Wall clock time and date at job start Fri Apr 10 2020 17:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00212 * 2 1 4 4 H 1.48505 * 109.47056 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47140 * 299.99209 * 3 2 1 6 6 H 1.48496 * 109.47367 * 59.99811 * 3 2 1 7 7 C 1.37881 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00015 * 0.02562 * 7 2 1 10 10 O 1.42895 * 110.78642 * 303.24187 * 9 7 2 11 11 C 1.55405 * 110.85075 * 66.54004 * 9 7 2 12 12 C 1.54914 * 101.66697 * 153.69831 * 11 9 7 13 13 N 1.47426 * 104.82992 * 323.07703 * 12 11 9 14 14 S 1.65602 * 125.64425 * 204.09243 * 13 12 11 15 15 O 1.42099 * 106.40482 * 23.57900 * 14 13 12 16 16 O 1.42102 * 106.40071 * 156.50151 * 14 13 12 17 17 N 1.65595 * 107.21862 * 270.03702 * 14 13 12 18 18 C 1.47155 * 120.98492 * 269.72300 * 17 14 13 19 19 C 1.53715 * 108.16136 * 129.43133 * 18 17 14 20 20 O 1.42962 * 109.14585 * 52.53813 * 19 18 17 21 21 C 1.42963 * 114.16877 * 297.28597 * 20 19 18 22 22 C 1.47152 * 120.98105 * 90.00320 * 17 14 13 23 23 C 1.47018 * 108.70517 * 24.12623 * 13 12 11 24 24 H 0.97008 * 119.99755 * 0.02562 * 1 2 3 25 25 H 0.96705 * 114.00290 * 56.75274 * 10 9 7 26 26 H 1.09000 * 110.89538 * 35.62635 * 11 9 7 27 27 H 1.09000 * 111.06973 * 271.84478 * 11 9 7 28 28 H 1.08999 * 110.37121 * 204.23438 * 12 11 9 29 29 H 1.09003 * 110.36718 * 81.91343 * 12 11 9 30 30 H 1.09003 * 109.67801 * 249.21107 * 18 17 14 31 31 H 1.09001 * 109.68140 * 9.76128 * 18 17 14 32 32 H 1.08999 * 109.65466 * 292.56899 * 19 18 17 33 33 H 1.09003 * 109.48371 * 172.39840 * 19 18 17 34 34 H 1.08998 * 109.50815 * 302.65765 * 21 20 19 35 35 H 1.08994 * 109.55195 * 182.53168 * 21 20 19 36 36 H 1.09003 * 109.68121 * 350.23649 * 22 17 14 37 37 H 1.09001 * 109.68222 * 110.79029 * 22 17 14 38 38 H 1.09002 * 109.88241 * 118.36067 * 23 13 12 39 39 H 1.09000 * 109.88049 * 239.37196 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 0.3627 -2.5718 1.1175 11 6 0.4741 -2.6893 -1.3320 12 6 0.3829 -4.2331 -1.4237 13 7 1.6689 -4.7194 -0.8917 14 16 2.3675 -6.1796 -1.2411 15 8 1.8340 -6.5906 -2.4924 16 8 3.7599 -6.0255 -1.0027 17 7 1.8187 -7.2667 -0.1190 18 6 2.5430 -7.4832 1.1435 19 6 1.5360 -7.3690 2.2993 20 8 0.4300 -8.2386 2.0452 21 6 -0.3137 -7.9114 0.8690 22 6 0.5955 -8.0492 -0.3575 23 6 2.2279 -3.6938 0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2720 -1.8437 1.1635 26 1 1.0365 -2.2806 -2.1715 27 1 -0.5182 -2.2421 -1.2743 28 1 0.2591 -4.5448 -2.4608 29 1 -0.4431 -4.6011 -0.8150 30 1 2.9939 -8.4756 1.1425 31 1 3.3196 -6.7266 1.2556 32 1 1.1810 -6.3413 2.3761 33 1 2.0194 -7.6579 3.2326 34 1 -0.6754 -6.8857 0.9406 35 1 -1.1608 -8.5903 0.7724 36 1 0.0818 -7.6676 -1.2400 37 1 0.8537 -9.0976 -0.5071 38 1 2.3240 -4.0936 1.0106 39 1 3.2035 -3.3750 -0.3657 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592074392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:25 Heat of formation + Delta-G solvation = -159.377449 kcal Electronic energy + Delta-G solvation = -25274.404263 eV Core-core repulsion = 21537.151410 eV Total energy + Delta-G solvation = -3737.252853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.22019 -38.08542 -37.09806 -35.65578 -34.81890 -34.35907 -32.18174 -31.46785 -29.20880 -28.34458 -27.09431 -24.88512 -24.28677 -21.83703 -21.30554 -19.82041 -18.86993 -17.98294 -17.31209 -17.01315 -16.46074 -15.81882 -15.44340 -15.12054 -15.03755 -14.88322 -14.45539 -14.19634 -14.11096 -13.29383 -13.09445 -12.69567 -12.18068 -12.17428 -12.12453 -12.09358 -11.93202 -11.70501 -11.65287 -11.48266 -11.37721 -11.12839 -10.90093 -10.60417 -10.52755 -10.48471 -10.33972 -10.16487 -9.41510 -8.92180 -8.70320 -8.49149 -8.23074 -6.33141 -4.40221 0.71653 2.98556 3.16613 3.25949 3.30624 3.69567 3.74320 4.22756 4.37148 4.65537 4.72227 4.94310 5.02393 5.08725 5.11271 5.28684 5.36547 5.46158 5.49238 5.66982 5.76575 5.84319 5.92736 5.93782 5.99801 6.14125 6.25766 6.39385 6.63857 6.75474 6.90125 6.99450 7.01738 7.30101 7.34179 7.70686 7.97380 8.62280 9.28254 9.40774 10.74672 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.021759 B = 0.004907 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.498963 B = 5704.902056 C = 6055.354453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.253 3.747 10 O -0.588 6.588 11 C -0.132 4.132 12 C 0.117 3.883 13 N -1.013 6.013 14 S 2.798 3.202 15 O -0.979 6.979 16 O -0.975 6.975 17 N -1.012 6.012 18 C 0.090 3.910 19 C 0.046 3.954 20 O -0.380 6.380 21 C 0.047 3.953 22 C 0.090 3.910 23 C 0.137 3.863 24 H 0.268 0.732 25 H 0.386 0.614 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 -12.706 1.573 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.211 3.789 10 O -0.398 6.398 11 C -0.172 4.172 12 C -0.008 4.008 13 N -0.855 5.855 14 S 2.809 3.191 15 O -0.964 6.964 16 O -0.959 6.959 17 N -0.852 5.852 18 C -0.036 4.036 19 C -0.032 4.032 20 O -0.298 6.298 21 C -0.031 4.031 22 C -0.036 4.036 23 C 0.012 3.988 24 H 0.079 0.921 25 H 0.238 0.762 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.290 -13.571 1.070 13.616 hybrid contribution -0.117 1.729 -0.043 1.734 sum -0.407 -11.842 1.026 11.893 Atomic orbital electron populations 1.69583 1.05987 1.27635 1.50552 1.24997 0.95030 0.99594 0.93456 0.86353 0.80177 0.82677 0.77710 1.19562 1.20823 1.20782 1.21617 0.93804 0.90303 1.51664 0.91593 1.19463 0.85983 0.90571 0.82875 1.86061 1.51304 1.53307 1.49142 1.23331 1.02537 0.90355 1.01015 1.22127 0.83703 0.97949 0.97037 1.58862 1.34027 1.31944 1.60652 1.01427 0.73083 0.71622 0.72967 1.93566 1.80916 1.81935 1.39934 1.93581 1.30260 1.86089 1.86008 1.58469 1.36843 1.56087 1.33816 1.22140 0.94765 1.03373 0.83335 1.23066 0.87416 0.95202 0.97514 1.87913 1.43191 1.54945 1.43755 1.22961 0.93692 1.01825 0.84644 1.22036 0.85434 0.97008 0.99117 1.21837 0.97494 0.88066 0.91377 0.92149 0.76182 0.91500 0.89879 0.91676 0.92612 0.90496 0.88409 0.91731 0.87857 0.92051 0.87922 0.88593 0.90524 0.92732 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.59 10.73 55.43 0.59 -22.00 16 2 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 3 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -13.59 8.22 -34.44 -0.28 -13.88 16 8 H 0.07 1.68 7.53 -52.49 -0.40 1.28 16 9 C 0.25 5.85 0.86 -89.80 -0.08 5.77 16 10 O -0.59 -14.02 13.09 -35.23 -0.46 -14.49 16 11 C -0.13 -2.83 5.69 -24.44 -0.14 -2.97 16 12 C 0.12 2.13 7.10 -2.53 -0.02 2.11 16 13 N -1.01 -18.68 3.76 -111.42 -0.42 -19.10 16 14 S 2.80 48.04 6.36 -107.50 -0.68 47.35 16 15 O -0.98 -18.32 16.26 -57.17 -0.93 -19.25 16 16 O -0.98 -18.89 16.51 -57.17 -0.94 -19.84 16 17 N -1.01 -14.02 3.39 -112.81 -0.38 -14.40 16 18 C 0.09 1.09 6.60 -3.31 -0.02 1.07 16 19 C 0.05 0.53 7.00 37.53 0.26 0.80 16 20 O -0.38 -4.73 10.74 -35.23 -0.38 -5.11 16 21 C 0.05 0.52 6.99 37.31 0.26 0.78 16 22 C 0.09 1.05 6.57 -3.53 -0.02 1.02 16 23 C 0.14 2.83 6.33 -3.07 -0.02 2.81 16 24 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 25 H 0.39 9.47 6.98 45.56 0.32 9.79 16 26 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 27 H 0.08 1.83 7.80 -51.93 -0.40 1.43 16 28 H 0.06 1.10 7.78 -51.93 -0.40 0.70 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.21 7.24 -51.93 -0.38 0.83 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.09 7.25 -51.93 -0.38 0.71 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.07 8.07 -51.93 -0.42 0.65 16 39 H 0.07 1.55 7.63 -51.93 -0.40 1.15 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -29.50 325.97 -8.83 -38.33 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -4.96 Total: 9.50 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -0.15 Total: -0.79 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.21 Total: -55.50 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -2.71 Total: -58.68 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 48.04 SS G_CDS: -0.68 Total: 47.35 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.50 -8.83 -38.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.050 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds