 -2.39 -0.02 0.59 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 1.46 7.82 -2.38 -0.02 1.44 16 39 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -81.61 338.17 -1.98 -83.60 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -0.59 Total: 16.29 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 4.17 Total: -13.49 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -2.46 Total: -124.46 kcal Atomic # 8 Polarization: -107.99 SS G_CDS: -4.57 Total: -112.56 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 1.81 Total: 50.11 kcal Atomic # 16 Polarization: 100.87 SS G_CDS: -0.34 Total: 100.52 kcal Total: -81.61 -1.98 -83.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566740162.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.622 kcal (2) G-P(sol) polarization free energy of solvation -81.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds