Wall clock time and date at job start Fri Apr 10 2020 17:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99952 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00039 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00055 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99885 * 3 2 1 7 7 C 1.38950 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99959 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00078 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46960 * 180.02562 * 12 10 9 14 14 S 1.65602 * 119.99647 * 165.00488 * 13 12 10 15 15 O 1.42101 * 104.27375 * 181.06887 * 14 13 12 16 16 O 1.42098 * 104.27490 * 308.92633 * 14 13 12 17 17 C 1.81394 * 104.44915 * 64.99935 * 14 13 12 18 18 C 1.53000 * 109.46846 * 179.97438 * 17 14 13 19 19 C 1.53009 * 109.47131 * 179.97438 * 18 17 14 20 20 H 1.08996 * 110.27347 * 54.30187 * 19 18 17 21 21 C 1.54949 * 110.30954 * 176.39054 * 19 18 17 22 22 C 1.55419 * 100.89192 * 155.28613 * 21 19 18 23 23 C 1.54381 * 102.30738 * 325.99141 * 22 21 19 24 24 O 1.43242 * 107.59237 * 21.28482 * 23 22 21 25 25 H 0.96996 * 120.00340 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00486 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47178 * 300.00469 * 12 10 9 28 28 H 1.09006 * 109.46629 * 60.00665 * 12 10 9 29 29 H 0.96998 * 119.99529 * 345.00203 * 13 12 10 30 30 H 1.09003 * 109.47253 * 299.99569 * 17 14 13 31 31 H 1.09007 * 109.47457 * 59.99924 * 17 14 13 32 32 H 1.08995 * 109.47441 * 299.99927 * 18 17 14 33 33 H 1.08998 * 109.46977 * 60.00154 * 18 17 14 34 34 H 1.08996 * 111.12473 * 273.28088 * 21 19 18 35 35 H 1.09006 * 111.12476 * 37.44232 * 21 19 18 36 36 H 1.08997 * 110.88000 * 207.75460 * 22 21 19 37 37 H 1.09000 * 110.92786 * 84.25086 * 22 21 19 38 38 H 1.09004 * 109.83420 * 261.76935 * 23 22 21 39 39 H 1.09003 * 109.90617 * 140.84212 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4402 -0.7000 6 1 1.4456 2.6527 -0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0034 13 7 2.1957 -5.9765 0.0036 14 16 1.6810 -7.5057 0.3765 15 8 2.8574 -8.2993 0.3015 16 8 0.9791 -7.3500 1.6021 17 6 0.5358 -7.9369 -0.9626 18 6 -0.0139 -9.3456 -0.7296 19 6 -0.9804 -9.7091 -1.8587 20 1 -0.4946 -9.5846 -2.8264 21 6 -1.4795 -11.1664 -1.6911 22 6 -2.8323 -11.1031 -2.4536 23 6 -3.3106 -9.6657 -2.1563 24 8 -2.1616 -8.8950 -1.7853 25 1 -0.4850 -0.8400 -0.0004 26 1 0.3533 -2.3906 0.0016 27 1 0.6180 -4.9200 0.8940 28 1 0.6160 -4.9212 -0.8860 29 1 3.1274 -5.8179 -0.2147 30 1 -0.2880 -7.2233 -0.9801 31 1 1.0634 -7.9062 -1.9160 32 1 0.8100 -10.0589 -0.7123 33 1 -0.5414 -9.3766 0.2237 34 1 -0.7948 -11.8726 -2.1606 35 1 -1.6330 -11.4106 -0.6399 36 1 -3.5358 -11.8356 -2.0582 37 1 -2.6833 -11.2489 -3.5235 38 1 -4.0287 -9.6770 -1.3363 39 1 -3.7721 -9.2366 -3.0458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586775527.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:14 Heat of formation + Delta-G solvation = -195.534315 kcal Electronic energy + Delta-G solvation = -22974.774279 eV Core-core repulsion = 19235.953546 eV Total energy + Delta-G solvation = -3738.820732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43199 -40.42273 -38.24450 -37.11051 -36.67933 -35.48444 -34.98411 -33.19944 -33.01061 -29.53979 -28.64884 -26.03862 -25.09529 -22.52524 -22.03555 -21.82898 -20.39065 -20.06126 -19.16535 -18.09619 -17.91469 -17.40219 -17.18232 -16.74710 -16.62393 -16.23377 -15.99979 -15.69338 -15.44283 -15.07172 -14.52092 -14.39287 -14.07465 -13.95131 -13.43531 -13.38603 -13.28722 -13.18382 -13.13620 -12.80566 -12.74177 -12.55915 -12.48875 -11.99410 -11.94363 -11.90844 -11.68506 -11.57614 -11.48172 -10.70583 -10.49382 -10.41430 -10.14936 -8.94581 -6.09969 -0.80979 1.49569 1.55413 1.61522 1.83129 1.92722 2.40840 2.70797 2.82629 2.94748 3.14242 3.20866 3.47413 3.57178 3.82215 3.85716 3.91368 4.01150 4.19179 4.26578 4.30924 4.35934 4.42786 4.60037 4.67449 4.68959 4.81047 4.88361 4.93750 5.01742 5.07252 5.26605 5.59491 5.90139 5.94089 6.09716 6.51788 6.66709 7.37481 7.81481 8.53010 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.019789 B = 0.002970 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.582926 B = 9425.632165 C =10520.648479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.038 4.038 3 Si 1.135 2.865 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.413 4.413 8 H 0.075 0.925 9 N -0.577 5.577 10 C 0.436 3.564 11 O -0.622 6.622 12 C 0.110 3.890 13 N -1.110 6.110 14 S 2.622 3.378 15 O -0.988 6.988 16 O -0.993 6.993 17 C -0.601 4.601 18 C -0.122 4.122 19 C 0.082 3.918 20 H 0.087 0.913 21 C -0.155 4.155 22 C -0.151 4.151 23 C 0.039 3.961 24 O -0.405 6.405 25 H 0.262 0.738 26 H 0.389 0.611 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.421 0.579 30 H 0.150 0.850 31 H 0.161 0.839 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 -22.847 -7.081 25.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.237 4.237 3 Si 0.955 3.045 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.542 4.542 8 H 0.093 0.907 9 N -0.215 5.215 10 C 0.223 3.777 11 O -0.509 6.509 12 C -0.020 4.020 13 N -0.870 5.870 14 S 2.719 3.281 15 O -0.978 6.978 16 O -0.984 6.984 17 C -0.735 4.735 18 C -0.161 4.161 19 C 0.024 3.976 20 H 0.105 0.895 21 C -0.193 4.193 22 C -0.189 4.189 23 C -0.037 4.037 24 O -0.326 6.326 25 H 0.073 0.927 26 H 0.224 0.776 27 H 0.126 0.874 28 H 0.143 0.857 29 H 0.257 0.743 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.592 -21.462 -6.185 23.590 hybrid contribution -0.209 -1.389 -0.528 1.501 sum -7.801 -22.851 -6.713 25.062 Atomic orbital electron populations 1.70936 1.06974 1.29800 1.47389 1.27820 0.96679 1.05305 0.93935 0.82593 0.73688 0.70210 0.77983 1.19780 1.20201 1.19654 1.20569 0.94040 0.85476 1.54126 0.90667 1.41925 1.08910 1.05336 1.65340 1.20634 0.88292 0.85999 0.82782 1.90491 1.15776 1.87489 1.57095 1.21020 0.91305 0.84149 1.05527 1.55252 1.19760 1.23158 1.88875 1.04538 0.75032 0.71864 0.76617 1.93552 1.47371 1.68711 1.88198 1.93548 1.76488 1.85121 1.43194 1.30391 1.16283 1.07614 1.19185 1.21690 1.00414 0.93078 1.00935 1.23052 0.86319 0.90252 0.97986 0.89541 1.23416 0.97526 0.95893 1.02440 1.23139 0.97300 0.96462 1.01963 1.23307 0.88435 0.91533 1.00461 1.88410 1.16159 1.37960 1.90025 0.92656 0.77597 0.87377 0.85717 0.74284 0.83152 0.82063 0.87240 0.89714 0.87763 0.89850 0.88599 0.89572 0.91120 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.73 13.68 21.66 0.30 -49.43 16 2 C -0.04 -2.04 5.50 84.93 0.47 -1.57 16 3 Si 1.14 47.79 29.92 68.60 2.05 49.84 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.41 -23.11 9.68 84.04 0.81 -22.29 16 8 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 9 N -0.58 -28.37 5.28 -306.99 -1.62 -29.99 16 10 C 0.44 20.02 7.85 87.66 0.69 20.70 16 11 O -0.62 -33.55 15.30 -3.07 -0.05 -33.60 16 12 C 0.11 3.51 6.61 85.63 0.57 4.08 16 13 N -1.11 -33.74 5.82 -190.78 -1.11 -34.85 16 14 S 2.62 67.76 5.46 -56.49 -0.31 67.45 16 15 O -0.99 -30.73 18.08 -127.65 -2.31 -33.04 16 16 O -0.99 -32.63 17.50 -127.65 -2.23 -34.86 16 17 C -0.60 -9.86 6.00 71.98 0.43 -9.43 16 18 C -0.12 -1.82 4.96 30.60 0.15 -1.67 16 19 C 0.08 1.12 3.41 31.26 0.11 1.23 16 20 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 21 C -0.16 -1.43 6.58 32.09 0.21 -1.22 16 22 C -0.15 -1.25 7.02 31.90 0.22 -1.03 16 23 C 0.04 0.51 7.80 72.45 0.56 1.07 16 24 O -0.41 -7.50 10.75 -148.98 -1.60 -9.10 16 25 H 0.26 13.71 6.78 -92.71 -0.63 13.08 16 26 H 0.39 17.23 6.73 -92.71 -0.62 16.61 16 27 H 0.11 3.20 7.69 -2.39 -0.02 3.19 16 28 H 0.13 2.87 8.14 -2.38 -0.02 2.85 16 29 H 0.42 14.12 7.67 -96.74 -0.74 13.37 16 30 H 0.15 2.31 7.95 -2.39 -0.02 2.29 16 31 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 0.76 8.06 -2.38 -0.02 0.74 16 36 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -80.58 341.96 -2.80 -83.38 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.14 Total: 34.33 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 4.22 Total: -10.13 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -2.44 Total: -114.27 kcal Atomic # 8 Polarization: -104.41 SS G_CDS: -6.19 Total: -110.60 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.05 Total: 49.84 kcal Atomic # 16 Polarization: 67.76 SS G_CDS: -0.31 Total: 67.45 kcal Total: -80.58 -2.80 -83.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586775527.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.153 kcal (2) G-P(sol) polarization free energy of solvation -80.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds