Wall clock time and date at job start Fri Apr 10 2020 17:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99833 * 2 1 4 4 N 1.46500 * 109.47231 * 124.99383 * 3 2 1 5 5 C 1.46496 * 120.00653 * 282.08160 * 4 3 2 6 6 C 1.50692 * 109.47245 * 270.00313 * 5 4 3 7 7 H 1.07998 * 120.00065 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00333 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99338 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00343 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46725 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47091 * 119.99800 * 10 8 6 13 13 H 1.48501 * 109.46973 * 239.99894 * 10 8 6 14 14 C 1.34783 * 119.99421 * 102.07898 * 4 3 2 15 15 O 1.21506 * 119.99448 * 187.01412 * 14 4 3 16 16 C 1.48230 * 120.00198 * 7.01482 * 14 4 3 17 17 C 1.41636 * 120.27984 * 327.13093 * 16 14 4 18 18 C 1.34750 * 120.31807 * 179.97438 * 17 16 14 19 19 N 1.36404 * 120.91756 * 0.02562 * 18 17 16 20 20 H 0.97000 * 119.73116 * 179.97438 * 19 18 17 21 21 C 1.37397 * 120.53629 * 359.66503 * 19 18 17 22 22 N 1.31502 * 120.17199 * 180.32400 * 21 19 18 23 23 C 1.36838 * 120.27954 * 147.10967 * 16 14 4 24 24 N 1.48049 * 120.43744 * 0.02562 * 23 16 14 25 25 O 1.21799 * 119.99343 * 90.00296 * 24 23 16 26 26 O 1.21796 * 120.00245 * 269.72950 * 24 23 16 27 27 H 1.08004 * 120.00272 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00052 * 179.97438 * 1 2 3 29 29 H 1.07990 * 120.00345 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47047 * 5.00003 * 3 2 1 31 31 H 1.09000 * 109.47228 * 244.99846 * 3 2 1 32 32 H 1.09008 * 109.47010 * 30.00059 * 5 4 3 33 33 H 1.09000 * 109.47183 * 149.99347 * 5 4 3 34 34 H 0.97006 * 119.99199 * 179.97438 * 9 8 6 35 35 H 1.07995 * 119.84463 * 0.02562 * 17 16 14 36 36 H 1.07995 * 119.53874 * 179.97438 * 18 17 16 37 37 H 0.97005 * 119.99669 * 0.29186 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.4975 1.6114 2.4813 6 6 2.5412 3.0961 2.7352 7 1 2.9028 3.7648 1.9681 8 6 2.1195 3.6011 3.9470 9 7 1.6787 2.7868 4.8810 10 14 2.1743 5.4415 4.2621 11 1 2.7076 6.1335 3.0612 12 1 0.8039 5.9353 4.5508 13 1 3.0556 5.7186 5.4248 14 6 4.3060 1.0997 0.9306 15 8 5.0568 0.9954 1.8802 16 6 4.8333 0.9714 -0.4488 17 6 4.0303 0.4088 -1.4709 18 6 4.5087 0.2923 -2.7252 19 7 5.7693 0.7104 -3.0362 20 1 6.0963 0.6180 -3.9447 21 6 6.5772 1.2673 -2.0745 22 7 7.7890 1.6738 -2.3836 23 6 6.0999 1.3958 -0.7455 24 7 6.9584 1.9870 0.3058 25 8 7.6869 1.2721 0.9704 26 8 6.9398 3.1888 0.5028 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.4704 1.2575 2.5714 33 1 3.1236 1.0992 3.2118 34 1 1.3824 3.1420 5.7336 35 1 3.0294 0.0724 -1.2442 36 1 3.8857 -0.1389 -3.4948 37 1 8.1130 1.5847 -3.2936 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570175704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:08 Heat of formation + Delta-G solvation = 50.171133 kcal Electronic energy + Delta-G solvation = -25634.560567 eV Core-core repulsion = 21803.243222 eV Total energy + Delta-G solvation = -3831.317345 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.30102 -41.98197 -40.71478 -37.77443 -37.49273 -36.08377 -35.14495 -34.86877 -33.81646 -31.04568 -29.84716 -28.08251 -27.10715 -26.44538 -24.51001 -23.71741 -21.64188 -20.88511 -20.57138 -19.79544 -19.46229 -18.91888 -18.71203 -18.50673 -17.75578 -17.36000 -16.59548 -16.54517 -16.32343 -15.76280 -15.37081 -15.16533 -14.72996 -14.36410 -14.25832 -13.64113 -13.38936 -13.02045 -12.81375 -12.78644 -12.64717 -12.39599 -12.30172 -12.23613 -12.19329 -12.13523 -11.98878 -11.69288 -11.24734 -11.07673 -10.69017 -10.32914 -9.71867 -8.98637 -8.29240 -6.43402 -1.19202 -0.55597 0.30465 0.33510 1.26021 1.29909 1.33288 1.38578 1.49312 1.65393 1.82917 2.09666 2.35002 2.87660 3.02132 3.13110 3.43729 3.66296 4.01647 4.05961 4.15230 4.21424 4.35825 4.57831 4.75077 4.86251 4.88539 5.08792 5.13240 5.19307 5.25980 5.34243 5.66672 5.73600 5.88970 5.91787 5.95877 6.33716 6.43644 6.63198 6.89577 6.90899 7.27492 8.78663 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.013341 B = 0.005728 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.261657 B = 4887.405514 C = 6282.534840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.195 4.195 3 C 0.089 3.911 4 N -0.567 5.567 5 C 0.263 3.737 6 C -0.550 4.550 7 H 0.049 0.951 8 C 0.016 3.984 9 N -0.922 5.922 10 Si 0.962 3.038 11 H -0.271 1.271 12 H -0.261 1.261 13 H -0.283 1.283 14 C 0.511 3.489 15 O -0.573 6.573 16 C 0.061 3.939 17 C -0.282 4.282 18 C 0.250 3.750 19 N -0.594 5.594 20 H 0.451 0.549 21 C 0.448 3.552 22 N -0.785 5.785 23 C -0.105 4.105 24 N 0.056 4.944 25 O -0.143 6.143 26 O -0.189 6.189 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.040 0.960 33 H -0.001 1.001 34 H 0.269 0.731 35 H 0.210 0.790 36 H 0.268 0.732 37 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 -9.647 -26.246 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.213 4.213 3 C -0.031 4.031 4 N -0.295 5.295 5 C 0.143 3.857 6 C -0.588 4.588 7 H 0.067 0.933 8 C -0.184 4.184 9 N -0.561 5.561 10 Si 0.786 3.214 11 H -0.195 1.195 12 H -0.185 1.185 13 H -0.209 1.209 14 C 0.297 3.703 15 O -0.454 6.454 16 C 0.051 3.949 17 C -0.307 4.307 18 C 0.117 3.883 19 N -0.216 5.216 20 H 0.295 0.705 21 C 0.176 3.824 22 N -0.421 5.421 23 C -0.194 4.194 24 N 0.585 4.415 25 O -0.372 6.372 26 O -0.404 6.404 27 H 0.117 0.883 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.097 0.903 31 H 0.160 0.840 32 H 0.058 0.942 33 H 0.017 0.983 34 H 0.078 0.922 35 H 0.226 0.774 36 H 0.284 0.716 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.121 -9.460 -25.569 27.441 hybrid contribution 0.418 0.907 0.534 1.133 sum -2.702 -8.552 -25.034 26.593 Atomic orbital electron populations 1.24134 0.95430 1.03190 0.95933 1.23136 0.96751 0.97579 1.03857 1.22006 0.93285 0.97620 0.90218 1.48116 1.05561 1.64751 1.11083 1.18856 0.94027 0.95020 0.77832 1.21658 1.43643 0.92946 1.00590 0.93282 1.25757 0.94304 1.03073 0.95310 1.70035 1.43317 1.36652 1.06064 0.85453 0.78441 0.79361 0.78136 1.19528 1.18548 1.20912 1.18958 0.83792 0.79032 0.88488 1.90887 1.58145 1.51930 1.44389 1.20237 0.90187 0.89158 0.95337 1.21638 1.04409 1.13573 0.91065 1.23486 0.83229 0.83624 0.97936 1.43466 1.13301 1.51987 1.12896 0.70473 1.18065 0.87939 0.90365 0.86076 1.70666 1.10480 1.31921 1.29019 1.19979 0.93001 1.18157 0.88228 1.43028 0.98865 0.99955 0.99689 1.94456 1.36407 1.60120 1.46208 1.94497 1.72843 0.98901 1.74189 0.88348 0.85975 0.85567 0.90297 0.83973 0.94193 0.98310 0.92193 0.77390 0.71596 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 14.32 67.78 0.97 -1.68 16 2 C -0.19 -3.94 8.25 25.65 0.21 -3.73 16 3 C 0.09 2.39 5.36 85.63 0.46 2.84 16 4 N -0.57 -23.78 2.47 -833.48 -2.05 -25.83 16 5 C 0.26 14.20 5.18 85.63 0.44 14.65 16 6 C -0.55 -32.43 9.39 25.60 0.24 -32.19 16 7 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 8 C 0.02 0.91 5.46 84.66 0.46 1.37 16 9 N -0.92 -56.10 13.29 21.45 0.28 -55.81 16 10 Si 0.96 46.44 29.54 68.60 2.03 48.46 16 11 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 13 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 14 C 0.51 22.85 7.31 86.90 0.64 23.48 16 15 O -0.57 -32.73 14.70 7.57 0.11 -32.62 16 16 C 0.06 1.93 5.52 -20.11 -0.11 1.82 16 17 C -0.28 -4.04 7.39 22.31 0.16 -3.88 16 18 C 0.25 0.60 11.17 83.18 0.93 1.53 16 19 N -0.59 -4.44 5.38 -192.33 -1.04 -5.47 16 20 H 0.45 -0.88 8.82 -92.71 -0.82 -1.70 16 21 C 0.45 10.92 7.78 134.53 1.05 11.97 16 22 N -0.79 -21.63 13.85 -55.14 -0.76 -22.39 16 23 C -0.11 -3.77 6.18 36.92 0.23 -3.54 16 24 N 0.06 2.68 2.75 -45.14 -0.12 2.56 16 25 O -0.14 -7.25 18.56 23.16 0.43 -6.82 16 26 O -0.19 -9.79 19.26 18.89 0.36 -9.43 16 27 H 0.10 1.83 7.84 -2.91 -0.02 1.80 16 28 H 0.12 1.63 8.06 -2.91 -0.02 1.61 16 29 H 0.13 2.19 7.69 -2.92 -0.02 2.16 16 30 H 0.08 2.28 7.79 -2.38 -0.02 2.27 16 31 H 0.14 2.66 3.84 -2.54 -0.01 2.65 16 32 H 0.04 2.12 8.00 -2.38 -0.02 2.11 16 33 H 0.00 -0.08 7.34 -2.39 -0.02 -0.10 16 34 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 35 H 0.21 2.22 3.48 -2.91 -0.01 2.21 16 36 H 0.27 -3.55 8.06 -2.91 -0.02 -3.57 16 37 H 0.36 6.74 8.82 -92.70 -0.82 5.93 16 Total: -1.00 -102.53 330.26 4.44 -98.09 By element: Atomic # 1 Polarization: -2.91 SS G_CDS: -0.48 Total: -3.38 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 5.68 Total: 12.65 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -3.69 Total: -106.95 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: 0.90 Total: -48.87 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -102.53 4.44 -98.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570175704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.261 kcal (2) G-P(sol) polarization free energy of solvation -102.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds