Wall clock time and date at job start Fri Apr 10 2020 17:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00212 * 2 1 4 4 H 1.48505 * 109.47056 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47140 * 299.99209 * 3 2 1 6 6 H 1.48496 * 109.47367 * 59.99811 * 3 2 1 7 7 C 1.37881 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00015 * 0.02562 * 7 2 1 10 10 O 1.42895 * 110.78642 * 303.24187 * 9 7 2 11 11 C 1.55405 * 110.85075 * 66.54004 * 9 7 2 12 12 C 1.54914 * 101.66697 * 153.69831 * 11 9 7 13 13 N 1.47426 * 104.82992 * 323.07703 * 12 11 9 14 14 S 1.65602 * 125.64425 * 204.09243 * 13 12 11 15 15 O 1.42099 * 106.40482 * 23.57900 * 14 13 12 16 16 O 1.42102 * 106.40071 * 156.50151 * 14 13 12 17 17 N 1.65595 * 107.21862 * 270.03702 * 14 13 12 18 18 C 1.47155 * 120.98492 * 269.72300 * 17 14 13 19 19 C 1.53715 * 108.16136 * 129.43133 * 18 17 14 20 20 O 1.42962 * 109.14585 * 52.53813 * 19 18 17 21 21 C 1.42963 * 114.16877 * 297.28597 * 20 19 18 22 22 C 1.47152 * 120.98105 * 90.00320 * 17 14 13 23 23 C 1.47018 * 108.70517 * 24.12623 * 13 12 11 24 24 H 0.97008 * 119.99755 * 0.02562 * 1 2 3 25 25 H 0.96705 * 114.00290 * 56.75274 * 10 9 7 26 26 H 1.09000 * 110.89538 * 35.62635 * 11 9 7 27 27 H 1.09000 * 111.06973 * 271.84478 * 11 9 7 28 28 H 1.08999 * 110.37121 * 204.23438 * 12 11 9 29 29 H 1.09003 * 110.36718 * 81.91343 * 12 11 9 30 30 H 1.09003 * 109.67801 * 249.21107 * 18 17 14 31 31 H 1.09001 * 109.68140 * 9.76128 * 18 17 14 32 32 H 1.08999 * 109.65466 * 292.56899 * 19 18 17 33 33 H 1.09003 * 109.48371 * 172.39840 * 19 18 17 34 34 H 1.08998 * 109.50815 * 302.65765 * 21 20 19 35 35 H 1.08994 * 109.55195 * 182.53168 * 21 20 19 36 36 H 1.09003 * 109.68121 * 350.23649 * 22 17 14 37 37 H 1.09001 * 109.68222 * 110.79029 * 22 17 14 38 38 H 1.09002 * 109.88241 * 118.36067 * 23 13 12 39 39 H 1.09000 * 109.88049 * 239.37196 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 0.3627 -2.5718 1.1175 11 6 0.4741 -2.6893 -1.3320 12 6 0.3829 -4.2331 -1.4237 13 7 1.6689 -4.7194 -0.8917 14 16 2.3675 -6.1796 -1.2411 15 8 1.8340 -6.5906 -2.4924 16 8 3.7599 -6.0255 -1.0027 17 7 1.8187 -7.2667 -0.1190 18 6 2.5430 -7.4832 1.1435 19 6 1.5360 -7.3690 2.2993 20 8 0.4300 -8.2386 2.0452 21 6 -0.3137 -7.9114 0.8690 22 6 0.5955 -8.0492 -0.3575 23 6 2.2279 -3.6938 0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2720 -1.8437 1.1635 26 1 1.0365 -2.2806 -2.1715 27 1 -0.5182 -2.2421 -1.2743 28 1 0.2591 -4.5448 -2.4608 29 1 -0.4431 -4.6011 -0.8150 30 1 2.9939 -8.4756 1.1425 31 1 3.3196 -6.7266 1.2556 32 1 1.1810 -6.3413 2.3761 33 1 2.0194 -7.6579 3.2326 34 1 -0.6754 -6.8857 0.9406 35 1 -1.1608 -8.5903 0.7724 36 1 0.0818 -7.6676 -1.2400 37 1 0.8537 -9.0976 -0.5071 38 1 2.3240 -4.0936 1.0106 39 1 3.2035 -3.3750 -0.3657 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592074392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:24 Heat of formation + Delta-G solvation = -183.512906 kcal Electronic energy + Delta-G solvation = -25275.450855 eV Core-core repulsion = 21537.151410 eV Total energy + Delta-G solvation = -3738.299445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.15815 -39.76846 -38.53879 -37.10376 -36.10648 -35.83773 -34.11025 -32.37466 -30.88625 -30.03099 -28.08625 -26.72486 -25.20865 -23.30387 -22.41540 -21.58394 -20.11196 -19.45282 -18.88700 -18.58309 -17.53699 -16.96600 -16.91656 -16.49049 -16.31312 -16.03372 -15.89126 -15.69977 -15.31441 -14.89800 -14.64903 -13.94026 -13.80062 -13.72523 -13.48562 -13.40472 -13.34665 -13.17218 -13.16354 -12.83738 -12.80155 -12.63078 -12.35383 -12.27838 -12.21316 -11.99112 -11.50848 -11.41009 -11.19411 -10.61686 -10.09683 -9.98980 -9.91463 -8.24223 -6.37564 -0.63926 1.40796 1.45594 1.55076 1.71178 2.34151 2.39984 2.89250 2.98126 3.07510 3.60365 3.76511 3.80213 4.04648 4.13949 4.16478 4.21173 4.26709 4.38572 4.41299 4.59089 4.61196 4.63108 4.66600 4.80785 4.91959 4.94950 5.04543 5.16988 5.22250 5.26265 5.45150 5.53626 5.58549 5.79593 6.09109 6.13071 6.66655 7.33689 7.47295 8.82097 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.021759 B = 0.004907 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.498963 B = 5704.902056 C = 6055.354453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.035 3.965 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.561 4.561 8 H 0.056 0.944 9 C 0.239 3.761 10 O -0.590 6.590 11 C -0.128 4.128 12 C 0.123 3.877 13 N -1.016 6.016 14 S 2.814 3.186 15 O -0.994 6.994 16 O -0.999 6.999 17 N -1.008 6.008 18 C 0.084 3.916 19 C 0.048 3.952 20 O -0.389 6.389 21 C 0.047 3.953 22 C 0.083 3.917 23 C 0.144 3.856 24 H 0.271 0.729 25 H 0.381 0.619 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.129 0.871 34 H 0.049 0.951 35 H 0.132 0.868 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 -13.936 1.863 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.166 4.166 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.599 4.599 8 H 0.074 0.926 9 C 0.198 3.802 10 O -0.399 6.399 11 C -0.168 4.168 12 C -0.002 4.002 13 N -0.856 5.856 14 S 2.825 3.175 15 O -0.978 6.978 16 O -0.984 6.984 17 N -0.851 5.851 18 C -0.041 4.041 19 C -0.030 4.030 20 O -0.307 6.307 21 C -0.031 4.031 22 C -0.042 4.042 23 C 0.018 3.982 24 H 0.081 0.919 25 H 0.232 0.768 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.146 0.854 34 H 0.068 0.932 35 H 0.149 0.851 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.579 -14.803 1.352 14.876 hybrid contribution -0.045 2.056 -0.111 2.060 sum -0.624 -12.746 1.241 12.822 Atomic orbital electron populations 1.69643 1.06611 1.28304 1.50373 1.25599 0.95830 1.02000 0.93174 0.85510 0.78894 0.79495 0.77705 1.19827 1.20510 1.20394 1.21869 0.93669 0.91880 1.52482 0.92561 1.19611 0.86426 0.90844 0.83350 1.86050 1.51251 1.52922 1.49713 1.23158 1.01322 0.92783 0.99565 1.22083 0.84143 0.95550 0.98377 1.58854 1.33957 1.32395 1.60417 1.00840 0.72362 0.71399 0.72924 1.93541 1.81029 1.81999 1.41223 1.93545 1.31947 1.86459 1.86411 1.58222 1.37824 1.55132 1.33887 1.22358 0.94840 1.04331 0.82601 1.23118 0.87188 0.94365 0.98317 1.87908 1.43405 1.55071 1.44305 1.23089 0.94163 1.02030 0.83858 1.22307 0.84565 0.97628 0.99651 1.21594 0.96453 0.87945 0.92175 0.91906 0.76805 0.92853 0.90962 0.90116 0.91034 0.88446 0.88936 0.93435 0.85366 0.93229 0.85068 0.88295 0.88595 0.92030 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.87 10.73 21.45 0.23 -45.64 16 2 C 0.03 1.75 5.29 84.66 0.45 2.20 16 3 Si 0.96 40.80 29.54 68.60 2.03 42.83 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.56 -28.84 8.22 25.60 0.21 -28.63 16 8 H 0.06 2.92 7.53 -2.91 -0.02 2.90 16 9 C 0.24 11.15 0.86 -10.26 -0.01 11.14 16 10 O -0.59 -28.28 13.09 -148.98 -1.95 -30.23 16 11 C -0.13 -5.51 5.69 32.08 0.18 -5.33 16 12 C 0.12 4.37 7.10 86.86 0.62 4.99 16 13 N -1.02 -36.78 3.76 -506.41 -1.90 -38.68 16 14 S 2.81 93.49 6.36 -56.49 -0.36 93.13 16 15 O -0.99 -35.73 16.26 -128.00 -2.08 -37.81 16 16 O -1.00 -38.10 16.51 -128.00 -2.11 -40.22 16 17 N -1.01 -26.03 3.39 -510.84 -1.73 -27.76 16 18 C 0.08 1.87 6.60 86.50 0.57 2.44 16 19 C 0.05 1.02 7.00 72.22 0.51 1.52 16 20 O -0.39 -8.70 10.74 -148.98 -1.60 -10.30 16 21 C 0.05 0.91 6.99 72.08 0.50 1.41 16 22 C 0.08 1.73 6.57 86.35 0.57 2.29 16 23 C 0.14 5.95 6.33 86.73 0.55 6.50 16 24 H 0.27 13.02 8.31 -92.70 -0.77 12.25 16 25 H 0.38 18.88 6.98 -74.05 -0.52 18.36 16 26 H 0.05 2.38 8.04 -2.39 -0.02 2.36 16 27 H 0.07 3.22 7.80 -2.39 -0.02 3.20 16 28 H 0.08 2.62 7.78 -2.39 -0.02 2.60 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 2.18 7.24 -2.39 -0.02 2.16 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.10 2.00 7.25 -2.39 -0.02 1.99 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 2.42 8.07 -2.39 -0.02 2.40 16 39 H 0.06 2.73 7.63 -2.39 -0.02 2.71 16 Total: -1.00 -61.59 325.97 -4.79 -66.38 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.55 Total: 29.75 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 4.14 Total: -1.46 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -3.40 Total: -112.08 kcal Atomic # 8 Polarization: -110.80 SS G_CDS: -7.75 Total: -118.55 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 93.49 SS G_CDS: -0.36 Total: 93.13 kcal Total: -61.59 -4.79 -66.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.134 kcal (2) G-P(sol) polarization free energy of solvation -61.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds