Wall clock time and date at job start Fri Apr 10 2020 17:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99952 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00039 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00055 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99885 * 3 2 1 7 7 C 1.38950 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99959 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00078 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46960 * 180.02562 * 12 10 9 14 14 S 1.65602 * 119.99647 * 165.00488 * 13 12 10 15 15 O 1.42101 * 104.27375 * 181.06887 * 14 13 12 16 16 O 1.42098 * 104.27490 * 308.92633 * 14 13 12 17 17 C 1.81394 * 104.44915 * 64.99935 * 14 13 12 18 18 C 1.53000 * 109.46846 * 179.97438 * 17 14 13 19 19 C 1.53009 * 109.47131 * 179.97438 * 18 17 14 20 20 H 1.08996 * 110.27347 * 54.30187 * 19 18 17 21 21 C 1.54949 * 110.30954 * 176.39054 * 19 18 17 22 22 C 1.55419 * 100.89192 * 155.28613 * 21 19 18 23 23 C 1.54381 * 102.30738 * 325.99141 * 22 21 19 24 24 O 1.43242 * 107.59237 * 21.28482 * 23 22 21 25 25 H 0.96996 * 120.00340 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00486 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47178 * 300.00469 * 12 10 9 28 28 H 1.09006 * 109.46629 * 60.00665 * 12 10 9 29 29 H 0.96998 * 119.99529 * 345.00203 * 13 12 10 30 30 H 1.09003 * 109.47253 * 299.99569 * 17 14 13 31 31 H 1.09007 * 109.47457 * 59.99924 * 17 14 13 32 32 H 1.08995 * 109.47441 * 299.99927 * 18 17 14 33 33 H 1.08998 * 109.46977 * 60.00154 * 18 17 14 34 34 H 1.08996 * 111.12473 * 273.28088 * 21 19 18 35 35 H 1.09006 * 111.12476 * 37.44232 * 21 19 18 36 36 H 1.08997 * 110.88000 * 207.75460 * 22 21 19 37 37 H 1.09000 * 110.92786 * 84.25086 * 22 21 19 38 38 H 1.09004 * 109.83420 * 261.76935 * 23 22 21 39 39 H 1.09003 * 109.90617 * 140.84212 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4402 -0.7000 6 1 1.4456 2.6527 -0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0034 13 7 2.1957 -5.9765 0.0036 14 16 1.6810 -7.5057 0.3765 15 8 2.8574 -8.2993 0.3015 16 8 0.9791 -7.3500 1.6021 17 6 0.5358 -7.9369 -0.9626 18 6 -0.0139 -9.3456 -0.7296 19 6 -0.9804 -9.7091 -1.8587 20 1 -0.4946 -9.5846 -2.8264 21 6 -1.4795 -11.1664 -1.6911 22 6 -2.8323 -11.1031 -2.4536 23 6 -3.3106 -9.6657 -2.1563 24 8 -2.1616 -8.8950 -1.7853 25 1 -0.4850 -0.8400 -0.0004 26 1 0.3533 -2.3906 0.0016 27 1 0.6180 -4.9200 0.8940 28 1 0.6160 -4.9212 -0.8860 29 1 3.1274 -5.8179 -0.2147 30 1 -0.2880 -7.2233 -0.9801 31 1 1.0634 -7.9062 -1.9160 32 1 0.8100 -10.0589 -0.7123 33 1 -0.5414 -9.3766 0.2237 34 1 -0.7948 -11.8726 -2.1606 35 1 -1.6330 -11.4106 -0.6399 36 1 -3.5358 -11.8356 -2.0582 37 1 -2.6833 -11.2489 -3.5235 38 1 -4.0287 -9.6770 -1.3363 39 1 -3.7721 -9.2366 -3.0458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586775527.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:14 Heat of formation + Delta-G solvation = -164.772208 kcal Electronic energy + Delta-G solvation = -22973.440333 eV Core-core repulsion = 19235.953546 eV Total energy + Delta-G solvation = -3737.486787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.85870 -38.57405 -37.05019 -35.91833 -34.90035 -34.28643 -33.88634 -32.50062 -31.20355 -28.92173 -27.06615 -24.43426 -24.12578 -22.05828 -21.42960 -20.03376 -19.25871 -18.07921 -17.85484 -17.36618 -16.85424 -16.27576 -15.98538 -15.68672 -15.35060 -14.92126 -14.70372 -14.39893 -14.16394 -13.85539 -13.72448 -13.52342 -12.79442 -12.68459 -12.39550 -12.23543 -12.07732 -11.98646 -11.94316 -11.86450 -11.82272 -11.41877 -11.28752 -11.26498 -11.00443 -10.61790 -10.24824 -9.95090 -9.87633 -9.65663 -9.37459 -8.63625 -8.13840 -6.83038 -3.97359 0.25441 2.75595 3.25712 3.32608 3.37099 3.51781 3.68503 3.74770 4.02717 4.13736 4.19545 4.23496 4.41937 4.49410 4.59819 4.70484 4.72819 4.83765 4.98664 5.16877 5.19431 5.23422 5.28426 5.32790 5.36396 5.43635 5.52115 5.59959 5.67697 5.72864 5.74384 6.08081 6.65950 7.22748 7.71077 7.99786 8.48755 8.67057 9.36395 9.71639 10.60060 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.019789 B = 0.002970 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.582926 B = 9425.632165 C =10520.648479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.006 4.006 3 Si 1.095 2.905 4 H -0.283 1.283 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.385 4.385 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.437 3.563 11 O -0.583 6.583 12 C 0.103 3.897 13 N -1.100 6.100 14 S 2.616 3.384 15 O -0.961 6.961 16 O -0.956 6.956 17 C -0.630 4.630 18 C -0.111 4.111 19 C 0.088 3.912 20 H 0.077 0.923 21 C -0.156 4.156 22 C -0.157 4.157 23 C 0.049 3.951 24 O -0.377 6.377 25 H 0.263 0.737 26 H 0.379 0.621 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.426 0.574 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.239 -21.573 -5.886 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.210 4.210 3 Si 0.920 3.080 4 H -0.210 1.210 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.514 4.514 8 H 0.119 0.881 9 N -0.203 5.203 10 C 0.222 3.778 11 O -0.467 6.467 12 C -0.027 4.027 13 N -0.864 5.864 14 S 2.707 3.293 15 O -0.951 6.951 16 O -0.946 6.946 17 C -0.759 4.759 18 C -0.149 4.149 19 C 0.030 3.970 20 H 0.095 0.905 21 C -0.193 4.193 22 C -0.194 4.194 23 C -0.028 4.028 24 O -0.296 6.296 25 H 0.074 0.926 26 H 0.212 0.788 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.265 0.735 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.523 -20.178 -5.031 21.795 hybrid contribution -0.505 -1.649 -0.871 1.932 sum -7.028 -21.826 -5.902 23.677 Atomic orbital electron populations 1.70873 1.06543 1.29608 1.46397 1.26573 0.96517 1.02741 0.95139 0.83079 0.74366 0.73259 0.77263 1.20985 1.20870 1.20569 1.20604 0.94812 0.83658 1.52370 0.88060 1.41894 1.08398 1.05467 1.64506 1.19541 0.88378 0.84451 0.85422 1.90516 1.13618 1.86463 1.56124 1.20961 0.91562 0.87557 1.02668 1.55176 1.20056 1.22683 1.88444 1.04791 0.75208 0.72981 0.76270 1.93593 1.45325 1.68623 1.87552 1.93601 1.76152 1.84937 1.39882 1.30633 1.17672 1.06617 1.20986 1.21482 0.99475 0.93485 1.00508 1.22915 0.86902 0.89151 0.98068 0.90503 1.23378 0.96993 0.96933 1.02043 1.23137 0.97392 0.97518 1.01371 1.23138 0.88985 0.90396 1.00241 1.88452 1.14985 1.36448 1.89747 0.92551 0.78793 0.88720 0.90287 0.73501 0.84173 0.84756 0.89005 0.89389 0.89507 0.89859 0.89901 0.90455 0.91160 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 13.68 55.50 0.76 -23.80 16 2 C -0.01 -0.17 5.50 -17.47 -0.10 -0.27 16 3 Si 1.09 23.89 29.92 -169.99 -5.09 18.80 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.39 -10.61 9.68 -14.93 -0.14 -10.75 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.57 -13.84 5.28 -10.97 -0.06 -13.90 16 10 C 0.44 10.04 7.85 -10.98 -0.09 9.96 16 11 O -0.58 -15.43 15.30 5.55 0.08 -15.35 16 12 C 0.10 1.72 6.61 -5.19 -0.03 1.69 16 13 N -1.10 -17.24 5.82 -11.65 -0.07 -17.31 16 14 S 2.62 35.29 5.46 -107.50 -0.59 34.70 16 15 O -0.96 -15.25 18.08 -57.54 -1.04 -16.29 16 16 O -0.96 -15.94 17.50 -57.54 -1.01 -16.94 16 17 C -0.63 -6.08 6.00 37.16 0.22 -5.86 16 18 C -0.11 -0.97 4.96 -26.73 -0.13 -1.10 16 19 C 0.09 0.73 3.41 -25.70 -0.09 0.64 16 20 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 21 C -0.16 -0.94 6.58 -24.42 -0.16 -1.10 16 22 C -0.16 -0.86 7.02 -24.72 -0.17 -1.03 16 23 C 0.05 0.37 7.80 37.88 0.30 0.66 16 24 O -0.38 -3.89 10.75 -35.23 -0.38 -4.27 16 25 H 0.26 6.89 6.78 -40.82 -0.28 6.61 16 26 H 0.38 8.42 6.73 -40.82 -0.27 8.14 16 27 H 0.09 1.48 7.69 -51.93 -0.40 1.08 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.43 7.17 7.67 -34.48 -0.26 6.90 16 30 H 0.14 1.31 7.95 -51.92 -0.41 0.90 16 31 H 0.13 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -36.90 341.96 -8.07 -44.97 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.44 Total: 11.40 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -0.40 Total: -7.17 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.63 Total: -55.01 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -2.34 Total: -52.85 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.09 Total: 18.80 kcal Atomic # 16 Polarization: 35.29 SS G_CDS: -0.59 Total: 34.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.90 -8.07 -44.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586775527.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.804 kcal (2) G-P(sol) polarization free energy of solvation -36.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds